TCONS_00055035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055035
Unique NameTCONS_00055035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055035 ID=TCONS_00055035|Name=TCONS_00055035|organism=Clytia hemisphaerica|type=transcript|length=3343bp
tattttcattttttgatgaaGTTGTAGTTTGGAGCGATATAGTTACAATA
CACGTATGCGATACAAGAAAGCAGAATTCCTAACAGCATGATATTGCTGC
AGCCATCGTCATTGAACCCACGTGACATTGTCTGACCAATCAATATCAAT
AAGAATGATGGATTAGCCAATCAGGCTCAACTAGCGAGAAATGGAGATCT
TCTACCTTGTTGCTTGCCTTATCTTTTATTTCACACGAAGCGTCAATGGA
TCCTTCTTAGATTTTGCGCCTCCCTACTTAGCGAACGACGCGCTTAACGG
AGAGCGAGAATATGCTAACATTTCAGGAGACATTAAACTTGGAGCCTTGG
TGGCTATCTACGATGCTGGAGGACAAGTCAACCGACAATGTAAGACGGAG
GGTATCAGCCCGTTTGGTATACAAAGAGTGGAAGCCATGAAGTTTGCTGT
TAATGAGATCAACGCTAAAGGTATCATCCCAAACGTGACGTTGGGCATCG
AAATTCGTGATTCATGTGGCACGGAAACACACGCTCTTGACGAAGCGCTC
CATTTCGTCACTGATCGTGTGCCGACATGTATTGAGGACCAACGTGTCCC
AATTTTCGGCGTCGTTGGGGCCAGTATGAGCTTACTGACTGCAGCTGTTG
CGAATTTATTACGTTTGTTTCAGATACCATTGGTATCTTATGCAGCCACG
AGTACGGAGctatcaaacaaagaaaaatatgattttcttTTGCGGACAGT
TCCGCCGGACAACTTGCAATCTGCAGCTATGGTGGATTTCATTATTGATG
TACTAGGTTGGAAGTCAGTGTTTATCATTTACTCCGCTGGTTCATACGGG
GAGTATGGGTTCGAATCTTTCATGGAGGCTGTAGATCAACGAGCCAATGA
TACAAAAGACTCGCTATGCATTGTGgataaagaaaaagttaaacCAGGTA
TCTCTGAGAAGGAGATGCTCGCCATATTAGACGAATTCAACAAAGGTTTC
AAAAGTGTTGTTGGTATCGTTTGTTATTGCGAGATCCCCGACGTCACAAC
TCTCGTTAAAGTGATCGATAAACATTATCCTCGATTCCGTCTTATCGGTT
CTGATACGACATTATCGGGTGCTAAAACGAATAAATCGATTATTTTCTCG
TTGGCTTATGACTCGAATAGTGTTTCTGACTTTTATAAAATATACCGTGG
TTTGACTCCAAAGAAAGTTAATGTAAGTTCCAACCCGTGGTTTCATCAAT
TTTGGAATGAGTCATGCGCGAAATTGAAAGCGATGAACCCGGGGTATAAT
GATACTGATTGTTCATCTGAAGACGTGTTCGGATTCTGTCGGGATACGCC
GATCGAAACAAACGACGTCACCTGTCCACAAGACGACAAAATTCCGTACA
CGATCGATGCTATATACGCGTACGCTTACGCCATACGTAATTTACTTGAA
AGTAAACCTGATAAAAATGTGACTCGATTACTATCGATGAATCTAAAAAA
TCGCGTATTCTTTGATGAATATTTGAAAAAGGTTGAATTCGATGGCCGTT
CGGGGTCTATATCTTTCGGCGAGGACGTCGAACGTGGCGCGTATGATATC
ATACAGTTTATCGGTGAGAAACGTTCCGTGTTAGGAATGTGGAAGGAAGG
ATCCATCTACGTTAACCAGTCCATACAGGAAACGCTACGTCGTGAATTTG
ATGAAAGTACTTGTCAACCGAAatgtaaaaataacgaagaacAAGTGGAG
AAATATAAAACACGTTGTTGTTGGACGTGCGAAGCATGCGCAGATGATGA
ATATCTACGAAATAACACATGTTTCGCGTGTGACCATGGACAACAGCCAA
ACAAAGATGGTGACGGATGCGTGGACACACCTATTGAATATATAAAACCG
TACTGGCAGGGGATTATTGGTGTACTTTCCACCATTGGAATCATATGCAC
TTTGTTTACATTCaaagttttcataaaaaacaatgatacacccTTAGTGA
AGGCGTCAGGGCGTGAATTAACATATTTACTACTACTCGGGATTTTAATG
CTGTTTTGCAACCCGCTTTTCATGATCCCGGAACCGTCAGATATAACATG
CGGAATCAGCCGCTTCAACTTCGGTATCTTCCTTTGTTTATGTTACGGAT
CTTTACTGGTCAAAACGAACCGGATAGCCCGGATTTTCACCGGTAAACAA
GACTTATTATTCTTAACACCGAATTGGCAATTAATCTTAACAGCATTTAT
TATGATGCCGCAGGTCTTAATAACTTCAATTGGTCTGGTAAAAGATCGAA
CCCTCTCTTATATAAATTATGATATAGACCCTAGAGTAGGGTACCACATG
TGTTCAAAAGCCAGCGATACGGGCGACATTTACGGTACGATAGTTTACAA
CATTCTGCTGGTGATTATGTGTACGTACTACGCCTTTCTAACGCGTAAAG
TACCAGCCAACTTCAACGAATCGCGCTACATAGGGTTTGTCATGTATACA
ACCATTGTCATCTGGTGTGCATTTCTTCCCGTCTACTTCTGGATAAGTCT
TGAACAAAGGCTAGTGTTCTTAATGTTGGATCATATTTTGAATGCGTTGA
CTTTATTGATTGGTTTGTTTGGTATGAAGATGTATATTTTGTTGCTGAAA
CCGGATAAAAATACAATGGCCAATTCCAAAACGAGGTCAGTAACGTATGT
ATCGGAATTGGACACCAATGGGACTGTTTATATTGATGGTCTCAGTAACG
GTGTTGCAATGTCGCATGGGCGTTACAAAGCTATCTCAACATCCACCCTG
GGTGGACCAAACACGCCCACTACCGCCCATCATCAAAACAACAACAGTGA
AGATAGAAAAACGAAAGAATTCTACATCGAGAATGAAATACAGACTGAGG
ACCGCGGCACCTCAACTTCGGCCGAGCCGGTCCAGGAGGAAAAAATAGGC
AATGGCTTTCATGCTGCACTACATAAGACTTTCACCATGTAATATACTGT
GATATACTTCTTGGACCTAGCTATGGCTTGAGAGAAATCTTGAAGTTTGT
CGTAATTATGTCCATTGGTTCTTTGATCCAACACAAGGGCCTTCAAATCT
GAGAAGAGAAGTGACGTAGCCTATCAGTCAGAGCATTTATGTATATTTTT
GTTAAGTTTCAGTAATTAGAGTATATTATATCACAGAATTATTAGAATTT
TATGTAAATTTTTAGTCATAATCttttaaatatcttttattttatatctG
AGTAATAGCGGGAGTagtagtaagtttgcgaccgcagacgcatcaagtac
cattttaggagtctttggtatgacccgggtAGGGGtggaaccc
Run BLAST on NCBI

transcript from alignment at scaffold_248:177007..189200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055035 ID=TCONS_00055035|Name=TCONS_00055035|organism=Clytia hemisphaerica|type=transcript|length=12194bp|location=Sequence derived from alignment at scaffold_248:177007..189200- (Clytia hemisphaerica)
TATTTTCATTTTTTGATGAAGTTGTAGTTTGGAGCGATATAGGTACACAC
AATTTTGCTTGGTATTTTTTGTTTCGTGACAGTTTTGTGTGGTAGTTTTG
TGTAATTGATTTATATGAGAGATTCTGTACGGCATGAAGGAATAATTTTT
AGCTGTTGTTCGGAGAGATCGGTATCCACTTTCGCGCGAAATGGGCGACA
GTTTTTTCCTCAACCTTTTTGCCTGAAGAAAAGATTACGTCATAAAAAAG
TTTCGCGCGAAACAAAAAAAAGTTGAAGGAAGTTCTACTTTTTTCATCCG
TAACGTCACTTTCGACCAATGGAATTGCTTCATTTTTCAACCGACCAATG
ACCTTTCAAAGACGTCAAAAAGTTTTCGCTCATGTCGCGCGAAAGTGGAG
ACCGGCCTTTAAGAAACAAACTTTCGCTTTGGCATAAAGAAACATCATCA
TCAATAACTTGACAGGATGAGCTTTGGTAAAATAATTATCTATTCTCATA
ATTTCTCAGTACTTAAGTGTTCTGTCTTTTTCACAAATCAAAATTTTATT
TTCCCAGTTACAATACACGTATGCGATACAAGAAAGCAGAATTCCTAACA
GCATGATATTGCTGCAGCCATCGTCATTGAACCCACGTGACATTGTCTGA
CCAATCAATATCAATAAGAATGATGGATTAGCCAATCAGGCTCAACTAGC
GAGAAATGGAGATCTTCTACCTTGTTGCTTGCCTTATCTTTTATTTCACA
CGAAGCGTCAATGGATCCTTCTTAGATTTTGCGCCTCCCTACTTAGCGAA
CGACGCGCTTAACGGAGAGCGAGAATATGCTAACATTTCAGGTAAGATCT
TCATATCTCCAAACGGACAAACTTTTTTCTCGCTTTTTTCAGAGAATTCA
AATTTTACAATGGGCTTTTCCAGAAAAAATTTGAATATGGGGGGATGGAG
GATATAACATTTTTTGGAAATTTACCACTGTCCTTGGTCATATTCTCATA
TTCGTTTTTCAGCCAAAGTGAAATTTATTCAATTAACACACCCTCTGCCT
CACAGCCCCGGTGGAACTTTTTCCCACAATGGGGATGAGAATTTTGAATG
GGGATGAAAACAAAGTCAGTTTCCCAGTAAGGTTAAAGTTGTAGGGTATT
TTTCCCATTTGGGACGAAATTTTGGTCCAGGTCCCAACGGGTCAGTGACA
CAGGGGTTTCCTAACCGAAAAATAGCCTGAAGATTGTCACCAAAGTGGCA
TGAAACTGCCAGTAGCAGAATAAAAAAGTGTTTTTTCTTGCTGACTGATA
TCGCTCTACTTATGTATCGAGCACTGTAAAAAAACTGAAGGATTACTTAA
CCCAAAAAATTAAAATTAATAAAATTTAAATCCAATACAATCTTGCCTTC
CCAGGAGACATTAAACTTGGAGCCTTGGTGGCTATCTACGATGCTGGAGG
ACAAGTCAACCGACAATGTAAGACGGAGGGTATCAGCCCGTTTGGTATAC
AAAGAGTGGAAGCCATGAAGTTTGCTGTTAATGAGGTAAGATGAATCTTT
TGTTTTTTTGTTGTTTCAGAAACTCTAATCTTTTTGGACCTACCCCGGTG
GGGTAGAGGTCCTATAAATTAACCCCTGTTCGTTCGTTCGTTCGTCCGTT
CGTTACTAGCTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATTTTTGG
CACAAAGATGCAAAATGGTAATGCCCAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAATTTTGTTGGCTCAAAAAACGCATG
TTTATCTATAAGAATCACTATTGATAAGCATACATCAATGTTCTTAATCA
AATTACTCAATTTTTTTATGAGATAGATGTTTTTCTGCTCATAAGGGCTT
ACTTTTGAAGAATATGCGTGTTTAGACCGGAAATTTGGGTTGCTTGGCGT
GTTTTCATAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTA
TCAATAACTTAGGTATTGGCTTTTCTCGAGATTGGCTCTTACATTCTTTA
TGATTTTTTACACAAAGATGCATAACTATAAACCCTTGAATGTGACAGAA
CCCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAAAAAAAATTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAAT
CACTATTAATAAGCATACATCAATGTTCTCAGTCAAATTACTCAGTTTAT
TTATGAGATAGATGTTTTTTTTCTCACGAGTGTTTAGACAGGAAATTTTG
GTTGTTTGGCGTGTTTTTATTGAAAAACTGGCCAAATTCGATATTTTTTA
TAAGCACATTATCAATTGCTTAGGTATTAGATTGATTGGCTCTTTCATTT
TTTACGATTTTTTGCACAAAGATGCATAACTATAAATCCTCGAATGTGAC
GGAGCCCGACTTTTGGAGACAAAAAATTTGGGTAAATTTCAGCTAAAATA
ACGGCCATAAAAGGGTTTTTTGGACTTGTTTTTTTCTGATTTTTTGTATG
AAAGTAGATAAAAGATGGCTCAAGCAGACTTTTGTGAAAAATGAATTTTT
CAGCTCAAAAAAAGCATCTTGATCAATAAGAATCACTATTAATAAACATA
CATCAATGTTCTTAGCCAAATTACTCAATTTTTTGGAGATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTGAATGATTGTTTAATGG
TCACGTCACGTAGATATCAATTATAAACGTGTTAAATGCATAATCCAGGT
AGGTCCATCAAAGTATCACTTGTTATTTTTAGTTTTTTCTGATTTTTTGC
AGAAAGATGCGTATTCGCAATGCTCAAAACATGGCCGAGTTCGATTTTGG
AGAAAATTTTTTTTCCGGTTGAAAATTCCGGAGATCGCCGTTTTTGCAGA
TTTTCATTGGATTCTTTCCTTATATTTTCTATGTTTTTCACACAAAAACA
TTATTGATAACAATGCTCACCATCAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTT
GCGTTATGCTTTCTGACTGATTTTTTTTCATTTTTCTCCTTGCATTGCTA
TCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTAAAT
CGAATCTTTCCACAATTAAGTCTAAACATTTCAGCTCAGAAACTCTATTT
TCTTTGACTGGAATCTTTCTAACTCGACTTTTCAGCTCAAGCTTCCTAAA
CAACAGTGTATGCAGTTCTTCCTCTCTGCGAAGTATGAAAAGAGGGTTTT
ATGGAAAAAATTTCTTGCTGGGCCAGATAAATTTGATAAAAAAGTGATTT
TTCTCAGAAGGAGACTTTGCTTTGACCACTGAAACCAGCTGAAACAATTG
TCAAATTTCGTTACTCTTAGGGGAGGGGGCTCGAATAAACGGGGGGGGGG
GGGGGCAAAAAAAGGGGGGGGGGGGGGGCAAAAAAAGGGGGGGGGGGGGG
GCAAAAAAAGGGGGGGGGGGGGGGCAAAAAAAGGGGGGGGGGGGGGGCAA
AAAAAGGGGGGGGGGGGGGGCAAAAAAAGGGGGGGGGGGGGGGCAAAAAA
AGGGGGGGGGGGGGGGCAAAAAAAGGGGGGGGGGGGGGGCAAAAATTAAA
AAATTTTCAAAAAGGGGGCCTAATTGCCGGGGGGTTTGAAATTGTAATTA
CGATAACCCAAAAATAAGGCAAAAATAAGGCTTTTTAGCCGAGCAAATAA
GAGACCTTCTACTTGAAAGCTGAAAAAATTCTTGCAAATAAATAAACGGA
GGGAGGGGGACCTAATAAGGTCCGGGGGTTGGAAAATTTCCGAACAATTA
AAGAGCGGGGGGCGTTTATTTTGGAACCTAAGAGTACTTATGTGTGCTTG
AGCACTAAACTGAAAATTCTTTTAACCTTCTAAATGAACTTCTAAACGAA
ACATTCAATGTTTCATTTTTAAAATGAAACAAAGGGTAACGTAGAGATTA
GAAACTGTGGCTCTTGCATAAAAGAGGTTATTAAAAGTTATTATGCTAAA
ACTGAAAACTCACTTCAAAAAACAACCAATGAGTTTTTCCATTAAATCTC
ATCTAAATCTGAAAACTCACTTCAAAAAGTAATAAATTTCCCCATTAAAT
CTCATCTCTAGATCAACGCTAAAGGTATCATCCCAAACGTGACGTTGGGC
ATCGAAATTCGTGATTCATGTGGCACGGAAACACACGCTCTTGACGAAGC
GCTCCATTTCGTCACTGATCGTGTGCCGACATGTATTGAGGACCAACGTG
TCCCAATTTTCGGCGTCGTTGGGGCCAGTATGAGCTTACTGACTGCAGCT
GTTGCGAATTTATTACGTTTGTTTCAGATACCATTGGTATGACCATTCTC
ACTTACCCCATTTCACTGTCGAAAGGAATTATGGGTAATCAGGACCACTG
TGCTCTGATAGCGACTTTCTGTGAATGTTTTGAGTCAGTCCTGTAATCGA
CCAGTCAGTCCTGATTCCACATGCTTTATTTCGACAGTGAAATGGCCTAG
TATACATTACAGTTTTAAAGTGAGCTATTTAAATTCACTGAACTTTATAT
AAACCCTGGAGGCAGTTTCTTAATCCAAGCCAGTTTTTTGAAGAAAGATA
CATTAATGCACCGAGAACGCTAGGCCTGCTTTTCAATGAATAATAGTGAA
GTAGCCCCGTTTGTCGTTATTAGCACTGCAATGGCTCCTTTACGGATACT
CCTTTAAGATAAACTTCTATCAAAGATTGCGGGTATAGCTTAGTGGAACA
AACTTAACATGATTATATCTCGATATTCAGGTATCTTATGCAGCCACGAG
TACGGAGCTATCAAACAAAGAAAAATATGATTTTCTTTTGCGGACAGTTC
CGCCGGACAACTTGCAATCTGCAGCTATGGTGGATTTCATTATTGATGTA
CTAGGTACGGATATGTTAGATCTGTTGAATCTTTTTACCATACACTGGGC
GAAATATGATGTTTCAATCCTGGAAATATCTTGAAAATATGATGTTTCAA
TCCTGGCAATTTCATGAAATATGATATTTTCTAAACTTTGGAAGTATAGA
AAAAGTCATATTTTCATTATTTACAAATGTATATGGAAACATCATATTTT
CAAGATATTTCCAGGATTGGAAATCTTTTATTTCGCCCTGTGATAGTTTC
AAGGGTACGAGCTATGGAGTTTGAGATTGTGGATTCTAGCCTGGTCTTTT
TTATCAATTTTTATTGATGAAAATCGCTTTTTTACATTCTTATAAAATTT
TGAGCGCAAATAATGCCTTCAAAACCGAGGCAAAAAATTTCAGTGTATTC
CTCAATCATAAACTATGGTCTAAAGGAAAATAGAAAAAAGGAGTATTTGT
GAATTCAAAGGTGAACGTCACTAGCATTTTGTAGTTACCTAGTCCCTGCA
CTGTAGGCTAACTCCCCTCCTGATTTCGGCATTTCTTACAATGTACCCAA
ATTTTTCACAACACGGTTTTAGGATCGATTTTGCTCCCTGAGGTGTTATG
GTTTCATTCCAATCACTTATTTTTCGTTATCTAGGTTGGAAGTCAGTGTT
TATCATTTACTCCGCTGGTTCATACGGGGAGTATGGGTTCGAATCTTTCA
TGGAGGCTGTAGATCAACGAGCCAATGATACAAAAGACTCGCTATGCATT
GTGGATAAAGAAAAAGTTAAACCAGGTGGGTTCATTAAAAGTATATACTC
TGTATAACTTCAATTTAGGGGCCGTAGCATAACGTTAGAGTTTTCGGCTA
TGGCGTGTGCTAAGTCACGTGCTGACAACCTCAATGATTGAACAGAAGGA
TCTTCTTTCACGATATGAAAGAATCCCAGACCTCTACGAAACCGTGGAGC
ACGAATCCGTCAGTGGATGTACAACGAGAATGAAATCAAAGATTCGAGTT
TTTAAAGGGTTCAATGAAGTTAAAATTCGGCATTCACAAAGACATGCATT
TGATTGCATTTGATCCTAGTACATTTTAAGTTAATCTGCGACCAGCAGAC
TCCTTATTCGATAGCTCTATACCCGAGAGTAAGGGATGGCGCCATGCTTT
CCTTAGACAGCTATACTACATGGGGTTTTGCGATTCAGACTACACTTACC
CTTGACCCTTGTCATAAATTGCTCATCGTCAAGCAGAGAGACATCAAGTA
CCATTTTTGTATTAAGTACGAAGCAATACCGAGTTTATGTATTTGCACTT
TTGAGGACGGTAGAGTGACTGAAGCGATTTGGAAAAACCCGCAATTCCGC
CCCGCAAAATCGAGGACGGTAAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTACCGTCT
CCGTCGCTGAAAAACACACATACATAAACTCGCTAATGGATATGGTCCGG
CCAGGGATTGAATCCACATCTTGCGCTCTGTAGCCAAACACTCTTCATCT
GCACTACGATTTGCTTGAACTCTAAAAAAACTCTAACTCAGTCTACTGTT
TATCTTCTTGTTGATATAATGTATTTTACTTTGTATGTTTCTCTTTGCTT
CTTTCTAGGTATCTCTGAGAAGGAGATGCTCGCCATATTAGACGAATTCA
ACAAAGGTTTCAAAAGTGTTGTTGGTATCGTTTGTTATTGCGAGATCCCC
GACGTCACAACTCTCGTTAAAGTGATCGATAAACATTATCCTCGATTCCG
TCTTATCGGTTCTGATACGACATTATCGGGTGCTAAAACGAATAAATCGA
TTATTTTCTCGTTGGCTTATGACTCGAATAGTGTTTCTGACTTTTATAAA
ATATACCGTGGTTTGACTCCAAAGAAAGTTAATGTAAGTTCCAACCCGTG
GTTTCATCAATTTTGGAATGAGTCATGCGCGAAATTGAAAGCGATGAACC
CGGGGTATAATGATACTGATTGTTCATCTGAAGACGTGTTCGGATTCTGT
CGGGATACGCCGATCGAAACAAACGACGTCACCTGTCCACAAGACGACAA
AATTCCGTACACGATCGATGCTATATACGCGTACGCTTACGCCATACGTA
ATTTACTTGAAAGTAAACCTGATAAAAATGTGACTCGATTACTATCGATG
AATCTAAAAAATCGCGTATTCTTTGATGAATATTTGAAAAAGGTTGAATT
CGATGGCCGTTCGGGGTCTATATCTTTCGGCGAGGACGTCGAACGTGGCG
CGTATGATATCATACAGTTTATCGGTGAGAAACGTTCCGTGTTAGGAATG
TGGAAGGAAGGATCCATCTACGTTAACCAGTCCATACAGGAAACGCTACG
TCGTGAATTTGATGAAAGTACTTGTCAACCGAAATGTAAAAATAACGAAG
AACAAGTGGAGAAATATAAAACACGTTGTTGTTGGACGTGCGAAGCATGC
GCAGATGATGAATATCTACGAAATAACACATGTTTCGCGTGTGACCATGG
ACAACAGCCAAACAAAGATGGTGACGGATGCGTGGACACACCTATTGAAT
ATATAAAACCGTACTGGCAGGGGATTATTGGTGTACTTTCCACCATTGGA
ATCATATGCACTTTGTTTACATTCAAAGTTTTCATAAAAAACAATGATAC
ACCCTTAGTGAAGGCGTCAGGGCGTGAATTAACATATTTACTACTACTCG
GGATTTTAATGCTGTTTTGCAACCCGCTTTTCATGATCCCGGAACCGTCA
GATATAACATGCGGAATCAGCCGCTTCAACTTCGGTATCTTCCTTTGTTT
ATGTTACGGATCTTTACTGGTCAAAACGAACCGGATAGCCCGGATTTTCA
CCGGTAAACAAGACTTATTATTCTTAACACCGAATTGGCAATTAATCTTA
ACAGCATTTATTATGATGCCGCAGGTCTTAATAACTTCAATTGGTCTGGT
AAAAGATCGAACCCTCTCTTATATAAATTATGATATAGACCCTAGAGTAG
GGTACCACATGTGTTCAAAAGCCAGCGATACGGGCGACATTTACGGTACG
ATAGTTTACAACATTCTGCTGGTGATTATGTGTACGTACTACGCCTTTCT
AACGCGTAAAGTACCAGCCAACTTCAACGAATCGCGCTACATAGGGTTTG
TCATGTATACAACCATTGTCATCTGGTGTGCATTTCTTCCCGTCTACTTC
TGGATAAGTCTTGAACAAAGGCTAGTGTTCTTAATGTTGGATCATATTTT
GAATGCGTTGACTTTATTGATTGGTTTGTTTGGTATGAAGATGTATATTT
TGTTGCTGAAACCGGATAAAAATACAATGGCCAATTCCAAAACGAGGTCA
GTAACGTATGTATCGGAATTGGACACCAATGGGACTGTTTATATTGATGG
TAAGTTATTGGGTTGATCCATTGGTCTCTAAATACTTGACTAGATAGGGC
TTCACATGTATAAAAGGTAGTATTTTAGAGCTGATTGGTCCGCCATCTTG
CTTTAAATTCTGGTCGTCAAGAAAACAAAAGTGGTGGACTAGTCGACTTC
AAAGCTGGACACAGAAATCTGCGAACAGTAAGCCTATTTAAACAGACACG
TACAATCAAGGTCATAATATATTGAGAACTTTGGCTATTTTAACGTTTTT
CAAGATTTAAAGTTCTGGCGAGAAAGTCGATTTTTGGCTATCTTTTTGAT
TTAATCGAATATTTCAATTTGGGAGGGGTTGGCAGACTTCCAGGCTATAT
TTTGAGTCTTATTGGACTATTTTTGAACTTTTGGATCCTCAGATCCTAAG
GCCCTAAATCTTAAGTCTCATGTTAAAACTCAGAGTTAAAACTCTACCCT
TCCAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTCAAAAACTTCC
CGGTGGATTTCCCTTTTTTCTCAAATATTATGACCTTGATTGTAGCTTGA
AAAACAAACTTTTGAAATACAATGAAACTCGTGTTTAGAATTCCTTACCA
GGCCAATTTCTTTATATAAAACCTCATTTTTAATTTCAGGTCTCAGTAAC
GGTGTTGCAATGTCGCATGGGCGTTACAAAGCTATCTCAACATCCACCCT
GGGTGGACCAAACACGCCCACTACCGCCCATCATCAAAACAACAACAGTG
AAGATAGAAAAACGAAAGAATTCTACATCGAGAATGAAATACAGACTGAG
GACCGCGGCACCTCAACTTCGGCCGAGCCGGTCCAGGAGGAAAAAATAGG
CAATGGCTTTCATGCTGCACTACATAAGACTTTCACCATGTAATATACTG
TGATATACTTCTTGGACCTAGCTATGGCTTGAGAGAAATCTTGAAGTTTG
TCGTAATTATGTCCATTGGTTCTTTGATCCAACACAAGGGCCTTCAAATC
TGAGAAGAGAAGTGACGTAGCCTATCAGTCAGAGCATTTATGTATATTTT
TGTTAAGTTTCAGTAATTAGAGTATATTATATCACAGAATTATTAGAATT
TTATGTAAATTTTTAGTCATAATCTTTTAAATATCTTTTATTTTATATCT
GAGTAATAGCGGGAGTAGTAGTAAGTTTGCGACCGCAGACGCATCAAGTA
CCATTTTAGGAGTCTTTGGTATGACCCGGGTAGGGGTGGAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034667XLOC_034667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055035-exon-scaffold_248-1575043694:189159..189200TCONS_00055035-exon-scaffold_248-1575043694:189159..189200Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:188360..188643TCONS_00055035-exon-scaffold_248-1575043694:188360..188643Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:187666..187796TCONS_00055035-exon-scaffold_248-1575043694:187666..187796Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:182365..182589TCONS_00055035-exon-scaffold_248-1575043694:182365..182589Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:181797..181920TCONS_00055035-exon-scaffold_248-1575043694:181797..181920Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:181026..181166TCONS_00055035-exon-scaffold_248-1575043694:181026..181166Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:178252..180042TCONS_00055035-exon-scaffold_248-1575043694:178252..180042Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1575043694:177007..177611TCONS_00055035-exon-scaffold_248-1575043694:177007..177611Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:189159..189200TCONS_00055035-exon-scaffold_248-1510915933:189159..189200Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:188360..188643TCONS_00055035-exon-scaffold_248-1510915933:188360..188643Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:187666..187796TCONS_00055035-exon-scaffold_248-1510915933:187666..187796Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:182365..182589TCONS_00055035-exon-scaffold_248-1510915933:182365..182589Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:181797..181920TCONS_00055035-exon-scaffold_248-1510915933:181797..181920Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:181026..181166TCONS_00055035-exon-scaffold_248-1510915933:181026..181166Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:178252..180042TCONS_00055035-exon-scaffold_248-1510915933:178252..180042Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1510915933:177007..177611TCONS_00055035-exon-scaffold_248-1510915933:177007..177611Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:189159..189200TCONS_00055035-exon-scaffold_248-1491911889:189159..189200Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:188360..188643TCONS_00055035-exon-scaffold_248-1491911889:188360..188643Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:187666..187796TCONS_00055035-exon-scaffold_248-1491911889:187666..187796Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:182365..182589TCONS_00055035-exon-scaffold_248-1491911889:182365..182589Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:181797..181920TCONS_00055035-exon-scaffold_248-1491911889:181797..181920Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:181026..181166TCONS_00055035-exon-scaffold_248-1491911889:181026..181166Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:178252..180042TCONS_00055035-exon-scaffold_248-1491911889:178252..180042Clytia hemisphaericaexon
TCONS_00055035-exon-scaffold_248-1491911889:177007..177611TCONS_00055035-exon-scaffold_248-1491911889:177007..177611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:177007..189200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.555389	1.11185	0.93948	0.56802	0.9205	1.76767	2.16514	2.61605	0.884928	1.73771	1.75206	0.4169	4.9544	4.6057	7.19589	6.44428	7.1524	5.03508	5.95105	7.631	6.33451	6.90011	2.85493	6.29734	7.63145	8.0373	2.69362	2.51413	42.683	43.4491
Blast
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BLAST of TCONS_00055035 vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 1.074e-108
Identity = 282/881 (32.01%), Postives = 438/881 (49.72%), Query Frame = 2 
Query:  296 NGEREYANISGDIKLGALVAIYDAG------GQVNRQCKTEGISPFGIQRVEAMKFAVNEINAKG-IIPNVTLGIEIRDSCGTETHALDEALHFVTDRVPTCIE------------DQRVPIF--GVVGASMSLLTAAVANLLRLFQIPLVSYAATSTELSNKEKYDFLLRTVPPDNLQSAAMVDFIIDVLGWKSVFIIYSAGSYGEYGFESFMEAVDQRANDTKDSLCIVDKEKVKPGISEKEMLAILDEFNKGFKSVVGIVCYCEIPDVTTLVKVIDKHYPRFRLIGSD------TTLSGAKTNKSIIFSLAYDSNSVSDFYKIYRGLTPKKVNVSSNPWFHQFWNESCAKLKAMNPGYNDTDCSSEDVFGFCR--DTPIETNDVTCPQDDKXXXXXXXXXXXXXXXRNLLESKPDKNVTRLLSMN--LKNRVFFDEYLKKVEF------DGRSGSI----SFGEDVERGAYDIIQF--IGEKRSVL--GMWKEG-SIYVNQSIQETLRREFDESTCQPKCKNNEEQVEKYKTRCCWTCEACADDEYLRNN-TCFACDHGQQPNKDGDGCVDTPIEYIKPYWQGIIGV----LSTIGIICTLFTFKVFIKNNDTPLVKASGREXXXXXXXXXXXXFCNPLFMIPEPSDITCGISRFNFGIFLCLCYGSLLVKTNRIARIF----TGKQDLLFLTPNWQLILTAFIMMPQVLITSIGLVKDRTLSYINYDIDPRVGYHMCSKASDTGDIYGTIVYNILLVIMCTYYAFLTRKVPANFNESRYIGFVMYTTIVIWCAFLPVYFWISLEQRL--VFLMLDHILNALTLLIGLFGMKMYILLLKPDKNTMA-----NSKTRSVTYVSELDTNGTVYIDGLSNG 2752
            N  R    I GD+ LG L  I + G      G++N           GIQR+EAM FA++EIN    ++P V LG+ I D+C  +T+AL+++L FV   +    E             + +P+   GV+G S S ++  VANLLRLFQIP +SYA+TS +LS+K +YD+  RTVPPD  Q+ AM + I+    W  V  + S G YGE G E+F +    R      ++CI   EKV      K   +++ E  +   + V +V +    D   L+    +    F  + SD      + + G++       +L   S  V  F + ++ L P   N   NPWF  FW +                CS ++     R  D  +  +     Q+ KI + ++A+YA A+A+  + +     N T+L      L  +  + +YL K+ F      +  + SI    +FG+ +  G Y++  F  +G K S L  G W E  S+ VN SI  + R     S C   C  NE +  +    CCW C  C   EYL +  TC  C  GQ P  D  GC D P +YI+  W+    +    ++ +G +CT     VFIK+N+TPLVKASGREL Y+LL G+ + +C   F I +PS + C + R   G    +CY +LL KTN IARIF     G Q   F++P+ Q+ +   +++ Q+++ S+ L+ +   +      + R    +     D+  +  ++ Y+++LVI+CT YAF TRK P NFNE+++IGF MYTT +IW AFLP+++  S + R+    + +   L+   +L  LF  K++I+L +P KN +      N  + S T  +   ++ + Y+  + NG
Sbjct:   27 NFLRREIKIEGDLVLGGLFPINEKGTGTEECGRINED--------RGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAE-ILRFFNWTYVSTVASEGDYGETGIEAFEQEARLR------NICIATAEKVGRSNIRKSYDSVIRELLQKPNARV-VVLFMRSDDSRELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNP--YNNHRNPWFRDFWEQK-------------FQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM-QRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM--GRYNVFNFQNVGGKYSYLKVGHWAETLSLDVN-SIHWS-RNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLADEFTCMDCGSGQWPTADLTGCYDLPEDYIR--WEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEAPGTRRYTLAEKRETVILKCNVKDSSMLI-SLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIILFQPQKNVVTHRLHLNRFSVSGTGTTYSQSSASTYVPTVCNG 868
The following BLAST results are available for this feature:
BLAST of TCONS_00055035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM31.074e-10832.01Metabotropic glutamate receptor 3 OS=Homo sapiens ... [more]
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