TCONS_00055040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055040
Unique NameTCONS_00055040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055040 ID=TCONS_00055040|Name=TCONS_00055040|organism=Clytia hemisphaerica|type=transcript|length=1634bp
GGAATTTGTAAGAGAACATAAACTAGACATAATTTAGTTTTCTCTTGATT
GATGAGGAAATGTAAGAGAAGGTCTTTTTACAGAGCATTAAACAGTGGAA
TGGTAAATGGTAAGGTTGCAGTAAACAAAGCGAATTTCTTCCAGATACTA
TATCATACTGTTTCTTCAATGACTAAAAACAAGATGGATTTCGACCTGGA
TCTAAAGGTGATACAAAATCGGAACTTTAAAGACGCAACGACAATCGAAG
TCACAATATTATCCGGAAAAGTATACAGTATCAATATTCCCGAGCGAAAG
AATGCAGTCGACAATCCATTGAAAGTCGCTGATGTGAAAGCACTCATTGC
TAAACAAGCGAAAATTCCAACTCAAACTCAAGAACTTTTTCATGAAGGGA
TTTCACTGAAAGATGATGAGGTGTACAAAATGGAATGGAAAAAGTTGCGA
CTAGCCCTGAATCCAACTCCAGAGTTTGTACTGCTAGTCTATATGTACAC
ATTCTACAGAATCAAAGTAAGGAGAGAATGGACAATAAGAGAAGTGAAAG
TGAAGCTTGAGCTACAAACAGGTATCCCAGCTAGCTCAATCTATCTTTCC
AAAGAGAAAGAGAATGTGAAACCGTTGTATGCAAAATTGCCGGCAGATGA
TGTATTACTCTGTACTTTGAATATAGATAGTACAACAAAGCTTGTTGGGT
TACGAATGTTGCATTTGGGCGATAAAGGACATGCACCCGTTATGAATAAA
CATGACACAGTGGCGAATCTGATTTCACGCGTCAGGCGTGAGAAGAAGCT
GGATATGATAGAGTATGGAGATAAAGAGAAATTTGGTGATCTTTCGAAGA
AGGATAAGTTATTGGAGCTTAAGGCTTACACCTTCAACTGTATTTGATTG
CGAAGGGGGGTTATGGGTCATACTCTATGGTTGTATTTTCGGACTACATA
TTATAAAAGTGAAAATGTCGTTTATTCTACAATTGACGCTCTCTatttcg
acgttctactattcgataggcaaATTCTTAATTGTGGCTTACgattacag
tcaactctctctataACTGGAAGAAAAATATTGGCCGCTCAGCTAAAAAG
TGATGTGAAATACTCTCTGTAatccgaatctttctctaattcgaggaAAA
TGtctggtcccttgaagatcgagtgagagagtgtcaactgtagtTTATGT
TGAGATCTTGCAAGTattatttttgaatgttttgtacgttttgtaaagtt
tatttgtaaatagctttaaaattaTTACGATGAAGTATTTACACCCTCAA
TCCCAGGGCTAACCtcatcaatgtttttatttgaatgaTGATGGGTTTTC
GTCCGGTCTTGTCACTTAAAATAGGTTACAAATCTCAAAAGCTACCCATA
TATTATGTTTTTATCAAAACGATGTTAAAAATATCTGAAGTATCTCTTGA
CAAACTGTTTTGCTTGTAAAAATATTACCAAATACTGAAAATAAGTTGAT
TCTTTCTATAATTAGAactaattcgaagaaatttcTTGATCGCTTGAATC
AATAGAGTCGACTATAAATTCAAGGATTTGAGTCAAAAGCTTACCATTAA
CTCTGAAATCTCGGATGTCTTCTTTCTTTATGAT
Run BLAST on NCBI

protein sequence of TCONS_00055040-protein

>TCONS_00055040-protein ID=TCONS_00055040-protein|Name=TCONS_00055040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MRKCKRRSFYRALNSGMVNGKVAVNKANFFQILYHTVSSMTKNKMDFDLD
LKVIQNRNFKDATTIEVTILSGKVYSINIPERKNAVDNPLKVADVKALIA
KQAKIPTQTQELFHEGISLKDDEVYKMEWKKLRLALNPTPEFVLLVYMYT
FYRIKVRREWTIREVKVKLELQTGIPASSIYLSKEKENVKPLYAKLPADD
VLLCTLNIDSTTKLVGLRMLHLGDKGHAPVMNKHDTVANLISRVRREKKL
DMIEYGDKEKFGDLSKKDKLLELKAYTFNCI
Run BLAST on NCBI

transcript from alignment at scaffold_248:264993..267439-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055040 ID=TCONS_00055040|Name=TCONS_00055040|organism=Clytia hemisphaerica|type=transcript|length=2447bp|location=Sequence derived from alignment at scaffold_248:264993..267439- (Clytia hemisphaerica)
GGAATTTGTAAGAGAACATAAACTAGACATAATTTAGTTTTCTCTTGATT
GATGAGGAAATGTAAGAGAAGGTCTTTTTACAGAGCATTAAACAGTGGAA
TGGTAAATGGTAAGGTTGCAGTAAACAAAGCGAATTTCTTCCAGATACTA
TATCATACTGTTTCTTCAATGACTAAAAACAAGATGGATTTCGACCTGGA
TCTAAAGGTATACATATCTTTTGAGATTGAAAGATTGAGCGACATTTAGA
GGCTGAAAAAGAAAAGGGTTTCCCAATTGTAAGTAAGAGATCCACCCTCC
ATTTGTTTACCCACTCAAAGTGTGACCAGGGGTCAACGTTTAAAATTTTC
TTCATTGGCCAACAATAAATTACTCTTATATTTGGTCTCGTTGCTAACTT
CAAATTTAAATAACAAATTTTCTTTATATCCCCTTTTTTAGCACGTAAAG
TTTTTTAGATTAATGGATCCACAGGGCGAGGGTTGCTTGAAATTTAAACA
TTACAAAATTTCTTTCTGTATTAGGTGATACAAAATCGGAACTTTAAAGA
CGCAACGACAATCGAAGTCACAATATTATCCGGAAAAGTATACAGTATCA
ATATTCCCGAGCGAAAGAATGCAGTCGACAATCCATTGAAAGTCGCTGAT
GTGAAAGCACTCATTGCTAAACAAGCGAAAATTCCAACTCAAACTCAAGA
ACTTTTTCATGAAGGGATTTCACTGAAAGATGATGAGGTAACGGCTTTAA
TACTTTTAATAAAGTGAAATAATCGCAGGGGACCGAATCGGCAATACTTT
TACAAGTGAAAAATACAAAATAGGTACAATACCAAGTTTGTGTATGTGTG
TTTTTCTGCGACTGAGACAGTAAGGTTCTAATTTGAGTAGATCCTGACTG
ACTGAGGATGACGGTAGATCAGTACTTTTACCGTCCTCGATTTTGCGGGT
CAGAACTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAA
AGTGCAAATTCACAAACTCACTACTAATATCAGCATCTGCTTTATTTTAG
CCGCGTCCATTATACTAAACTAACCACTATTTATTAAGCTTACAAGCTTT
TTCAAGTTAGCCCTTACAAGTCGGTCGTTTCTATTGGATTTCAAAAAGAG
GCTCACTATATCACTTTGAAGATTTTTGATTTCAAAAAGAAATGTTGAAA
AAGGTTTTAATTCTGTTTCCATTCTACTCACAGGTGTACAAAATGGAATG
GAAAAAGTTGCGACTAGCCCTGAATCCAACTCCAGAGTTTGTACTGCTAG
TCTATATGTACACATTCTACAGAATCAAAGTAAGGAGAGAATGGACAATA
AGAGAAGTGAAAGTGAAGCTTGAGCTACAAACAGGTATCCCAGCTAGCTC
AATCTATCTTTCCAAAGAGAAAGAGAATGTGAAACCGTTGTATGCAAAAT
TGCCGGCAGATGATGTATTACTCTGTACTTTGAATATAGATAGTACAACA
AAGCTTGTTGGGTTACGAATGTTGCATTTGGGCGATAAAGGACATGCACC
CGTTATGAATAAACATGACACAGTGGCGAATCTGATTTCACGCGTCAGGC
GTGAGAAGAAGCTGGATATGATAGAGTATGGAGATAAAGAGAAATTTGGT
GATCTTTCGAAGAAGGATAAGTTATTGGAGCTTAAGGCTTACACCTTCAA
CTGTATTTGATTGCGAAGGGGGGTTATGGGTCATACTCTATGGTTGTATT
TTCGGACTACATATTATAAAAGTGAAAATGTCGTTTATTCTACAATTGAC
GCTCTCTATTTCGACGTTCTACTATTCGATAGGCAAATTCTTAATTGTGG
CTTACGATTACAGTCAACTCTCTCTATAACTGGAAGAAAAATATTGGCCG
CTCAGCTAAAAAGTGATGTGAAATACTCTCTGTAATCCGAATCTTTCTCT
AATTCGAGGAAAATGTCTGGTCCCTTGAAGATCGAGTGAGAGAGTGTCAA
CTGTAGTTTATGTTGAGATCTTGCAAGTATTATTTTTGAATGTTTTGTAC
GTTTTGTAAAGTTTATTTGTAAATAGCTTTAAAATTATTACGATGAAGTA
TTTACACCCTCAATCCCAGGGCTAACCTCATCAATGTTTTTATTTGAATG
ATGATGGGTTTTCGTCCGGTCTTGTCACTTAAAATAGGTTACAAATCTCA
AAAGCTACCCATATATTATGTTTTTATCAAAACGATGTTAAAAATATCTG
AAGTATCTCTTGACAAACTGTTTTGCTTGTAAAAATATTACCAAATACTG
AAAATAAGTTGATTCTTTCTATAATTAGAACTAATTCGAAGAAATTTCTT
GATCGCTTGAATCAATAGAGTCGACTATAAATTCAAGGATTTGAGTCAAA
AGCTTACCATTAACTCTGAAATCTCGGATGTCTTCTTTCTTTATGAT

Coding sequence (CDS) from alignment at scaffold_248:264993..267439-

>TCONS_00055040 ID=TCONS_00055040|Name=TCONS_00055040|organism=Clytia hemisphaerica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_248:264993..267439- (Clytia hemisphaerica)
GTGTACAAAATGGAATGGAAAAAGTTGCGACTAGCCCTGAATCCAACTCC
AGAGTTTGTACTGCTAGTCTATATGTACACATTCTACAGAATCAAAGTAA
GGAGAGAATGGACAATAAGAGAAGTGAAAGTGAAGCTTGAGCTACAAACA
GGTATCCCAGCTAGCTCAATCTATCTTTCCAAAGAGAAAGAGAATGTGAA
ACCGTTGTATGCAAAATTGCCGGCAGATGATGTATTACTCTGTACTTTGA
ATATAGATAGTACAACAAAGCTTGTTGGGTTACGAATGTTGCATTTGGGC
GATAAAGGACATGCACCCGTTATGAATAAACATGACACAGTGGCGAATCT
GATTTCACGCGTCAGGCGTGAGAAGAAGCTGGATATGATAGAGTATGGAG
ATAAAGAGAAATTTGGTGATCTTTCGAAGAAGGATAAGTTATTGGAGCTT
AAGGCTTACACCTTCAACTGTATTTGAGTGATACAAAATCGGAACTTTAA
AGACGCAACGACAATCGAAGTCACAATATTATCCGGAAAAGTATACAGTA
TCAATATTCCCGAGCGAAAGAATGCAGTCGACAATCCATTGAAAGTCGCT
GATGTGAAAGCACTCATTGCTAAACAAGCGAAAATTCCAACTCAAACTCA
AGAACTTTTTCATGAAGGGATTTCACTGAAAGATGATGAGATGAGGAAAT
GTAAGAGAAGGTCTTTTTACAGAGCATTAAACAGTGGAATGGTAAATGGT
AAGGTTGCAGTAAACAAAGCGAATTTCTTCCAGATACTATATCATACTGT
TTCTTCAATGACTAAAAACAAGATGGATTTCGACCTGGATCTAAAGGTGT
ACAAAATGGAATGGAAAAAGTTGCGACTAGCCCTGAATCCAACTCCAGAG
TTTGTACTGCTAGTCTATATGTACACATTCTACAGAATCAAAGTAAGGAG
AGAATGGACAATAAGAGAAGTGAAAGTGAAGCTTGAGCTACAAACAGGTA
TCCCAGCTAGCTCAATCTATCTTTCCAAAGAGAAAGAGAATGTGAAACCG
TTGTATGCAAAATTGCCGGCAGATGATGTATTACTCTGTACTTTGAATAT
AGATAGTACAACAAAGCTTGTTGGGTTACGAATGTTGCATTTGGGCGATA
AAGGACATGCACCCGTTATGAATAAACATGACACAGTGGCGAATCTGATT
TCACGCGTCAGGCGTGAGAAGAAGCTGGATATGATAGAGTATGGAGATAA
AGAGAAATTTGGTGATCTTTCGAAGAAGGATAAGTTATTGGAGCTTAAGG
CTTACACCTTCAACTGTATTTGAGTGATACAAAATCGGAACTTTAAAGAC
GCAACGACAATCGAAGTCACAATATTATCCGGAAAAGTATACAGTATCAA
TATTCCCGAGCGAAAGAATGCAGTCGACAATCCATTGAAAGTCGCTGATG
TGAAAGCACTCATTGCTAAACAAGCGAAAATTCCAACTCAAACTCAAGAA
CTTTTTCATGAAGGGATTTCACTGAAAGATGATGAGATGAGGAAATGTAA
GAGAAGGTCTTTTTACAGAGCATTAAACAGTGGAATGGTAAATGGTAAGG
TTGCAGTAAACAAAGCGAATTTCTTCCAGATACTATATCATACTGTTTCT
TCAATGACTAAAAACAAGATGGATTTCGACCTGGATCTAAAGGTGTACAA
AATGGAATGGAAAAAGTTGCGACTAGCCCTGAATCCAACTCCAGAGTTTG
TACTGCTAGTCTATATGTACACATTCTACAGAATCAAAGTAAGGAGAGAA
TGGACAATAAGAGAAGTGAAAGTGAAGCTTGAGCTACAAACAGGTATCCC
AGCTAGCTCAATCTATCTTTCCAAAGAGAAAGAGAATGTGAAACCGTTGT
ATGCAAAATTGCCGGCAGATGATGTATTACTCTGTACTTTGAATATAGAT
AGTACAACAAAGCTTGTTGGGTTACGAATGTTGCATTTGGGCGATAAAGG
ACATGCACCCGTTATGAATAAACATGACACAGTGGCGAATCTGATTTCAC
GCGTCAGGCGTGAGAAGAAGCTGGATATGATAGAGTATGGAGATAAAGAG
AAATTTGGTGATCTTTCGAAGAAGGATAAGTTATTGGAGCTTAAGGCTTA
CACCTTCAACTGTATTTGAGTGATACAAAATCGGAACTTTAAAGACGCAA
CGACAATCGAAGTCACAATATTATCCGGAAAAGTATACAGTATCAATATT
CCCGAGCGAAAGAATGCAGTCGACAATCCATTGAAAGTCGCTGATGTGAA
AGCACTCATTGCTAAACAAGCGAAAATTCCAACTCAAACTCAAGAACTTT
TTCATGAAGGGATTTCACTGAAAGATGATGAGATGAGGAAATGTAAGAGA
AGGTCTTTTTACAGAGCATTAAACAGTGGAATGGTAAATGGTAAGGTTGC
AGTAAACAAAGCGAATTTCTTCCAGATACTATATCATACTGTTTCTTCAA
TGACTAAAAACAAGATGGATTTCGACCTGGATCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034669XLOC_034669Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055040-proteinTCONS_00055040-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055040-exon-scaffold_248-1575043694:267233..267439TCONS_00055040-exon-scaffold_248-1575043694:267233..267439Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1575043694:266703..266915TCONS_00055040-exon-scaffold_248-1575043694:266703..266915Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1575043694:264993..266206TCONS_00055040-exon-scaffold_248-1575043694:264993..266206Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1510915933:267233..267439TCONS_00055040-exon-scaffold_248-1510915933:267233..267439Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1510915933:266703..266915TCONS_00055040-exon-scaffold_248-1510915933:266703..266915Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1510915933:264993..266206TCONS_00055040-exon-scaffold_248-1510915933:264993..266206Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1491911889:267233..267439TCONS_00055040-exon-scaffold_248-1491911889:267233..267439Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1491911889:266703..266915TCONS_00055040-exon-scaffold_248-1491911889:266703..266915Clytia hemisphaericaexon
TCONS_00055040-exon-scaffold_248-1491911889:264993..266206TCONS_00055040-exon-scaffold_248-1491911889:264993..266206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:264993..267439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14938	0.121391	0.451028	0.303367	5.33835	4.05925	3.96906	3.3562	5.28694	9.6152	2.16923	3.08407	100.259	76.8645	19.2548	26.2009	5.3266	6.35995	56.8219	89.6192	2.81637	3.34625	18.1838	19.646	61.6404	43.9671	40.2149	65.3249	0.607934	0.309694
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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