TCONS_00055042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055042
Unique NameTCONS_00055042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055042 ID=TCONS_00055042|Name=TCONS_00055042|organism=Clytia hemisphaerica|type=transcript|length=587bp
TGGTGTCCTTACCTTAAAATAAACCATGCTATATATCTCAAGTATTGGCA
ATatggaaaaggaaaatttattaaaactatttttaaatATCTCTAGCAAA
ATGATTAGTTACTCAAATGACTAAACATCAGCCTGATCGTTGTGCAAAAA
TCTCTTCAATTTCTTCCAGGGTTTTTCCTTTTGTTTCAGGAACATAAAAC
AGTGTAAACAAAAAGCTCAGCAACGCAAACCCAGCAAAAAACCAGAATGT
TCCTTGGGCGAAGAATGTAGACACCATTTTATGGAACAGATTTGTTGTTA
TGAAAACACATGTCCAATTTATGAGTGTTACAAAGCCTCCAACAAGTCCT
TTTGCTTTTGGTGGTAATAATTCTGACATTAATAACCAAGGTAGCGGCCC
CCATCCAATGGAAAATATTGCTATGTAGATGACAATACATGATATAGCAA
GAATAGAAATCTTGTGTGGCGAGAAAGTATGCGAGAACTTtccaaatatt
gaaattttattaTCATCCCCATCAACTtcaattaaatcaaaataaacacc
CAGTAAGAATTGACACAAAAACATAACAACACTACCA
Run BLAST on NCBI

transcript from alignment at scaffold_248:323454..324097-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055042 ID=TCONS_00055042|Name=TCONS_00055042|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at scaffold_248:323454..324097- (Clytia hemisphaerica)
TGGTGTCCTTACCTTAAAATAAACCATGCTATATATCTCAAGTATTGGCA
ATATGGAAAAGGAAAATTTATTAAAACTATTTTTAAATATCTCTAGCAAA
ATGATTAGTTACTCAAATGACTAAACATCAGCCTGATCGTTGTGCAAAAA
TCTCTTCAATTTCTTCCAGGGTTTTTCCTTTTGTTTCAGGAACATAAAAC
AGTGTAAACAAAAAGCTCAGCAACGCAAACCCAGCAAAAAACCAGAATGT
TCCTTGGGCGAAGAATGTAGACACCATTTTATGGAACAGGTTTGTTGTTA
TGAAAACACATGTCCAATTTATGANAGACACCATTTTATGGAACAGATTT
GTTGTTATGAAAACACATGTCCAATTTATGAGTGTTACAAAGCCTCCAAC
AAGTCCTTTTGCTTTTGGTGGTAATAATTCTGACATTAATAACCAAGGTA
GCGGCCCCCATCCAATGGAAAATATTGCTATGTAGATGACAATACATGAT
ATAGCAAGAATAGAAATCTTGTGTGGCGAGAAAGTATGCGAGAACTTTCC
AAATATTGAAATTTTATTATCATCCCCATCAACTTCAATTAAATCAAAAT
AAACACCCAGTAAGAATTGACACAAAAACATAACAACACTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034671XLOC_034671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055042-exon-scaffold_248-1575043694:323809..324097TCONS_00055042-exon-scaffold_248-1575043694:323809..324097Clytia hemisphaericaexon
TCONS_00055042-exon-scaffold_248-1575043694:323454..323751TCONS_00055042-exon-scaffold_248-1575043694:323454..323751Clytia hemisphaericaexon
TCONS_00055042-exon-scaffold_248-1510915933:323809..324097TCONS_00055042-exon-scaffold_248-1510915933:323809..324097Clytia hemisphaericaexon
TCONS_00055042-exon-scaffold_248-1510915933:323454..323751TCONS_00055042-exon-scaffold_248-1510915933:323454..323751Clytia hemisphaericaexon
TCONS_00055042-exon-scaffold_248-1491911889:323809..324097TCONS_00055042-exon-scaffold_248-1491911889:323809..324097Clytia hemisphaericaexon
TCONS_00055042-exon-scaffold_248-1491911889:323454..323751TCONS_00055042-exon-scaffold_248-1491911889:323454..323751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:323454..324097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3813	12.9008	8.13626	6.42483	6.23263	4.50988	2.90624	3.44626	1.40823	1.8792	1.17355	0.0885373	0.954402	0.123591	0	0	0	0	0	0	0	0	14.5944	6.91041	3.88537	5.22864	7.30957	2.57807	0	3.12327e-09
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003663Sugar/inositol_transpt
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022891substrate-specific transmembrane transporter activity
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0022891 substrate-specific transmembrane transporter activity
molecular_function GO:0022857 transmembrane transporter activity
Blast
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BLAST of TCONS_00055042 vs. Swiss-Prot (Human)
Match: GTR8 (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.928e-18
Identity = 59/151 (39.07%), Postives = 81/151 (53.64%), Query Frame = -2 
Query:  137 VVMFLCQFLLGVYFDLIEV-DGDDNKISIFGKFSHTFSPHKISI--LAISCIVIYIAIFSIGWGPLPWLLMSELLPPKAKGLVGGFVTLINWTCVFITTNLFHKMVSTFFAQGTXXXXXXXXXXXXXXXXFYVPETKGKTLEEIEEIFAQR 580
            VVM       G YF L +   G+ + ++I    S       + +  LA+  + ++IA F++GWGP+PWLLMSE+ P   KG+  G   L NW   F+ T  F  ++      G FW  + F + S LFTLF VPETKGKTLE+I   F  R
Sbjct:  327 VVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477
The following BLAST results are available for this feature:
BLAST of TCONS_00055042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTR81.928e-1839.07Solute carrier family 2, facilitated glucose trans... [more]
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