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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055045 ID=TCONS_00055045|Name=TCONS_00055045|organism=Clytia hemisphaerica|type=transcript|length=2183bpRun BLAST on NCBI protein sequence of TCONS_00055045-protein >TCONS_00055045-protein ID=TCONS_00055045-protein|Name=TCONS_00055045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MRVPIPVSSREAVLRVLRSISATGCQCPAHSQSFSGSPVHKCSAHASNDVRun BLAST on NCBI transcript from alignment at scaffold_248:386893..394929- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055045 ID=TCONS_00055045|Name=TCONS_00055045|organism=Clytia hemisphaerica|type=transcript|length=8037bp|location=Sequence derived from alignment at scaffold_248:386893..394929- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:386893..394929- >TCONS_00055045 ID=TCONS_00055045|Name=TCONS_00055045|organism=Clytia hemisphaerica|type=CDS|length=18642bp|location=Sequence derived from alignment at scaffold_248:386893..394929- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055045 vs. Swiss-Prot (Human)
Match: HOT (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Homo sapiens GN=ADHFE1 PE=1 SV=1) HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0 Identity = 286/462 (61.90%), Postives = 358/462 (77.49%), Query Frame = 3
Query: 366 VLRSISATGCQCPAHSQSFSGSPVHKCSAHASNDVEYAVEMAASNVRYGNGVTAEVGMDLANMKAQKVGVFTDKNLAKLPPVLETIKSLERSGINFSVFDDVRIEPTDASFQKAINYARAENFDHFVAVGGGSVIDTAKAANLYLCHPENELLDFVNAPIGKGLPIKKALKPLIAIPTTAGTGSETTGVAVFDYTPLQAKTGIGNRAIRPVLGIVDPLHTLHMPKHVTAYSGLDVFCHALESYTAIPYNQRSPRPTNPILRPAYQGSNPISDVWSKYAFKVTAKYLKRAMESPDDVEARSEMHLASVFAGIGFGNAGVHLCHGLSYALSGNIKNKTYKAKDYDVDYPLLPHGLSVIITAPAVFNFTAPSNPERHLECAEILGADITNARKEDAGPILADAIRKFMDGLGIDDGISAFGYTSEDIPKLVEGTLPQHRVTKLAPDGEPTAEEYAMIYEQSMKIY 1751
+LR + CQCP HS ++S +P S + +YA EMA SN+RYG VT EVGMDL NM A+ V + TDKNL+KLPPV + SL ++GI F+V+D+VR+EPTD+SF +AI +A+ FD +VAVGGGS +DT KAANLY P ++ LD+V+APIGKG P+ LKPLIA+PTT+GTGSETTGVA+FDY L+ K GI +RAI+P LG++DPLHTLHMP V A SG DV CHALESYT +PY+ RSP P+NPI RPAYQGSNPISD+W+ +A ++ AKYLKRA+ +PDD+EARS MHLAS FAGIGFGNAGVHLCHG+SY +SG + K YKAKDY+VD+PL+PHGLSV++T+PAVF FTA PERHLE AEILGAD AR +DAG +LAD +RKF+ L +DDG++A GY+ DIP LV+GTLPQ RVTKLAP + + E+ A ++E SMK+Y
Sbjct: 12 LLRQLQRAACQCPTHSHTYSQAPGLSPSGKTT---DYAFEMAVSNIRYGAAVTKEVGMDLKNMGAKNVCLMTDKNLSKLPPVQVAMDSLVKNGIPFTVYDNVRVEPTDSSFMEAIEFAQKGAFDAYVAVGGGSTMDTCKAANLYASSPHSDFLDYVSAPIGKGKPVSVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKIGITSRAIKPTLGLIDPLHTLHMPARVVANSGFDVLCHALESYTTLPYHLRSPCPSNPITRPAYQGSNPISDIWAIHALRIVAKYLKRAVRNPDDLEARSHMHLASAFAGIGFGNAGVHLCHGMSYPISGLV--KMYKAKDYNVDHPLVPHGLSVVLTSPAVFTFTAQMFPERHLEMAEILGADTRTARIQDAGLVLADTLRKFLFDLDVDDGLAAVGYSKADIPALVKGTLPQERVTKLAPCPQ-SEEDLAALFEASMKLY 467 The following BLAST results are available for this feature:
BLAST of TCONS_00055045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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