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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055048 ID=TCONS_00055048|Name=TCONS_00055048|organism=Clytia hemisphaerica|type=transcript|length=3196bp
caataagttaagaacacccgaaagcttaaaaaatatttaaaaagaaaaat
gcattTGAGTTCAATTTGTTTGATATTCCAGTTATCTAcattaaagaaat
tttaatttaaatcactatctACATTACACAATCGGAATTTAAAACCCTAT
CTCCGCAAAATAATCGGAATTTAAAACCCTATCTACACAGAATTATCTAC
AAAGAATTATCGGAATTTAAAACCCTATCTACATGAAATAATTGGAATTT
AAAAGCCTATTTACATAGCGTGATTGGTATATTTTCTCAATTACATAACA
ACGAGTGTATTTCGAAAATAATCtatattattaaaaaatatattttcatt
atgAGCTACAGTCACGGGCGTTATATTCATGTACACACTAACTAGACTGT
ACCACCCCGCCCACGggcgttttttatattttgaaaaaacttgcctTGTG
TCGAATTTCGCtttatcttttcagtcagcgaaGAAGAATTTGGTACAGGC
TTACTGCTAACAGACATCCCGTAAAATATCCATGTGTTTAGTTTTGAAGT
CAACTAACTTACTTACGGTTTACGCTCgaacaatcaaatcaatttttgag
CAATGGTTGATTGATTAAGCCCAATTACATCATAATTTTGAGATTCAAAC
AAGCAGATTGGTTTGAACGTTGAGCTGTTTTCTGTTTTACGTCACGTCAG
ATTTggcgaacgttcgaatttcaaaacattgcaATACCGTAGTTTGTTAA
GCAGAACAGAAAATAGCATGGTGGActtgtcatttttaaaacatgaCACC
GATCCAAAGGCTACAGCAATCACATATGATTTGACTTtcaataaaaagta
taaaagaaaaaaaaacatccttAGCTTTGATGAGCATTTCTTTTAGCAAA
AACCATATACCTATCAATTTTCTGTTTCGAGgaataaaggtttaaaaata
TGGTAGAATTATATAAAGGTGTACACAAATCTATCTTGAAGCCTGTATAA
TtcagaaaaagttgaaaagagcTTGCAATTCTAGGTAGTTAAAGTAATTT
TAGATAGAATGGATGGTTGTATGTCATAAAAATTGGACCTCCTCCCAAGG
GTTCCTAGAAAAGCCCTGGCGTGCCTTGAATAATATGATATAAACAATTT
TCTACAATGagacaaaaatttaaattaaaactgACACCCAACATTACGAA
ACCACCTGATATCCCCACAGGTTTCGTTAAATCATGAATGTTAGTTCCTT
TGTCGGTGAAAGTTCCATACGCGCTACCAATCAACAATCTTTATATTTGG
ATTagaatttcaattcagtattgTAAAATTAACagtatttgatcattttt
tccGTTTCATTTGCAGATCAAATTTCCAGTTGAATGAACCGTAATTGCCA
CGCATTTCGAAAAGTATTCCACTTTCCATCAATATCAGTAGATAACTGAC
CAACGTCTGGTGGGAATTTCCGTCGTCTCATTGTACCTTTCTTGGTTCTC
TCCGAACCTCTTTTATCTTCCCGTTTCTCGACAAAACCGTaaaatccgcc
atctttgtaGTCATAAGTTGTATCGAGCACTTCTAATTTGCCTGCAATCT
CCAAATCTTGCAGCGGCCGAGAATGTATTTGCAATGATGTATCAGTTAGA
ATCCATTGTTTCAACTCACCAAAGGTACATGTCTTACCAGCCCAATATTG
GTGGATGATATCAGCTTCGGCAACTCTTGAGTTCAACGGTGACCATTTTC
CGTTAACATCGTAATGGTAATCAGAGAAATATAATTCATTTCCAAACTCT
TTCGGTGAATTCTGGCTCCCAACACCCATCGCATACTTCATCTGACTCAA
AGACTTTAAACCGAAACAAAAACCAATCAAATCATAAATACAACCTCGAT
CAACACCCTGGGACGAACCCCGTCTCATGGAAATGTGACACGTTCTCAAC
AACGGGTCTTCAGGATGTTTCAATCTCAAGCATTTTCCATAAACATCAAC
TAAAGCTTTCATTTTATCTGCTGGTTGCAAGCTTTTGTATTCTTCTGGCA
GATAACTCTTCCAATTTTTATCACCCATCAATTCAGCAAATCTCTGCTCG
AATTTAGGTTCTCTATAGAACCTATTGATATTTTCCACGCCAAAGAATAA
CAACACATCTCTTCTTTTACCCAAATATTCAATAACTTTATCCATCTGAG
TATCTGAATACCCAAACGGATCCAGAAAGGTAACCATGGGTTTACAAGTT
GTTAATCGAACCTTTGACCCTTCAAATAACTCTTGGTCAGGCTCAAACTC
CTGGAACTGGCCTACAATGAACAGGATGTTAATCTGGGCCTTCACTGTGA
CAATTGTTTCATCATTCTTGGACTTACGGTGACTATGTTCGATGTTTATT
TGCCAGAAATCTTGCTTCTCTTCcaaccattttgtttctaaatcaGCAGA
AAGTAGATATTGGCGAACATTTCGTTTCAATTTCTCAATATAATCTTCTT
GCTTATCTTCAAACACGTATAAGAAACGTTTGAACTGCCAACTTTTGTTA
TATCGTTCTTTAAAAGTCTTGATCAAAGCTTCAAGAGAGACAAGTGGTGA
ACCATATTCAAGTGGGAAAGGTGGTTGTTTGGTTTCTTCTTCTTGTtcaa
cctttttctttttcccaCCTGCTTTCAATTTAGTGGTGCTCTTTCGTTTT
CCAGAAGCATTCTTTGGATCGAAAAAACAAGGTTCAGGCTCAACttcaaa
attaatttgtttACTGATGATGGCTTTTAATGGGTCTTTGACTGTCTTTT
CCGGTTGTTGAGGAGTCCGGTATTTTCCAGTACCACAGAAAGCATCAAAG
TATGTAAAGTCGTAACCAGTTGATGGTTCCCCTGTATTCAACGCGATGGC
AAATTTCTGTTGAAGATAACGATATAAAACAACTCTCTTCGAAAGACCAT
GTGGAGAGTCTTCTCTGTCGAAGAAATTCTTGGTGGCTgacatctttctt
ttttttgtttcttttcttttagtttgctgaaaaataaaatgaaataatgt
TCAGAAAAAATCCATTTTAGATGGATTACATTACATTTTATTACATTTGA
GCTATTCACAACAAAGTCTAAAACTCATTTTCTGAAACATGAAAGGAATT
CAGCTTTCAATATCTTTATattcatagtgcggaaaggggtctgaac Run BLAST on NCBI protein sequence of TCONS_00055048-protein >TCONS_00055048-protein ID=TCONS_00055048-protein|Name=TCONS_00055048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MSATKNFFDREDSPHGLSKRVVLYRYLQQKFAIALNTGEPSTGYDFTYFD
AFCGTGKYRTPQQPEKTVKDPLKAIISKQINFEVEPEPCFFDPKNASGKR
KSTTKLKAGGKKKKVEQEEETKQPPFPLEYGSPLVSLEALIKTFKERYNK
SWQFKRFLYVFEDKQEDYIEKLKRNVRQYLLSADLETKWLEEKQDFWQIN
IEHSHRKSKNDETIVTVKAQINILFIVGQFQEFEPDQELFEGSKVRLTTC
KPMVTFLDPFGYSDTQMDKVIEYLGKRRDVLLFFGVENINRFYREPKFEQ
RFAELMGDKNWKSYLPEEYKSLQPADKMKALVDVYGKCLRLKHPEDPLLR
TCHISMRRGSSQGVDRGCIYDLIGFCFGLKSLSQMKYAMGVGSQNSPKEF
GNELYFSDYHYDVNGKWSPLNSRVAEADIIHQYWAGKTCTFGELKQWILT
DTSLQIHSRPLQDLEIAGKLEVLDTTYDYKDGGFYGFVEKREDKRGSERT
KKGTMRRRKFPPDVGQLSTDIDGKWNTFRNAWQLRFIQLEI Run BLAST on NCBI transcript from alignment at scaffold_248:102849..106044 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055048 ID=TCONS_00055048|Name=TCONS_00055048|organism=Clytia hemisphaerica|type=transcript|length=3196bp|location=Sequence derived from alignment at scaffold_248:102849..106044 (Clytia hemisphaerica)
gttcagacccctttccgcactatgaatATAAAGATATTGAAAGCTGAATT
CCTTTCATGTTTCAGAAAATGAGTTTTAGACTTTGTTGTGAATAGCTCAA
ATGTAATAAAATGTAATGTAATCCATCTAAAATGGATTTTTTCTGAacat
tatttcattttatttttcagcaaactaaaagaaaagaaacaaaaaaaaga
aagatgtcAGCCACCAAGAATTTCTTCGACAGAGAAGACTCTCCACATGG
TCTTTCGAAGAGAGTTGTTTTATATCGTTATCTTCAACAGAAATTTGCCA
TCGCGTTGAATACAGGGGAACCATCAACTGGTTACGACTTTACATACTTT
GATGCTTTCTGTGGTACTGGAAAATACCGGACTCCTCAACAACCGGAAAA
GACAGTCAAAGACCCATTAAAAGCCATCATCAGTaaacaaattaattttg
aaGTTGAGCCTGAACCTTGTTTTTTCGATCCAAAGAATGCTTCTGGAAAA
CGAAAGAGCACCACTAAATTGAAAGCAGGtgggaaaaagaaaaaggttga
ACAAGAAGAAGAAACCAAACAACCACCTTTCCCACTTGAATATGGTTCAC
CACTTGTCTCTCTTGAAGCTTTGATCAAGACTTTTAAAGAACGATATAAC
AAAAGTTGGCAGTTCAAACGTTTCTTATACGTGTTTGAAGATAAGCAAGA
AGATTATATTGAGAAATTGAAACGAAATGTTCGCCAATATCTACTTTCTG
CtgatttagaaacaaaatggttgGAAGAGAAGCAAGATTTCTGGCAAATA
AACATCGAACATAGTCACCGTAAGTCCAAGAATGATGAAACAATTGTCAC
AGTGAAGGCCCAGATTAACATCCTGTTCATTGTAGGCCAGTTCCAGGAGT
TTGAGCCTGACCAAGAGTTATTTGAAGGGTCAAAGGTTCGATTAACAACT
TGTAAACCCATGGTTACCTTTCTGGATCCGTTTGGGTATTCAGATACTCA
GATGGATAAAGTTATTGAATATTTGGGTAAAAGAAGAGATGTGTTGTTAT
TCTTTGGCGTGGAAAATATCAATAGGTTCTATAGAGAACCTAAATTCGAG
CAGAGATTTGCTGAATTGATGGGTGATAAAAATTGGAAGAGTTATCTGCC
AGAAGAATACAAAAGCTTGCAACCAGCAGATAAAATGAAAGCTTTAGTTG
ATGTTTATGGAAAATGCTTGAGATTGAAACATCCTGAAGACCCGTTGTTG
AGAACGTGTCACATTTCCATGAGACGGGGTTCGTCCCAGGGTGTTGATCG
AGGTTGTATTTATGATTTGATTGGTTTTTGTTTCGGTTTAAAGTCTTTGA
GTCAGATGAAGTATGCGATGGGTGTTGGGAGCCAGAATTCACCGAAAGAG
TTTGGAAATGAATTATATTTCTCTGATTACCATTACGATGTTAACGGAAA
ATGGTCACCGTTGAACTCAAGAGTTGCCGAAGCTGATATCATCCACCAAT
ATTGGGCTGGTAAGACATGTACCTTTGGTGAGTTGAAACAATGGATTCTA
ACTGATACATCATTGCAAATACATTCTCGGCCGCTGCAAGATTTGGAGAT
TGCAGGCAAATTAGAAGTGCTCGATACAACTTATGACtacaaagatggcg
gattttACGGTTTTGTCGAGAAACGGGAAGATAAAAGAGGTTCGGAGAGA
ACCAAGAAAGGTACAATGAGACGACGGAAATTCCCACCAGACGTTGGTCA
GTTATCTACTGATATTGATGGAAAGTGGAATACTTTTCGAAATGCGTGGC
AATTACGGTTCATTCAACTGGAAATTTGATCTGCAAATGAAACggaaaaa
atgatcaaatactGTTAATTTTAcaatactgaattgaaattctAATCCAA
ATATAAAGATTGTTGATTGGTAGCGCGTATGGAACTTTCACCGACAAAGG
AACTAACATTCATGATTTAACGAAACCTGTGGGGATATCAGGTGGTTTCG
TAATGTTGGGTGTcagttttaatttaaatttttgtctCATTGTAGAAAAT
TGTTTATATCATATTATTCAAGGCACGCCAGGGCTTTTCTAGGAACCCTT
GGGAGGAGGTCCAATTTTTATGACATACAACCATCCATTCTATCTAAAAT
TACTTTAACTACCTAGAATTGCAAgctcttttcaactttttctgaATTAT
ACAGGCTTCAAGATAGATTTGTGTACACCTTTATATAATTCTACCAtatt
tttaaacctttattcCTCGAAACAGAAAATTGATAGGTATATGGTTTTTG
CTAAAAGAAATGCTCATCAAAGCTaaggatgtttttttttcttttatact
ttttattgaAAGTCAAATCATATGTGATTGCTGTAGCCTTTGGATCGGTG
tcatgttttaaaaatgacaagTCCACCATGCTATTTTCTGTTCTGCTTAA
CAAACTACGGTATtgcaatgttttgaaattcgaacgttcgccAAATCTGA
CGTGACGTAAAACAGAAAACAGCTCAACGTTCAAACCAATCTGCTTGTTT
GAATCTCAAAATTATGATGTAATTGGGCTTAATCAATCAACCATTGctca
aaaattgatttgattgttcGAGCGTAAACCGTAAGTAAGTTAGTTGACTT
CAAAACTAAACACATGGATATTTTACGGGATGTCTGTTAGCAGTAAGCCT
GTACCAAATTCTTCttcgctgactgaaaagataaaGCGAAATTCGACACA
aggcaagttttttcaaaatataaaaaacgccCGTGGGCGGGGTGGTACAG
TCTAGTTAGTGTGTACATGAATATAACGCCCGTGACTGTAGCTcataatg
aaaatatattttttaataatataGATTATTTTCGAAATACACTCGTTGTT
ATGTAATTGAGAAAATATACCAATCACGCTATGTAAATAGGCTTTTAAAT
TCCAATTATTTCATGTAGATAGGGTTTTAAATTCCGATAATTCTTTGTAG
ATAATTCTGTGTAGATAGGGTTTTAAATTCCGATTATTTTGCGGAGATAG
GGTTTTAAATTCCGATTGTGTAATGTagatagtgatttaaattaaaattt
ctttaatgTAGATAACTGGAATATCAAACAAATTGAACTCAaatgcattt
ttctttttaaatattttttaagctttcgggtgttcttaacttattg Coding sequence (CDS) from alignment at scaffold_248:102849..106044 >TCONS_00055048 ID=TCONS_00055048|Name=TCONS_00055048|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_248:102849..106044 (Clytia hemisphaerica)
atgtcAGCCACCAAGAATTTCTTCGACAGAGAAGACTCTCCACATGGTCT
TTCGAAGAGAGTTGTTTTATATCGTTATCTTCAACAGAAATTTGCCATCG
CGTTGAATACAGGGGAACCATCAACTGGTTACGACTTTACATACTTTGAT
GCTTTCTGTGGTACTGGAAAATACCGGACTCCTCAACAACCGGAAAAGAC
AGTCAAAGACCCATTAAAAGCCATCATCAGTaaacaaattaattttgaaG
TTGAGCCTGAACCTTGTTTTTTCGATCCAAAGAATGCTTCTGGAAAACGA
AAGAGCACCACTAAATTGAAAGCAGGtgggaaaaagaaaaaggttgaACA
AGAAGAAGAAACCAAACAACCACCTTTCCCACTTGAATATGGTTCACCAC
TTGTCTCTCTTGAAGCTTTGATCAAGACTTTTAAAGAACGATATAACAAA
AGTTGGCAGTTCAAACGTTTCTTATACGTGTTTGAAGATAAGCAAGAAGA
TTATATTGAGAAATTGAAACGAAATGTTCGCCAATATCTACTTTCTGCtg
atttagaaacaaaatggttgGAAGAGAAGCAAGATTTCTGGCAAATAAAC
ATCGAACATAGTCACCGTAAGTCCAAGAATGATGAAACAATTGTCACAGT
GAAGGCCCAGATTAACATCCTGTTCATTGTAGGCCAGTTCCAGGAGTTTG
AGCCTGACCAAGAGTTATTTGAAGGGTCAAAGGTTCGATTAACAACTTGT
AAACCCATGGTTACCTTTCTGGATCCGTTTGGGTATTCAGATACTCAGAT
GGATAAAGTTATTGAATATTTGGGTAAAAGAAGAGATGTGTTGTTATTCT
TTGGCGTGGAAAATATCAATAGGTTCTATAGAGAACCTAAATTCGAGCAG
AGATTTGCTGAATTGATGGGTGATAAAAATTGGAAGAGTTATCTGCCAGA
AGAATACAAAAGCTTGCAACCAGCAGATAAAATGAAAGCTTTAGTTGATG
TTTATGGAAAATGCTTGAGATTGAAACATCCTGAAGACCCGTTGTTGAGA
ACGTGTCACATTTCCATGAGACGGGGTTCGTCCCAGGGTGTTGATCGAGG
TTGTATTTATGATTTGATTGGTTTTTGTTTCGGTTTAAAGTCTTTGAGTC
AGATGAAGTATGCGATGGGTGTTGGGAGCCAGAATTCACCGAAAGAGTTT
GGAAATGAATTATATTTCTCTGATTACCATTACGATGTTAACGGAAAATG
GTCACCGTTGAACTCAAGAGTTGCCGAAGCTGATATCATCCACCAATATT
GGGCTGGTAAGACATGTACCTTTGGTGAGTTGAAACAATGGATTCTAACT
GATACATCATTGCAAATACATTCTCGGCCGCTGCAAGATTTGGAGATTGC
AGGCAAATTAGAAGTGCTCGATACAACTTATGACtacaaagatggcggat
tttACGGTTTTGTCGAGAAACGGGAAGATAAAAGAGGTTCGGAGAGAACC
AAGAAAGGTACAATGAGACGACGGAAATTCCCACCAGACGTTGGTCAGTT
ATCTACTGATATTGATGGAAAGTGGAATACTTTTCGAAATGCGTGGCAAT
TACGGTTCATTCAACTGGAAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055048-exon-scaffold_248-1491911889:102849..106044 | TCONS_00055048-exon-scaffold_248-1491911889:102849..106044 | Clytia hemisphaerica | exon |
| TCONS_00055048-exon-scaffold_248-1510915933:102849..106044 | TCONS_00055048-exon-scaffold_248-1510915933:102849..106044 | Clytia hemisphaerica | exon |
| TCONS_00055048-exon-scaffold_248-1575043694:102849..106044 | TCONS_00055048-exon-scaffold_248-1575043694:102849..106044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:102849..106044 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031009 | Tcm_partner |
Blast
The following BLAST results are available for this feature:
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