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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055049 ID=TCONS_00055049|Name=TCONS_00055049|organism=Clytia hemisphaerica|type=transcript|length=1567bp
GTTAAATCAAACATTTGGTCGTCCACAACCATCATTTAAGTACAACAAAC
ACATCACCGAAGCGATCAATTTCCTTTTcttaaatatctttccaacataT
CTTGGCTTCGGAGCGTTCTTTAACCTCGTCATCGTCATATactttatcaa
aacaaattacaAAAAGCTCACAAGAACTACACCGTACCATTTCTTAATCA
TCAATCTGGCTGTGACTGATTTTTCAACTTGTGTTGGGTTAAGCATTCTA
ATTCACTATTGGGTACAAAGGTCTTGGAAACTCGGCGAAATCGGTTGTTT
TTTCATGGCAGatttcttcaaaaaagtttGCTTGCTCTCCTCATGTTGGT
ATTTAGTTCTTCTCTCTTACACGAGATATCGAAGCATTGTCAAGCCGTTC
GAAAGGAGACTTAGCAAGCGAAAAATAACCTACGCTTGTGTACTGGTATG
GATGGCATCGATTGGGATTTTCCTAAAATTCTTTATCAATCGAAAATTGA
TTGTATATGGGGGAGGGTTAAGATGTTCGTTGCAACATATCGACATGACA
ATCATGATTACGTACATGGTCGTTGGTTATTGTCTAGATAGTTTTATCCC
GATCGGAATACTGGTTTATCTATActggaaaattaagcaaaaattggACT
GCGATCAACTTCGGAATACGTTTCCCGATAATAGCCCGATTTGGAAACGA
AATCAAACAGCGTTAAGAACTATGAAAGCTCTAACTGTTTTGTACGTTTT
CACGATAATACCGGGACGCGTTTTTCACTCCATAGGACTGGGCCTAGCAA
CGCATGCACTGGAAACTGGCAATAAATACCTTTTGGATTATGCTATCGTT
TTTACAAATATCTTGTCCCCTTTTGCATTTTATTCGAATaacattttaaa
catttttgtaTATGCCAAGCTGATTGTAGGTTTCAAGAAGTTTCTGTTGT
CGATATTAACCCTGGGAATGTACAGGAGAAGAACTATCGTGGACGGAAAG
ACACAGAATTTGAGTTTAGAGCAACTTGGCAATGTAAGAAAGACAGACAA
CCACCATTCTATGACTAACGAAACGACAAAAAATCAGGTAACCGTCATGC
CCTAAACCGAAGCCCAAAACAATCATTGCTATCGGTGGTGAATTGATTCA
AAAGCTGCTCAAGAGAGGAAAAGGTCCGAGTTAAACAGGGTCGAATGACG
TCAAATATCTTAGGTCATCGTATTGAGACGCTCacaaatatttgacgtca
gttgACTCGTGTAAACTTAAATCCAGCTTATTAAAGCCTCAAGAATAGAC
ACTCTCTAAGAATGAGTCATATTATCTCTCTGTCAGGGAAATGAAagtta
aaaataatcaaaatatgtaaaagatcaaaattttttATAGGATCCATGGT
AATACAAAACATACCGCAATTAACGCGGTaatttcaaggggaattggatt
ttcatcgaagaatggagcgtatcgaatattAGATCGTCGTTTTTTTAGTC
ATTCttattgacggtgactttcaatattatctaataatggagcatatcga
atagtagaacgtcgaat Run BLAST on NCBI protein sequence of TCONS_00055049-protein >TCONS_00055049-protein ID=TCONS_00055049-protein|Name=TCONS_00055049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
LNQTFGRPQPSFKYNKHITEAINFLFLNIFPTYLGFGAFFNLVIVIYFIK
TNYKKLTRTTPYHFLIINLAVTDFSTCVGLSILIHYWVQRSWKLGEIGCF
FMADFFKKVCLLSSCWYLVLLSYTRYRSIVKPFERRLSKRKITYACVLVW
MASIGIFLKFFINRKLIVYGGGLRCSLQHIDMTIMITYMVVGYCLDSFIP
IGILVYLYWKIKQKLDCDQLRNTFPDNSPIWKRNQTALRTMKALTVLYVF
TIIPGRVFHSIGLGLATHALETGNKYLLDYAIVFTNILSPFAFYSNNILN
IFVYAKLIVGFKKFLLSILTLGMYRRRTIVDGKTQNLSLEQLGNVRKTDN
HHSMTNETTKNQVTVMP Run BLAST on NCBI transcript from alignment at scaffold_248:269620..271186 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055049 ID=TCONS_00055049|Name=TCONS_00055049|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_248:269620..271186 (Clytia hemisphaerica)
attcgacgttctactattcgatatgctccattattagataatattgaaag
tcaccgtcaataaGAATGACTAAAAAAACGACGATCTaatattcgatacg
ctccattcttcgatgaaaatccaattccccttgaaattACCGCGTTAATT
GCGGTATGTTTTGTATTACCATGGATCCTATaaaaaattttgatctttta
catattttgattatttttaactTTCATTTCCCTGACAGAGAGATAATATG
ACTCATTCTTAGAGAGTGTCTATTCTTGAGGCTTTAATAAGCTGGATTTA
AGTTTACACGAGTcaactgacgtcaaatatttgtGAGCGTCTCAATACGA
TGACCTAAGATATTTGACGTCATTCGACCCTGTTTAACTCGGACCTTTTC
CTCTCTTGAGCAGCTTTTGAATCAATTCACCACCGATAGCAATGATTGTT
TTGGGCTTCGGTTTAGGGCATGACGGTTACCTGATTTTTTGTCGTTTCGT
TAGTCATAGAATGGTGGTTGTCTGTCTTTCTTACATTGCCAAGTTGCTCT
AAACTCAAATTCTGTGTCTTTCCGTCCACGATAGTTCTTCTCCTGTACAT
TCCCAGGGTTAATATCGACAACAGAAACTTCTTGAAACCTACAATCAGCT
TGGCATAtacaaaaatgtttaaaatgttATTCGAATAAAATGCAAAAGGG
GACAAGATATTTGTAAAAACGATAGCATAATCCAAAAGGTATTTATTGCC
AGTTTCCAGTGCATGCGTTGCTAGGCCCAGTCCTATGGAGTGAAAAACGC
GTCCCGGTATTATCGTGAAAACGTACAAAACAGTTAGAGCTTTCATAGTT
CTTAACGCTGTTTGATTTCGTTTCCAAATCGGGCTATTATCGGGAAACGT
ATTCCGAAGTTGATCGCAGTccaatttttgcttaattttccagTATAGAT
AAACCAGTATTCCGATCGGGATAAAACTATCTAGACAATAACCAACGACC
ATGTACGTAATCATGATTGTCATGTCGATATGTTGCAACGAACATCTTAA
CCCTCCCCCATATACAATCAATTTTCGATTGATAAAGAATTTTAGGAAAA
TCCCAATCGATGCCATCCATACCAGTACACAAGCGTAGGTTATTTTTCGC
TTGCTAAGTCTCCTTTCGAACGGCTTGACAATGCTTCGATATCTCGTGTA
AGAGAGAAGAACTAAATACCAACATGAGGAGAGCAAGCaaacttttttga
agaaatCTGCCATGAAAAAACAACCGATTTCGCCGAGTTTCCAAGACCTT
TGTACCCAATAGTGAATTAGAATGCTTAACCCAACACAAGTTGAAAAATC
AGTCACAGCCAGATTGATGATTAAGAAATGGTACGGTGTAGTTCTTGTGA
GCTTTTtgtaatttgttttgataaagtATATGACGATGACGAGGTTAAAG
AACGCTCCGAAGCCAAGAtatgttggaaagatatttaagAAAAGGAAATT
GATCGCTTCGGTGATGTGTTTGTTGTACTTAAATGATGGTTGTGGACGAC
CAAATGTTTGATTTAAC Coding sequence (CDS) from alignment at scaffold_248:269620..271186 >TCONS_00055049 ID=TCONS_00055049|Name=TCONS_00055049|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_248:269620..271186 (Clytia hemisphaerica)
TTAGGGCATGACGGTTACCTGATTTTTTGTCGTTTCGTTAGTCATAGAAT
GGTGGTTGTCTGTCTTTCTTACATTGCCAAGTTGCTCTAAACTCAAATTC
TGTGTCTTTCCGTCCACGATAGTTCTTCTCCTGTACATTCCCAGGGTTAA
TATCGACAACAGAAACTTCTTGAAACCTACAATCAGCTTGGCATAtacaa
aaatgtttaaaatgttATTCGAATAAAATGCAAAAGGGGACAAGATATTT
GTAAAAACGATAGCATAATCCAAAAGGTATTTATTGCCAGTTTCCAGTGC
ATGCGTTGCTAGGCCCAGTCCTATGGAGTGAAAAACGCGTCCCGGTATTA
TCGTGAAAACGTACAAAACAGTTAGAGCTTTCATAGTTCTTAACGCTGTT
TGATTTCGTTTCCAAATCGGGCTATTATCGGGAAACGTATTCCGAAGTTG
ATCGCAGTccaatttttgcttaattttccagTATAGATAAACCAGTATTC
CGATCGGGATAAAACTATCTAGACAATAACCAACGACCATGTACGTAATC
ATGATTGTCATGTCGATATGTTGCAACGAACATCTTAACCCTCCCCCATA
TACAATCAATTTTCGATTGATAAAGAATTTTAGGAAAATCCCAATCGATG
CCATCCATACCAGTACACAAGCGTAGGTTATTTTTCGCTTGCTAAGTCTC
CTTTCGAACGGCTTGACAATGCTTCGATATCTCGTGTAAGAGAGAAGAAC
TAAATACCAACATGAGGAGAGCAAGCaaacttttttgaagaaatCTGCCA
TGAAAAAACAACCGATTTCGCCGAGTTTCCAAGACCTTTGTACCCAATAG
TGAATTAGAATGCTTAACCCAACACAAGTTGAAAAATCAGTCACAGCCAG
ATTGATGATTAAGAAATGGTACGGTGTAGTTCTTGTGAGCTTTTtgtaat
ttgttttgataaagtATATGACGATGACGAGGTTAAAGAACGCTCCGAAG
CCAAGAtatgttggaaagatatttaagAAAAGGAAATTGATCGCTTCGGT
GATGTGTTTGTTGTACTTAAATGATGGTTGTGGACGACCAAATGTTTGAT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055049-exon-scaffold_248-1491911889:269620..271186 | TCONS_00055049-exon-scaffold_248-1491911889:269620..271186 | Clytia hemisphaerica | exon |
| TCONS_00055049-exon-scaffold_248-1510915933:269620..271186 | TCONS_00055049-exon-scaffold_248-1510915933:269620..271186 | Clytia hemisphaerica | exon |
| TCONS_00055049-exon-scaffold_248-1575043694:269620..271186 | TCONS_00055049-exon-scaffold_248-1575043694:269620..271186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:269620..271186 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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