TCONS_00055055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055055
Unique NameTCONS_00055055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055055 ID=TCONS_00055055|Name=TCONS_00055055|organism=Clytia hemisphaerica|type=transcript|length=1837bp
TTTTAGactaataaaagaaaacaaaaaaaaagggTAATAGATACAAAACA
TGTCACATGATGAGAATAAACCAATCAAAGTGTTGGAATTTTACAGTGGA
ATCGGTGGAATGCATTATGCTTTGAAGAGGTCTGGAATCAAGTATGACGT
CATTGGAGCATTTGATATCAATACAAATGCCAATGAAGTATACAAATACA
ACTTTCCAGATGTCCGTTTAATGCAGAAAAATTTAGAAGGTTTGACAGTG
GTAGATTTAGATAAATGGGCGGCACAATGTTGGACAATGTCTCCGCCCTG
TCAACCATATACTCGCCAAGGAAAACAAGAAGCATCGAAAGATGCCAGAG
CAAAAAGCTTTCTACATATCCTAGATTTATTTTCTCAAATGAAAACCCCA
CCAACATATATTTTGATTGAGAATGTCAAAGGTTTTGATGTATCTGACAC
ACGTAAACATCTTTTGGAAACGTTAAGGTCACGTGGTTATAGTATCCAAG
AATTTTTAATATCCCCTGTAGAGCTTGGAGTACCAAATTCGAGGTTGAGA
TATTACTTACTAGCAAAATTGAATGGAGATAAGAATAAATcactaaatga
aaatttagagtttgaaaatattgaatctAAGAGTATAAGTCATTATTTGA
ACAAGAATGATGAAAGTTTTGATGAAAGAAGTTCCTTGATATCTGATAAT
GTTTTGCAACGTTTTTGGAAAATTATGGATATCGTTCATGAAGATTCTAT
CGGCTCCTGTTGTTTTACAAAGGCTTATGGGAAATATATTGAAGGGACTG
Gttcaatatttacaaaaatctcaaaatcacaagcagaagaaattttcaag
aaaattaaatCACTCCCAGAGGGCCAGAATGAAGAACAGTTTCAGCTACT
TCGCTCTTTGAAATTACGTTATTTTACACCGATAGAAATTTCAAGGCTTT
TGTGTTTTCCAGATGATTTCTCTTTTCCGGATAAAATGACTGTCCGACAG
CGCTATCAATTACTAGGTAACAGCGTTAATGTTTATACTATAGGTTATTT
AATGAAAGAGTATCTTTTTATTTAGGacaattgttttttaaattttggga
aataaAATGATGGAAGCCTCTACTgctagttttttttttgcattttcggA
TATGAAGTTTCCCTTTCAGAATCAANGAGAATGATGAAAGTTTTGATGAA
GGAAGTTCCTTGATATCTGATAATGTTTTGCAACGTTTTTGGAAAATTAT
GGATATAGTTCATGAAGATTCTATCGGCTCCTGTTGTTTTACAAAGGCTT
ATGGGAAATATATTGAAGGGACTGGttcaatatttacaaaaatctcaaaa
tcacaagcagaagaaattttcaagaaaattaaatCACTCCCAGAGGGCCA
GAATGAAGAACAGTTTCAGCTACTTCGCTCTTTGAAATTACGTTATTTTA
CACCGATAGAAATTTCAAGGCTTTTGTGTTTTCCAGATGATTTCTCTTTT
CCGGATAAAATGACTGTCCGACAGCGCTATCAATTACTAGGTAACAGCGT
TAATGTTTATACTATAGGTTATTTAATGAAAGAGTATCTTTTTATTTAGG
acaattgttttttaaattttgggaaataaAATGATGGAAGCCTCTACTgc
tagttttttttttgcattttcggATATGAAGTTTCCCTTtcagaatcaaa
taaataacttgAAGGTGGTGAATTTTGGCCAAGTTTTCTGTTAACTTTCC
AAAACTTTAATCTAATTAACCCTTAGACAAAAAAGACTCTCGTTGTCATT
CCTTAAAATCCAGTGCTAGAAAAAACTCTTATCCAAG
Run BLAST on NCBI

protein sequence of TCONS_00055055-protein

>TCONS_00055055-protein ID=TCONS_00055055-protein|Name=TCONS_00055055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MSHDENKPIKVLEFYSGIGGMHYALKRSGIKYDVIGAFDINTNANEVYKY
NFPDVRLMQKNLEGLTVVDLDKWAAQCWTMSPPCQPYTRQGKQEASKDAR
AKSFLHILDLFSQMKTPPTYILIENVKGFDVSDTRKHLLETLRSRGYSIQ
EFLISPVELGVPNSRLRYYLLAKLNGDKNKSLNENLEFENIESKSISHYL
NKNDESFDERSSLISDNVLQRFWKIMDIVHEDSIGSCCFTKAYGKYIEGT
GSIFTKISKSQAEEIFKKIKSLPEGQNEEQFQLLRSLKLRYFTPIEISRL
LCFPDDFSFPDKMTVRQRYQLLGNSVNVYTIGYLMKEYLFI
Run BLAST on NCBI

transcript from alignment at scaffold_248:384949..386785

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055055 ID=TCONS_00055055|Name=TCONS_00055055|organism=Clytia hemisphaerica|type=transcript|length=1837bp|location=Sequence derived from alignment at scaffold_248:384949..386785 (Clytia hemisphaerica)
CTTGGATAAGAGTTTTTTCTAGCACTGGATTTTAAGGAATGACAACGAGA
GTCTTTTTTGTCTAAGGGTTAATTAGATTAAAGTTTTGGAAAGTTAACAG
AAAACTTGGCCAAAATTCACCACCTTcaagttatttatttgattctgaAA
GGGAAACTTCATATccgaaaatgcaaaaaaaaaactagcAGTAGAGGCTT
CCATCATTttatttcccaaaatttaaaaaacaattgtCCTAAATAAAAAG
ATACTCTTTCATTAAATAACCTATAGTATAAACATTAACGCTGTTACCTA
GTAATTGATAGCGCTGTCGGACAGTCATTTTATCCGGAAAAGAGAAATCA
TCTGGAAAACACAAAAGCCTTGAAATTTCTATCGGTGTAAAATAACGTAA
TTTCAAAGAGCGAAGTAGCTGAAACTGTTCTTCATTCTGGCCCTCTGGGA
GTGatttaattttcttgaaaatttcttctgcttgtgattttgagattttt
gtaaatattgaaCCAGTCCCTTCAATATATTTCCCATAAGCCTTTGTAAA
ACAACAGGAGCCGATAGAATCTTCATGAACTATATCCATAATTTTCCAAA
AACGTTGCAAAACATTATCAGATATCAAGGAACTTCCTTCATCAAAACTT
TCATCATTCTCNTTGATTCTGAAAGGGAAACTTCATATccgaaaatgcaa
aaaaaaaactagcAGTAGAGGCTTCCATCATTttatttcccaaaatttaa
aaaacaattgtCCTAAATAAAAAGATACTCTTTCATTAAATAACCTATAG
TATAAACATTAACGCTGTTACCTAGTAATTGATAGCGCTGTCGGACAGTC
ATTTTATCCGGAAAAGAGAAATCATCTGGAAAACACAAAAGCCTTGAAAT
TTCTATCGGTGTAAAATAACGTAATTTCAAAGAGCGAAGTAGCTGAAACT
GTTCTTCATTCTGGCCCTCTGGGAGTGatttaattttcttgaaaatttct
tctgcttgtgattttgagatttttgtaaatattgaaCCAGTCCCTTCAAT
ATATTTCCCATAAGCCTTTGTAAAACAACAGGAGCCGATAGAATCTTCAT
GAACGATATCCATAATTTTCCAAAAACGTTGCAAAACATTATCAGATATC
AAGGAACTTCTTTCATCAAAACTTTCATCATTCTTGTTCAAATAATGACT
TATACTCTTagattcaatattttcaaactctaaattttcatttagtgATT
TATTCTTATCTCCATTCAATTTTGCTAGTAAGTAATATCTCAACCTCGAA
TTTGGTACTCCAAGCTCTACAGGGGATATTAAAAATTCTTGGATACTATA
ACCACGTGACCTTAACGTTTCCAAAAGATGTTTACGTGTGTCAGATACAT
CAAAACCTTTGACATTCTCAATCAAAATATATGTTGGTGGGGTTTTCATT
TGAGAAAATAAATCTAGGATATGTAGAAAGCTTTTTGCTCTGGCATCTTT
CGATGCTTCTTGTTTTCCTTGGCGAGTATATGGTTGACAGGGCGGAGACA
TTGTCCAACATTGTGCCGCCCATTTATCTAAATCTACCACTGTCAAACCT
TCTAAATTTTTCTGCATTAAACGGACATCTGGAAAGTTGTATTTGTATAC
TTCATTGGCATTTGTATTGATATCAAATGCTCCAATGACGTCATACTTGA
TTCCAGACCTCTTCAAAGCATAATGCATTCCACCGATTCCACTGTAAAAT
TCCAACACTTTGATTGGTTTATTCTCATCATGTGACATGTTTTGTATCTA
TTAccctttttttttgttttcttttattagtCTAAAA

Coding sequence (CDS) from alignment at scaffold_248:384949..386785

>TCONS_00055055 ID=TCONS_00055055|Name=TCONS_00055055|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_248:384949..386785 (Clytia hemisphaerica)
CTAAATAAAAAGATACTCTTTCATTAAATAACCTATAGTATAAACATTAA
CGCTGTTACCTAGTAATTGATAGCGCTGTCGGACAGTCATTTTATCCGGA
AAAGAGAAATCATCTGGAAAACACAAAAGCCTTGAAATTTCTATCGGTGT
AAAATAACGTAATTTCAAAGAGCGAAGTAGCTGAAACTGTTCTTCATTCT
GGCCCTCTGGGAGTGatttaattttcttgaaaatttcttctgcttgtgat
tttgagatttttgtaaatattgaaCCAGTCCCTTCAATATATTTCCCATA
AGCCTTTGTAAAACAACAGGAGCCGATAGAATCTTCATGAACGATATCCA
TAATTTTCCAAAAACGTTGCAAAACATTATCAGATATCAAGGAACTTCTT
TCATCAAAACTTTCATCATTCTTGTTCAAATAATGACTTATACTCTTaga
ttcaatattttcaaactctaaattttcatttagtgATTTATTCTTATCTC
CATTCAATTTTGCTAGTAAGTAATATCTCAACCTCGAATTTGGTACTCCA
AGCTCTACAGGGGATATTAAAAATTCTTGGATACTATAACCACGTGACCT
TAACGTTTCCAAAAGATGTTTACGTGTGTCAGATACATCAAAACCTTTGA
CATTCTCAATCAAAATATATGTTGGTGGGGTTTTCATTTGAGAAAATAAA
TCTAGGATATGTAGAAAGCTTTTTGCTCTGGCATCTTTCGATGCTTCTTG
TTTTCCTTGGCGAGTATATGGTTGACAGGGCGGAGACATTGTCCAACATT
GTGCCGCCCATTTATCTAAATCTACCACTGTCAAACCTTCTAAATTTTTC
TGCATTAAACGGACATCTGGAAAGTTGTATTTGTATACTTCATTGGCATT
TGTATTGATATCAAATGCTCCAATGACGTCATACTTGATTCCAGACCTCT
TCAAAGCATAATGCATTCCACCGATTCCACTGTAAAATTCCAACACTTTG
ATTGGTTTATTCTCATCATGTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034682XLOC_034682Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055055-proteinTCONS_00055055-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055055-exon-scaffold_248-1491911889:384949..386785TCONS_00055055-exon-scaffold_248-1491911889:384949..386785Clytia hemisphaericaexon
TCONS_00055055-exon-scaffold_248-1510915933:384949..386785TCONS_00055055-exon-scaffold_248-1510915933:384949..386785Clytia hemisphaericaexon
TCONS_00055055-exon-scaffold_248-1575043694:384949..386785TCONS_00055055-exon-scaffold_248-1575043694:384949..386785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:384949..386785 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.75803	8.07532	4.61409	4.39347	4.46698	3.20475	4.93105	4.74754	2.1853	2.70685	2.22992	1.33524	1.69572	1.92659	1.74478	2.25753	2.96104	2.78345	0.718134	0.727235	1.87523	1.26409	9.59483	8.72309	2.76089	3.19488	1.10561	1.27561	3.70071	4.38653
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001525C5_MeTfrase
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
Blast
[Close]
BLAST of TCONS_00055055 vs. Swiss-Prot (Human)
Match: TRDMT (tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 4.003e-96
Identity = 162/389 (41.65%), Postives = 223/389 (57.33%), Query Frame = 2 
Query:   68 KPIKVLEFYSGIGGMHYALKRSGIKYDVIGAFDINTNANEVYKYNFPDVRLMQKNLEGLTVVDLDKWAAQCWTMSPPCQPYTRQGKQEASKDARAKSFLHILDLFSQMKTPPTYILIENVKGFDVSDTRKHLLETLRSRGYSIQEFLISPVELGVPNSRLRYYLLAKL---------------------------------NGDKNKSLNENLEFEN-------------IESKSISHYLNKNDESF-------------DERSSLISDNVLQRFWKIMDIVHEDSIGSCCFTKAYGKYIEGTGSIFTKISKSQAEEIFKKIKSLPEGQNEEQFQLLRSLKLRYFTPIEISRLLCFPDDFSFPDKMTVRQRYQLLGNSVNVYTIGYLMK 1057
            +P++VLE YSG+GGMH+AL+ S I   V+ A D+NT ANEVYKYNFP  +L+ K +EG+T+ + D+ +     MSPPCQP+TR G+Q    D+R  SFLHILD+  +++  P YIL+ENVKGF+VS TR  L++T+ + G+  QEFL+SP  LG+PNSRLRY+L+AKL                                 N  + K++  N+ F+              +E+    H  N+ D                D    L+    L R+  ++DIV      S CFTK YG YIEGTGS+       Q E I+K + +L +   EEQ   L  LKLRYFTP EI+ LL FP +F FP+K+TV+QRY+LLGNS+NV+ +  L+K
Sbjct:    2 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQ---EEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK 387

HSP 2 Score: 121.324 bits (303), Expect = 1.417e-29
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 1 
Query: 1183 DESFDEGSSLISDNVLQRFWKIMDIVHEDSIGSCCFTKAYGKYIEGTGSIFTKISKSQAEEIFKKIKSLPEGQNEEQFQLLRSLKLRYFTPIEISRLLCFPDDFSFPDKMTVRQRYQLLGNSVNVYTIGYLMK 1581
            ++  D    L+    L R+  ++DIV      S CFTK YG YIEGTGS+       Q E I+K + +L +   EEQ   L  LKLRYFTP EI+ LL FP +F FP+K+TV+QRY+LLGNS+NV+ +  L+K
Sbjct:  258 EDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQ---EEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK 387
The following BLAST results are available for this feature:
BLAST of TCONS_00055055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRDMT4.003e-9641.65tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo... [more]
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