TCONS_00055058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055058
Unique NameTCONS_00055058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055058 ID=TCONS_00055058|Name=TCONS_00055058|organism=Clytia hemisphaerica|type=transcript|length=818bp
CAAATTCACGCATGTTAAGGGAACCAAACGATAtcagaaaaagcaaaaca
atcgtAATGATGAACCTCAGGATTTTCTCGCAATCCTGGACAACTTTCCC
ACAGAAATAATCTCTCTTGTGAACAATTGTTTCAGCAACCAAAACCAACA
AATACAATTCAGGAACCACGATTTGTCACATCATCCTCAACAAACATTCA
ATCGTCAACATCCCCTACATCATCTACCACCCCAGCACCCAACAATGGAA
CCAACATTTCCAAGGAATCTACTGGGACAGTGACTGCCCTTACTGATGCT
GACCCGACTACCAAAACTACTTCTAAACCTACACTGAATATGTTTTCGTT
TGTCAATATACAAGGACTTTGCCCACAAACAAAACCTTCATCTGTACCCT
ACCTCAAAGATCTTACAAACAGCTCAAAACAACTGTTTTTAGGCTTAACC
GAAACCTGGTTAACGGACAATCACAAAAAAGGAGAACTTGAGATTgaaaa
ttacactttttttaagaaaaacataGACAGAGTAAAATCGAAATATGGCA
GAGCAAGCGGAGGCGTTGCATTTTATGTGCGTAATGACATTGCACCATTC
TTCGAGCCCATTTTTGAATTCTCGAACAGAGTAAATGAAGCATTGATgct
ttatcaaaaaaatttaatattcttCTCTGTGTTATCTACAGACAACCCAA
CAATCCAGACTACAAATCTGAAGCACCTGAATTACAAGAACTCCTTTCTG
CAATGATAGCAAAAATTGATAGTATTACTGATTGTACACCTGACACATAC
ATCCTTGGGGATTTTANN
Run BLAST on NCBI

protein sequence of TCONS_00055058-protein

>TCONS_00055058-protein ID=TCONS_00055058-protein|Name=TCONS_00055058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MFSFVNIQGLCPQTKPSSVPYLKDLTNSSKQLFLGLTETWLTDNHKKGEL
EIENYTFFKKNIDRVKSKYGRASGGVAFYVRNDIAPFFEPIFEFSNRVNE
ALMLYQKNLIFFSVLSTDNPTIQTTNLKHLNYKNSFLQ
Run BLAST on NCBI

transcript from alignment at scaffold_248:398622..399439

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055058 ID=TCONS_00055058|Name=TCONS_00055058|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at scaffold_248:398622..399439 (Clytia hemisphaerica)
NNTAAAATCCCCAAGGATGTATGTGTCAGGTGTACAATCAGTAATACTAT
CAATTTTTGCTATCATTGCAGAAAGGAGTTCTTGTAATTCAGGTGCTTCA
GATTTGTAGTCTGGATTGTTGGGTTGTCTGTAGATAACACAGAGaagaat
attaaatttttttgataaagcATCAATGCTTCATTTACTCTGTTCGAGAA
TTCAAAAATGGGCTCGAAGAATGGTGCAATGTCATTACGCACATAAAATG
CAACGCCTCCGCTTGCTCTGCCATATTTCGATTTTACTCTGTCtatgttt
ttcttaaaaaaagtgtaattttcAATCTCAAGTTCTCCTTTTTTGTGATT
GTCCGTTAACCAGGTTTCGGTTAAGCCTAAAAACAGTTGTTTTGAGCTGT
TTGTAAGATCTTTGAGGTAGGGTACAGATGAAGGTTTTGTTTGTGGGCAA
AGTCCTTGTATATTGACAAACGAAAACATATTCAGTGTAGGTTTAGAAGT
AGTTTTGGTAGTCGGGTCAGCATCAGTAAGGGCAGTCACTGTCCCAGTAG
ATTCCTTGGAAATGTTGGTTCCATTGTTGGGTGCTGGGGTGGTAGATGAT
GTAGGGGATGTTGACGATTGAATGTTTGTTGAGGATGATGTGACAAATCG
TGGTTCCTGAATTGTATTTGTTGGTTTTGGTTGCTGAAACAATTGTTCAC
AAGAGAGATTATTTCTGTGGGAAAGTTGTCCAGGATTGCGAGAAAATCCT
GAGGTTCATCATTacgattgttttgctttttctgaTATCGTTTGGTTCCC
TTAACATGCGTGAATTTG

Coding sequence (CDS) from alignment at scaffold_248:398622..399439

>TCONS_00055058 ID=TCONS_00055058|Name=TCONS_00055058|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_248:398622..399439 (Clytia hemisphaerica)
TCATTGCAGAAAGGAGTTCTTGTAATTCAGGTGCTTCAGATTTGTAGTCT
GGATTGTTGGGTTGTCTGTAGATAACACAGAGaagaatattaaatttttt
tgataaagcATCAATGCTTCATTTACTCTGTTCGAGAATTCAAAAATGGG
CTCGAAGAATGGTGCAATGTCATTACGCACATAAAATGCAACGCCTCCGC
TTGCTCTGCCATATTTCGATTTTACTCTGTCtatgtttttcttaaaaaaa
gtgtaattttcAATCTCAAGTTCTCCTTTTTTGTGATTGTCCGTTAACCA
GGTTTCGGTTAAGCCTAAAAACAGTTGTTTTGAGCTGTTTGTAAGATCTT
TGAGGTAGGGTACAGATGAAGGTTTTGTTTGTGGGCAAAGTCCTTGTATA
TTGACAAACGAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034685XLOC_034685Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055058-proteinTCONS_00055058-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055058-exon-scaffold_248-1491911889:398622..399439TCONS_00055058-exon-scaffold_248-1491911889:398622..399439Clytia hemisphaericaexon
TCONS_00055058-exon-scaffold_248-1510915933:398622..399439TCONS_00055058-exon-scaffold_248-1510915933:398622..399439Clytia hemisphaericaexon
TCONS_00055058-exon-scaffold_248-1575043694:398622..399439TCONS_00055058-exon-scaffold_248-1575043694:398622..399439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:398622..399439 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.90921	4.52202	5.28647	2.17459	5.85654	6.35336	8.12212	8.66144	5.40986	4.83197	5.26155	6.47449	4.44177	5.04288	2.47829	2.86579	4.34442	2.99288	2.94754	6.6895	5.48384	5.77308	2.3448	2.27568	5.95313	5.34431	9.64718	9.12039	7.04667	5.36172
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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