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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055064 ID=TCONS_00055064|Name=TCONS_00055064|organism=Clytia hemisphaerica|type=transcript|length=3586bpRun BLAST on NCBI protein sequence of TCONS_00055064-protein >TCONS_00055064-protein ID=TCONS_00055064-protein|Name=TCONS_00055064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp RNKNQNKQKNQTFKHQHRMASSHLHHSSATYPVVPGSQDSATHILNHSAPRun BLAST on NCBI transcript from alignment at scaffold_249:17467..45130+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055064 ID=TCONS_00055064|Name=TCONS_00055064|organism=Clytia hemisphaerica|type=transcript|length=27664bp|location=Sequence derived from alignment at scaffold_249:17467..45130+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_249:17467..45130+ >TCONS_00055064 ID=TCONS_00055064|Name=TCONS_00055064|organism=Clytia hemisphaerica|type=CDS|length=23796bp|location=Sequence derived from alignment at scaffold_249:17467..45130+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055064 vs. Swiss-Prot (Human)
Match: SUH (Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3) HSP 1 Score: 538.495 bits (1386), Expect = 1.589e-178 Identity = 282/456 (61.84%), Postives = 338/456 (74.12%), Query Frame = 3
Query: 561 PTQALSREQMQRYLRERDHETVVVLHARVAQKSYGNEKRFFCPPPSLYLKGKGWNKRRDRHVAESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLYPHALVYIGPSEHPLMQQLTFEEKVDQGFCSAKTLFISDSDKRKSFIICTRLMYPNGKSLGVFESRRIKVISKPSKKKQSYKNTELCISSGTTVALFNRLRSQTVSTRYLNIEDTDDNRSNFRASSQQWGAFTIHLLDDXXXXXXXFSVRDGFIHYGQTVKLVCVRTQLALPRLVIRKVDKQQVSIDADDPVSQLHKVAFYFKDSERMYLCLSQEKIIQFQATQCPKDPKKEMITDGASWTIISTDKAEYSFCEGAGXXXXXXXXXXXXRAMQLNGGGDVAMIELKGENFQAVMKVWFADVEADTYYRCSECIIAVVPDIRSFPEGREDPRTKLTVPVSLVRHDGVIYPTGLNFAYTPEP 1928
P + L+RE M+ YL+ER +TV++LHA+VAQKSYGNEKRFFCPPP +YL G GW K++++ + + + + P A + IG S+ MQQL E K +C+AKTL+ISDSDKRK F++ ++ Y N +GVF S+RIKVISKPSKKKQS KN +LCI+SGT VALFNRLRSQTVSTRYL++E NF ASSQQWGAF IHLLDD+E EGEEF+VRDG+IHYGQTVKLVC T +ALPRL+IRKVDKQ +DADDPVSQLHK AFY KD+ERMYLCLSQE+IIQFQAT CPK+P KEMI DGASWTIISTDKAEY+F EG GPV PVTPVP V ++QLNGGGDVAM+EL G+NF ++VWF DVEA+T YRC E ++ VVPDI +F EG R + VPV+LVR+DG+IY T L F YTPEP
Sbjct: 27 PPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQ-------------------------PCAFIGIGNSDQE-MQQLNLEGK---NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG-----GNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEP 448 The following BLAST results are available for this feature:
BLAST of TCONS_00055064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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