TCONS_00055065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055065
Unique NameTCONS_00055065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055065 ID=TCONS_00055065|Name=TCONS_00055065|organism=Clytia hemisphaerica|type=transcript|length=3358bp
GTGAAATTAACCAGAAATAAATAATATAGAAGAAAACAAACATTTGTTAC
TGATtcaagatgaaaatgaaatcaaGTAACCACTTGGGTCAACTCAGGGT
GTCTCTTTACGACATCCCAGCGCAATCGTACCCTCAAATCCACCCCAGCT
TACTGACACCGCCCGAAACGCACACCCCGTACTCCTACTGTACATATGGC
GGTAACGGCGGTGGCCCACTCGATGAAGAAACGTCACAAACGCACGGAGC
GCTCGCCGTTTCCAGTTATCCTAACATGGAAGAAGTGTCTGCTGCTAGGT
ACGAAAACCCTGTTGACGCACGCTACTCAAATCCAACGCAAGCGCTCTCA
CGGGAACAAATGCAACGTTACCTGCGTGAACGGGACCACGAAACGGTAGT
TGTATTACACGCTCGCGTCGCTCAAAAATCGTACGGAAACGAGAAACGAT
TCTTTTGTCCGCCACCAAGTTTATATTTGAAAGGTAAAGGCTGGAACAAA
CGAAGGGATCGCCATGTAGCGGAGAGCAAAACGAACGAAGCAACCAACAA
CCCAACGACCTCTTCATCATCATCGACCAACAACAATAGCAATAATAATA
ATGACGTCAATAATTGTTTATACCCACACGCGCTAGTGTACATCGGCCCT
TCCGAACATCCTCTAATGCAACAGTTAACCTTCGAAGAAAAGGTTGACCA
GGGATTCTGTTCTGCCAAGACGCTTTTCATTTCCGATTCCGACAAACGTA
AATCCTTCATCATTTGTACGCGACTTATGTACCCCAACGGAAAATCGCTC
GGTGTCTTTGAGTCGAGGAGGATAAAGGTAATCTCCAAGCCGTCAAAGAA
GAAACAGTCCTACAAAAACACGGAACTATGTATATCATCCGGCACGACGG
TGGCGTTATTCAACCGGTTACGTTCACAAACGGTCAGCACACGGTACCTC
AACATCGAAGATACAGATGACAATAGAAGCAATTTTCGCGCCTCATCACA
ACAATGGGGTGCATTCACTATTCATCTATTGGACGACGAAGAAGAAGAGG
GAGAAGAATTTTCAGTGCGCGACGGTTTCATTCATTACGGTCAAACTGTC
AAACTAGTCTGTGTCCGCACACAACTCGCTCTCCCTAGACTGgtcATACG
TAAAGTTGATAAACAACAAGTATCGATCGATGCAGATGATCCAGTTTCGC
AACTCCATAAAGTCGCTTTCTATTTCAAAGACTCAGAAAGAATGTACCTT
TGTTTATCTCAGGAGAAAATTATTCAATTTCAGGCAACGCAATGTCCAAA
AGACCCGAAGAAGGAAATGATTACAGACGGAGCTTCCTGGACCATCATCA
GTACTGATAAAGCGGAGTATTCATTTTGCGAGGGTGCTGGCCCTGTGTCC
GACCCTGTGACGCCGGTGCCCACAGTGAGGGCCATGCAGTTGAACGGAGG
TGGTGACGTTGCCATGATTGAGCTGAAGGGAGAGAATTTCCAAGCCGTCA
TGAAAGTCTGGTTTGCCGATGTTGAAGCAGACACTTACTATCGATGTTCC
GAATGTATTATCGCTGTAGTACCAGATATTCGTTCATTTCCGGAAGGTCG
CGAAGATCCGCGTACGAAACTGACGGTACCAGTCTCGTTGGTCCGACATG
ACGGCGTCATTTATCCGACGGGATTGAATTTTGCGTACACTCCGGAACCA
TTGGAGCTCATTGAGATGGCGATGCGGAGCCGTGAGATGTATCATCAACC
TCGATGAAGAAACGTCATGGTGAAGGTCTTATTCAAGAATGGTGTTTGGT
GGGCGTTGGCGGTGCTTGTATTCACGCCCTAAACTCACGCCCATGGTGTT
GACACGGGATTGCTGCATATGGTGCTTCACGTATTGTTTTGTGTTAAACA
GAATTGTTATTCAAAAGTTTTGCATGGGCCGTGCTGGTATCCACGCCTTA
ATTTGCGTTGATAAGGGTAGATGTGACATTCACATGTTTATTGATACGGT
GTGGGTGGATCACGATTCAGATCATTGTAACACAATCAAGCAAGCACTGA
AGGTGTACCGTAGAAGACTCGATACTTTGATATCATCTACATGCGACGGG
AGATTCTTCAACTCCGTAAGCTGCGCTCTCTGACTTGTGAGCTGTGATGT
CTTTTTTACGTTAGACAAGCACCCTATTTTCTGTGAGAGAGGAGCGATGT
TCTTCCAAGCTGTTCTACTCGTTCGCTCGTATTTTCTCGTCGGAAAGGAT
CACACATGGTGTGAAAAGCTTTTCTCTGTACACCCAGCCTGCAGTCAAAA
AACATTTGGAGGTGTTAGTCTTTTTCTTAATCATAATATTGTTGCTGatt
tttgttgttgaagagAAGAGCGAAGAGAGAAGAATGCTGGCTCGTTTTTC
TCCTTCCCAGCATCTCAAATTATaactgacgtcagcagaaaatgACAACA
CTCAAATGAACATTTTATCATTCAAGAAATTGTAGAAATCTATTCATTCT
CGTAATAACAAGGTGTATTTTCCTTAGCAACTAGGGTTATTTTCCTTGGC
AACCGTCGTTAAGGGATAATGGCAGGTTTCAAATTGAAACtaagttattt
tttttaattatcagtGTTTTTGTACTGATTTTTTTCCTTCCAGGTTTTTC
GTTCCTCTTTTATATAATGAAACACGACTTGAATTTTTCGAACATCGACG
CTTCTGGTGGTGTTAGGTAGATGAAATGTTTTCAACAGAAGCAAATAAAG
CCTTGTCACATAAAGTATAATGTACAaagtattcaaaaattttcctttcg
AACTTAGTCTTTTGGGGAAACACTcttagcccggggggggggtacttagg
caaaaataggtgctgggtatgtgcggacggtaagggtagggtttttcacc
tttcaaagtctctctaagggttacaaaaatcaggaaatttcaaagtagtc
tctctaagggtgggaaaaacacgatttttagaacaaaattttgattttga
gagaaaaaattacaaaaaagagtaagggtaggaaatttttgaaaatcaga
gaaaatttttcgaaaaagtctctctaagggtcactttttcactaaaattt
ggtctctctaagtaagggtcggttttcggaggtcccgtccgcacataccc
ctcatttaccaaccctagtaccccccccccgggactcttagtaacaaaaa
aacaaattatgaaATACGAAGAAAATGTAGAACcaaattattattgttat
tgattaTTATTTGTTGATTGTTTTTGTATAATAGAAAGATTTAATAATTA
TTCTAACAACAGACACACACTAGACtctactctctctctctctctctctc
tctctctc
Run BLAST on NCBI

transcript from alignment at scaffold_249:29995..45130+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055065 ID=TCONS_00055065|Name=TCONS_00055065|organism=Clytia hemisphaerica|type=transcript|length=15136bp|location=Sequence derived from alignment at scaffold_249:29995..45130+ (Clytia hemisphaerica)
GTGAAATTAACCAGAAATAAATAATATAGAAGAAAACAAACATTTGTTAC
TGATtcaagatgaaaatgaaatcaaGTAACCACTTGGGTCAACTCAGGGT
GTCTCTTTACGGTATGTTTTTCTTCATCAAGTTACCATTCTCTTGAACTT
TCCTTTTAATACATTATATTCATGACGGAATGTTTTCAatggaaagaccc
cggtttttgccagtagtggcaaattttatacaactttagtctagtttaaa
tttgccactactggctaaaaccggggtatttccgtagaaaacattacgtc
atgaatacaGTGTACATTACTGCCCCATAAAGATTTCTGCTTTTGGGGTG
CAAGAAGAAGCTTTTCCATCTCATGTTTTTAATAGAATTctacaaaattt
taagaatcttGCCTAATTTGTTATTTAAAGATTACATTTATGTGTGAGAC
TGAACCTTCACTTTTGATATTCAACCTTACGTCTAAAGAAACTTCCTGGA
AAAGACGCCCAGTCAGGTTACAATACAACTTAGACTCTATATTTATTGGC
CACTTTCAAATTCATGGCGTGGGTCCTGACGAAGGTTTAGATATTGTATG
AACATACAACAATATTGCGCGCACAGAGTTTTACGAGCCTAGCAACTCGA
AATCTGAGCATGAGTTTACCATCGTGATGACGTCAGATATTCTAGCTCGT
TAcactcactgacctttatataaccctggaccgAACAATATCTGCCATCT
TTGATTGGAGTTTTTTTAGAATTGgtacccaaggagaagccattgcaatg
ttaaaaattaacgtctaacgccgctacatcatcaaaagaatttgaggaaa
agtagacctagcgctctcgatgcatttacaccgctatcgagtagtgccaa
cattagggtaccaattttcaaaaaactccgatcaaagattttgcttggct
gggattgagaagctttgtccagggtatataaaggtcagtggttacaCTCA
CATGCTCAcagataaatttttttcaagccttataaaccttgAACCCATTC
CCCACGTGGATGTCCTATTTTTCGACAAGTTTTGTTTTAGAAGAAAGTAT
TTGAATCGAAGAATCAAATCAAAGCAAATCTCGTCATAGTTTATTTGATG
TTTACGACTTTCTCGAAATGCATAAAATAGTTGCAATCCTCGTTTTCAAT
TATTGTTGCCAAGTGGCTGCAAAGTCGTCATAGTTAATATAGTTAATGTT
TGCAAGTGTTTGCGGTTTTGTATCATAATTAAAAAAACGGCCTTTTAGGA
AAACATGTGTGCAAGTgtcatttgaaataattatttcatGAAAACGAGGC
ATTCGTTCCTTTCAAACCGTTTCAAAACACAATCCTTAGATTATTCTAAG
GTTACATTTATCTTTAGATTATTCCACCTTCTGCAAAATTCGATATCTTT
TTAATTGTTTAACCACCACCATCATAAGAGTGTCTGCTCCCCCGTTTATC
TAGTAATATCGTACAGTAAATCTTTCTCCAGTTCTGTCTGGAAAATTTAA
ATCGCTTGTCTGATGCTTTTACCACAACTGTCTGGTGGTTTTAGTGTACG
TTATTTTCCTGGGCTTTCTCCTTATTCATAAACCAAGCACTCCTGTGAAG
GCACTCCATTAATGGATTTTTCAGAGCTAGGTGAATGTGGTAAAACTATT
GGAGAGCTATACCGTAAGAGGAATGCCTCTTTCTCTGTCTGTAATATTCA
ACCTTAgcaattttgatgtttttaccaCAGCGTctgctttaaagattttc
tatAAAAAGAAGCACGTGTAACTCTCCAATAGTTTTACCACCTCGCCTAG
CTCCATTAATTGAGTGCTTTTACAGTCTATCAGTctaaatctcttaggaa
ttcatcgagggaattctattgtaatacactgcttttttagaaaaatcaaa
aactccgataaggtctattttgTTTAAACAAGTTAACTTATTTCTGAGTG
TCAGTTTGTTGTACCAATTTCTTGGTGGTGTTCCGTTGTTAGTTGAGTGA
GAGATATCCTGAAAGAATTGCTTTATGCGCATCCTCGATCAATATCAAAA
AAAGCTTTGGGTGATCTCAAATAGGAGCTTACAGTAGATataaatcgtcg
tttttttcgGTCAAAATGTTGTAtacattgaaaaatttgaattatagatG
ATCAAAGGACACAATAGGAGGCGTCCTTGCATAAAATCTAGGCTATTACT
AAAATGACCGTTACACATTCTtttgtttggtattttttgctgacatcaTC
AGTTTACTTGTCAATGCAATGATACCACTctcctttttttaaatgtagTC
GTAGCAACCAGATTctcttctctctctctctctctctctctctctctctc
tctctcgtaGCTTGCATTATAATGACCTTCTTCTTATCGCCTTTATTGTA
TGTCATAAGTTGCACGTCTGCTCGGCTGTTATTGTAAATGGTTTTTGAGG
AATACATGACGAGATAATGAAATCATGGATTTGTATTTAGGTTCGtcgtt
gtttttctcttttcagtGGAGATGTATTTCCGTGATTTTGAGTCCTTGCA
TGGTCTTTGAAGATCTCCATTCTAGCTCCAGGTCTATAAATCTAGACTGA
GAATTCTCATTTTATCAAGTTTGACAAAATTTTTAACGTAGTACTTGCAT
TATATAGTTGAGTTCTTTGATGCTATTGCACAGCGAGTAGCATTTAGTTT
TAGCTTGTTAGAGTGCTNTTTCCGTGATTTTGAGTCTTGCATGGTTCTTT
GAAGATCTCCATTCTAGCTCCAGATCTAGATCTAGCTCTTGATAATTCTC
ATTTTATCAAGTTTGACAACATTTTTAACGTAGTACTTGCGTTATATAGT
TGAGTTCTTTGATGCTATTGCACAGTAGCATTTAGTTTTAGCTTGTTTTA
GAGTGCTTATGTTGTTATCTTTTCAAAGAAAGCTTTTAAACTCTTGAAAC
TTCCAGATGTCATTGACTTTTAGGGAAGAAACCAACTAGATTGAGtacaa
attcatttttttcattttactttCTTACATCAGACATCCCAGCGCAATCG
TACCCTCAAATCCACCCCAGCTTACTGACACCGCCCGAAACGCACACCCC
GTACTCCTACTGTACATATGGCGGTAACGGCGGTGGCCCACTCGATGAAG
AAACGTCACAAACGCACGGAGCGCTCGCCGTTTCCAGTTATCCTAACATG
GAAGAAGTGTCTGCTGCTAGGTAAggaatttttgagtttttcttcGCATT
TCTCTATTATAGAGACCTCTAACAGGCCTATAACACAGATATcttaaaac
actagatagagctactctgtatttcccaagcaacggcagttgaagcaaaa
taatgcgccatctttgctgaaagtaggtcacagCTGGTACCGGCAATTTG
CTCAACCAAACGGAAAAACTTGGATGGTGCGGAGCGACCATGCGAGAGAA
TGGACTTTGATcgatcaaattgccggcaccAAATTATGGTCTTCTTATTA
AAGATTACGGATAATTTCGTTTAAACAGTTGGgtcgaaaaaaatatatct
aGTGTTTTGTATAAGTTATCTGTGGCCTATAAGAAAAAGATATAGAAACA
ACACAAACCACTGGGTTAGAAAGCGTTGAAAATTGttacttttttgttta
aaaaacactgTGGCTCCTAAAGGAGAGAttgtttttgattaaaaacactT
GTGTAATCGAATGGTAGGAGGTACGTTAAAAAAGATGTCCTTTAATGCTC
TCACTTTTCAGGTACGAAAACCCTGTTGACGCACGCTACTCAAATCCAAC
GCAAGCGCTCTCACGGGAACAAATGCAACGTTACCTGCGTGAACGGGACC
ACGAAACGGTAGTTGTATTACACGCTCGCGTCGCTCAAAAATCGTACGGA
AACGAGAAACGATTCTTTTGTCCGCCACCAAGTTTATATTTGAAAGGTGA
GACAAGGtccaatttgtttttctttattcttGCAAACAACAACAGTTGAC
TCCTTCAATTTGAAGATCAAGAGACCAAGAATTAGTTttcaattaaagaa
aaattcgaattatagaagttcgagttagagagaaagagagagttaataca
cctttcccgaattgttatttaggctttttgactttttttttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTTTCAGCATGCGCTTGTCTTTATAGGAGGAATAca
aatatatagttttcaatatggtttgaagaccttcgaaaaataccaaacaa
ttcgggaaaggtgtattgttaACAACTCGATAGTTGAATTTTGTTCAGGT
CCACTAGTTCTCCCTTCACTAGAGATGTTCAtgtagtttttgttttgttt
acagcCAAACAAAAGTTGTATTAGTAGGGGTATTACAGGCACACTGTATT
ATAAAATCAGGAAGATTTTACCATGGTTGAATTCATTCAGCTCGGAAAAT
GCTGTATTACTACGCGCTTTttaaaaaccaataaaattgataaccttata
ccttatcggccctttttgcgccggcccttattggcgttattcttgggctc
gtggcgtaataagagccggtgttaaaagggccggcgtaaaaagggccgat
aaggtagtgcgtttattcgaagtgatTATATACTCTTTTTTTTTCGACTT
AAGGTAAAGGCTGGAACAAACGAAGGGATCGCCATGTAGCGGAGAGCAAA
ACGAACGAAGCAACCAACAACCCAACGACCTCTTCATCATCATCGACCAA
CAACAATAGCAATAATAATAATGACGTCAATAATTGTTTATACCCACACG
CGCTAGTGTACATCGGCCCTTCCGAACATCCTCTAATGCAACAGTTAACC
TTCGAAGAAAAGGTATGTCGAGACTTTTATGTTAATTTTACcacctttaa
aggttttgtttttacataagtgttcccgtttcatatcagacacatatttc
atatcgggacagtgtcttcctattgttatattattctgatataagaaaaa
aattgtttttcttttcctctttctgaccaatcttgctccacatccgtgtc
aatccaatgtgaaaaagcttgtaaattaagatcgatgagtaagcaaacga
tatcacttttatttaaaaacaaaacctttaaaagggATAATCAGGTTGCT
TGCCTGTAGATTACTTTAACGGTTCTGAAGAAAACCTCCAAATCTTTTTT
GGTGTTTTATGTTCTTTTTCCTAATAggtagagtcgatattttacgtgga
tagcccagttatctaggacttttagacagtctttcgattatTTTGACGGG
GTCCATTGCAAGCCGGCTCGGTTATCTAGGAACTGTTTTATGTTCACCAA
TGTTTCTGCAATTTAGTACTGAGATACGTAACCGTTAAACTCTCCTTTGA
CCTAAAGCGTAattaatcatttattttttcagcCGGGGACTTGTGAAAAA
CTCAAAGCCAACCGTTCCATTAATTTGACAATCTTCTTGTCTGTGTCGCT
CTCTGATTTGCCTCGCTCATACAAACAAGAAGTTTGAAAGAGATCGTTTC
TTTTAATTCGATTAGTCTGTAAACTATTAAAAGGGGAAGGTTCAGGGTAA
TCAAGGGAACGTTTTTATTAATTGGGCCAAATTATATGAGCAATTCTCCC
TCAAATAGAGCGAAATTAGTTCAAGAAATCTTCACAAATCTTTTTCTGAT
AAGCGCTTATACTGTATATTTAaaggaatttgaaattttataaaacGTCC
AATGATAGCGGGAAGCTATTGCGATGCTCTCCGTTGGATGCCATCTTTAG
TTTAGTCCTAGCAACGAGGTATGAGGTCAGCAACGCATTTGAACATGCGA
CTGCTATTAATATACCACGAGTAAGGAAATGAGTTCTTTGCGCATACTTT
AAATTCTCCAACCATTAATTTCGTTTAATTACAAATGACTTTTCGATGTG
GGAGAAATTTCTCACGCTCTTCTATATTACTCTTTTATACCTCtgtcttt
ttttaataagaacagaATTTTCGCcggggaaaaatatttgtcAATTGCTG
GTACttgttggtaaacgcattaaggccggggaaaattttcgtcggggtaa
aatattcgtcacttggccaaaatttcgtcacttttccccgacgaagtttt
ccccgataaggtatgtaagaacataaggcttcgctggccagaatattaag
aacaagttgagaacattttaaggcttttacgGACTCTGAAACATCCGATT
GGCttggaaaattgtaaaaaaatggctcacaaaatggttaaaataagaac
actttattAACATTCTTAggtttaaaacccaaaaagctaagaacatctga
aggcttcgagAAATTTAGGATTTTCTTACAAAGAAAAGTCTGTTGCTTCT
ACCTCTCATACATATCTTTATCTTTATCAATTAGAAATTTCCGATTTTAA
TGCGGGCTTCTGATAGATGTCAGGAATTttcatgaaagaaaaacaagcac
TTACTTGTAGCGTGGGAAGATTGCAATTCTTTCATCTCATaataatttag
aatttttgtacTAGAGCTCTGATAAAAAAACCCTTGAGTTGATTCTCATT
GCATTCAAGATGTgttcacactttttttataatcgaacaaactatataag
aacatgatgcttcgatggccaaaatattaagaaccagttaagaacatctg
aaggcttcaatcAAAGATTCTgtatgttcttgtaaaaaacgtcTAAAGTT
AAGGGTCTCGCCCTCGTGAGAATATAATCAATCTGAGAAATACAATGTCA
GATATTCGAAGTATTTTATTCCTTTTCTTTGCCGGCATTTGTACCTAGGC
ACTTTTATAGAAATGCTATGCTCTGTTTACCTTCACAACGTCCTAGCAAC
AAATCCGctctttttaatttcattaaaagaaatgttttggacATTTCGCA
ATGCCGGTGAAGCTGGTTGGTAAAGCATTCTTGAAAGAGTTTCTTTGCAG
TAAAATTACCAGTTAAATGGTCATATGAACTAACCTTCATATAttcctgg
accaagttactcaatcccggccaaccaaaaatctttgataGGAGTTtgtt
gaaattggtaccctTCAATAGCGGTGAAGTTGCATCGAGAGAGCTAGATC
TACTGTTCCTCGAATAGTTTTGATGATGTAACGCCGTTAGAAGTTAGTTT
TTAACATTGCactggcttcttctcgggtaccaattccaaaaaaacttcaa
tcaaagatggtggatatagcttggtccagggatataaaggtcagtggtca
tATGTCGAGAATTTTCCCATTTTACAAATGTTTTTGCAATACAGTTAACT
CGAACTTAAagggaaatttaatttgttcgaattacaaagaATTTCGAAAT
TTAGAAAGCAAATTTTGCGGAGGTTTCTCCGCTACAGGAACTGATAAAAG
GTTTGAATTATAGGAGTATTCAGATAAgagaagttcgaattagtgagagt
cCAATGTACAACTGTACTAAGgtaccaaaaaataaatttatacaCGGAAT
TACAGGGTGTttgactaccttaagggaactattttttgcgggaactaatt
tttgctgttcgcagttcaagatttaatatttaatatttgcggaaacttaa
ttttgcggatttctcacttgaaagaaaattagagccgtactgtgaattat
tatcgacctttgtttttcgcattttaaaaattttggacctaaatccgcaa
aaaccagaaaatttagttcccgcaaaaattagttcccttaagggaACATA
ATTCATTTATTCATTGATTTTGATTATGACAACTTCATTCATATTATCAT
CTTCCGGTCCCATCCTAAAGTTAAATTCCttgtaaaatactttctataaa
tcgaattgttctgtaattcgaacaaattcgACTTTCTGTTCGacttcgaa
ttagcgagagttgaCTGTAATCAGGGGCCTTATTTGCTGTAGACCCGGCG
AACGGGGAATTTCGCCGGTTCAAGGCACGAAAAAAGCTACAATTCGCTGT
TCGAAAAGTTCGGTTCgccgcctcaagtacatatttacgctaatcaatac
actgcgCTTCCTAAGAATTCACCGACTTAGAGAATCTAGAAcatagttaa
tttttcattcgccagagttaatttttcattcgccagcctaccaaaacaaa
ggaaaaccCCCTGTGTAATGAATGTTAATTATCAGTCGTTAAAATCTTCC
ATTATGATAATTATTTCCTTATTCCCCTATTTTCCAGGTTGACCAGGGAT
TCTGTTCTGCCAAGACGCTTTTCATTTCCGATTCCGACAAACGTAAATCC
TTCATCATTTGTACGCGACTTATGTACCCCAACGGAAAATCGCTCGGTGT
CTTTGAGTCGAGGAGGATAAAGGTCAGTACTTATTattaatagcgaggtt
aagcacggaTTATTTTGGCCGTAAAGTGCGAcccgttttttttttaccac
aacTTTAGCATCCCAAATTTAAACATTTATCAGTTATCAGCTTAATCTGG
TAATTATTTTATTACATCTCTTTTTTAAATTAACGTGAGAACTGTTTTCA
ATCGGTTTATTCGTACCACACTACACTATGGCCTCACCTCGCCTCCCCTC
GCCTCGGCTGAGCTCATCGTGGGAATATCTGACAAATAATTTAATCCTTT
CCATGAGTGTTTTCTCAAATACTTCCATGATTAAATTAATAAGcattata
agaacatcacaTAGAATGAGAgcttaatatttttataagaacatgaaaaa
taatttgttccATTCTCAGGTAATCTCCAAGCCGTCAAAGAAGAAACAGT
CCTACAAAAACACGGAACGTAAGTAACCTTTAAATCACATGTTAGTATTA
TATATGTTTATccgcagacacgtgtttcgtTCATCCAGGGACTCATTAAA
TGCGGCTCTGGTAAGCGAGCATAATCTGCTGCTGTCACCACagtgctcaa
aacactaagTGTTGAGCTTTCCATAATCGCTTTTAATCGCTCATAATTTG
ATCTCGCATTTGAAAACTGCCTTGCCTGCTTTCCCAATCTTCCCACCCCG
AACTATGAAAATGAAACCCTGAATTGATTTAAATGACGCCCGAAATGATC
AGTCTAGTAACGCCCACCTCTGGCGCTCCTTTCAATCTCAAAGCAGTTAT
CAAACCTCattcaaacaacaaaaaattgtCAATGATTTTCCCAAACCGCG
ACTTCTCTCTGATGGGTGACAAAGACAGGAAACTCTTAAAAGCGAAAACC
ACTTATTTTTTGCATCCACTAAATAATAAAGACAACCGTTAGATGGATGG
CCCCTTGTAAAACTTTTCCCACGCTTCTATATATCCGTGAGTCAGCCGGC
GTTTGATTTATATCATGTTGcagttttttttgttattgttttgaaaaagt
caTTAACAATTACAGGTTATTTATAGCGATGTCTTTGTGTGTTTGTACAA
TCATTAGTGATTTTCCCACGATTCTAAATACTCGTGTATTTTTTCCTCTC
CTATCTCTTACTTACAACTTGAGGTCTTTTTAGCCGTCAATCATTTCTTT
TGATTCCGAATTTCcataaattttctttaaaaagaatccTCTTGAATTGC
CTTAAAAGTCATCAAAAGATATCGAATTGCTAAGGTTTTGTAAGGGAGCA
ACCGCTTATTTAGAAAACTAACTGTTATTTTTCGTCTCTTGAAAAATTGT
AATCTTTTCCCGACACAGTCACTTTACTGTCTAAATCTCTCTAAATTCCC
CTGGCCTTTTAACAGTTTGTACAACATCCAGCACATCGGTGGCATAATTC
AACCTGATCCTCTAATTTCTAAAGGCCGGTATCCACGTTCGCGCGAAATG
Ggaaacagtttttttcttaaccttttttgcctgaagaaaagattacgtca
taaaaaagtttcgcgcgaacgaaaagaaagttgaaggaagttctactttt
gttcacccgttacgtcaatttcgaccaatggaattgcttcatttttcaac
cgaccaatgaccttacagaAACATCAGAAAGTtctcgctcatgtcgcgcg
aaagtggagaccggccttaagctTACAATCTTAAAGAACACttcgccaaa
atttcgtcacttttccccgacgaagttttccccgataaggtatatcatCC
GACACGACAGTTGCGTTATTCAACCTGAGACTCTGATTTCTAATTCTAAA
ATCTCAAAGGGCACTTCATGCTCTTGTTTCAATGTTGAATTCATGATGCA
ATTTTTTCTACGGAAACTGTTCGGTTTTAGCAAGTcatggcaaatttaaa
ctagcgAAAAACTGTTTAAAATTTGCCACTGCTGTCAAAAACCAGGGTGT
GtcccgtagaaaacattacgtaatgaatatcGTAAATATCATTTCCCGCC
TCTTTTTTCAGTATGTATATCATCCGGCACGACGGTGGCGTTATTCAACC
GGTTACGTTCACAAACGGTCAGCACACGGTACCTCAACATCGAAGATACA
GATGACAATAGAAGCAATTTTCGCGCCTCATCACAACAATGGGGTGCATT
CACTATTCATCTATGTAAGTAGAGTAGAATCACTCTATCATCCGTCTAAT
TTGTCATGGGCCTACTTTTTTGAAGACCATGCtatgagggtgtaaaaagt
gaaaaattttcttcgtcgcgacattttttttcaaggGGCCCATGTTTGTA
TATGATATAAGTATACAGTACAATCGCTCTCCATTTTGAGTTTATGAGCC
TTCACATCACATCTTTGTAGGTTTACCGTAGTATCTCTCTTACATCTATG
TAAGGATACATCAGTTTTCTTAGTTATTCATTATGCCACCCACCAcaata
atttatgcaaattatGCCACTGCAAGAGTAATTTATGCAAATTTATTCGT
CTTTTCTGTCATATTTAGTGGACGACGAAGAAGAAGAGGGAGAAGAATTT
TCAGTGCGCGACGGTTTCATTCATTACGGTCAAACTGTCAAACTAGTCTG
TGTCCGCACACAACTCGCTCTCCCTAGACTGGTTAGTATTGTTCTTACTC
taaggttccaaataaacggccctcccgcttgttaatttttcgaaaatttt
ccaaccataATCATGATTTACAAccaagaccatgttcagacgttacggtt
ccgttccgttccgttccgaaacggttccgaaacaagtgtgaacgtcaaaa
aagaagacgttacaaagcaaagtAGATCGAAACgttttcgctccactttt
ttcatcggaacggaactgctctgttccgaaaccaatatgaacacactcga
tccgcaACGAAAATCATGCCGGaacgaaacggaacagtaacgtgtgaaca
tggtctaagagACTCCAGTGCAGTGCAGCGTAGTCTTTTTCTCACTGGTT
GTGAAATTATAATTAATCAgaattcaatattttcattttcaggtcATACG
TAAAGTTGATAAACAACAAGTATCGATCGATGCAGATGATCCAGTTTCGC
AACTCCATAAAGTCGCTTTCTATTTCAAAGACTCAGAAAGAATGTACCTT
TGTTTATCTCAGGAGAAAATTATTCAATTTCAGGTGAGTGACATGCAAGG
CCCTGCACGTTTTCTATTACGTTTGGAAGTTTTTTTCTACACGAAAAGTG
GACAAAGTTTTTGGAATTTATCCTTTGTAGCAGTCCCATTCCCAGAAATT
TAGTAACATAAGTCGATTAAATTTTGCGTGAATTATTTTTCGCGGTTTTC
TTGCATTTCTTCTATTTTTGCGAAAGTAAAAACTCGGGAAATCAAGTGAG
ATTGCTGACTCGCGAAATCAAATCAAACCGAGATTTTCGAAATGACTTTT
TTAGCCTGAAATACAGTGTAAATCTGCTATTCAAGACGTTCTCTACAAAA
TGTtggctgattttcgcgaaataaTATAAATCAAGGCAATTTCGCGATCT
TTTTGGCTCGTGAAATTGAAGCAAAAGTAAATTCCATTAACTCATTTCAA
ACTTGCAATCCGCTCTCTTCTTAACAGGCAACGCAATGTCCAAAAGACCC
GAAGAAGGAAATGATTACAGACGGAGCTTCCTGGACCATCATCAGTACTG
GTGAGTTTTGTATATCTATCTACCGGGTGTTATGCATCTCGTTGATACTG
TATTTACGGCTATCCAAAAGTTCGCTCaacaatcaaattcaaatgaaaac
atttcctctgaaaatgaaaattcccgAATAATCTCAAGAGACGAACCAAG
CTTTTTATCGTTGCTAACATTATATATTTTGGAATGTTGCTTTCAAAATC
TTTACTTTTTTGTCATAGATAAAGCGGAGTATTCATTTTGCGAGGGTGCT
GGCCCTGTGTCCGACCCTGTGACGCCGGTGCCCACAGTGAGGGCCATGCA
GTTGAACGGAGGTGGTGACGTTGCCATGATTGAGCTGAAGGGAGAGAATT
TCCAAGCCGTCATGAAAGTCTGGTTTGCCGATGTTGAAGCAGACACTTAC
TATCGGTGAGCTCTTCTACCTCTTTAAGTAATTCATGGTATGAACCAATC
TAACGACTTCACTCAGCAATAGACTTACAAATAACTTTGCTGGTTTTcta
cccaatacgtcacttgtaACCAATCAACTGTTCTAAAGGGGTTGTAATGT
CGGAAAAACCGGATTTACGAATAGCCTACTTTTAGAAGATCATTTAGGCC
CGTCATCTTAAGTCCATATAGATGACTCAATGTATacactagactagagt
ctacttgaCTAGACTAGAGTTCAGTGCAGTAGACTAGCACGccagtttga
aagaaaaacaaagatgaCAGTTCGATTGTCTTTCTGGTTTTATGATGGgc
tgtttttttatataattgtCAATTTATATTCTTTGCCACCATATAcctat
tttttgactttgtgaaGAGTTCGGATAAATTAAAGGCCAGTAAATAAATC
TGCATTTCAAAAATGGACTTTCAAACTTTACTTCAGTTGTTTAAAACATC
TTTCCGCTCTTCTTCTTTCAGATGTTCCGAATGTATTATCGCTGTAGTAC
CAGATATTCGTTCATTTCCGGAAGGTCGCGAAGATCCGCGTACGAAACTG
ACGGTACCAGTCTCGTTGGTCCGACATGACGGCGTCATTTATCCGACGGG
ATTGAATTTTGCGTACACTCCGGAACCATTGGAGCTCATTGAGATGGCGA
TGCGGAGCCGTGAGATGTATCATCAACCTCGATGAAGAAACGTCATGGTG
AAGGTCTTATTCAAGAATGGTGTTTGGTGGGCGTTGGCGGTGCTTGTATT
CACGCCCTAAACTCACGCCCATGGTGTTGACACGGGATTGCTGCATATGG
TGCTTCACGTATTGTTTTGTGTTAAACAGAATTGTTATTCAAAAGTTTTG
CATGGGCCGTGCTGGTATCCACGCCTTAATTTGCGTTGATAAGGGTAGAT
GTGACATTCACATGTTTATTGATACGGTGTGGGTGGATCACGATTCAGAT
CATTGTAACACAATCAAGCAAGCACTGAAGGTGTACCGTAGAAGACTCGA
TACTTTGATATCATCTACATGCGACGGGAGATTCTTCAACTCCGTAAGCT
GCGCTCTCTGACTTGTGAGCTGTGATGTCTTTTTTACGTTAGACAAGCAC
CCTATTTTCTGTGAGAGAGGAGCGATGTTCTTCCAAGCTGTTCTACTCGT
TCGCTCGTATTTTCTCGTCGGAAAGGATCACACATGGTGTGAAAAGCTTT
TCTCTGTACACCCAGCCTGCAGTCAAAAAACATTTGGAGGTGTTAGTCTT
TTTCTTAATCATAATATTGTTGCTGatttttgttgttgaagagAAGAGCG
AAGAGAGAAGAATGCTGGCTCGTTTTTCTCCTTCCCAGCATCTCAAATTA
TaactgacgtcagcagaaaatgACAACACTCAAATGAACATTTTATCATT
CAAGAAATTGTAGAAATCTATTCATTCTCGTAATAACAAGGTGTATTTTC
CTTAGCAACTAGGGTTATTTTCCTTGGCAACCGTCGTTAAGGGATAATGG
CAGGTTTCAAATTGAAACtaagttattttttttaattatcagtGTTTTTG
TACTGATTTTTTTCCTTCCAGGTTTTTCGTTCCTCTTTTATATAATGAAA
CACGACTTGAATTTTTCGAACATCGACGCTTCTGGTGGTGTTAGGTAGAT
GAAATGTTTTCAACAGAAGCAAATAAAGCCTTGTCACATAAAGTATAATG
TACAaagtattcaaaaattttcctttcgAACTTAGTCTTTTGGGGAAACA
CTcttagcccggggggggggtacttaggcaaaaataggtgctgggtatgt
gcggacggtaagggtagggtttttcacctttcaaagtctctctaagggtt
acaaaaatcaggaaatttcaaagtagtctctctaagggtgggaaaaacac
gatttttagaacaaaattttgattttgagagaaaaaattacaaaaaagag
taagggtaggaaatttttgaaaatcagagaaaatttttcgaaaaagtctc
tctaagggtcactttttcactaaaatttggtctctctaagtaagggtcgg
ttttcggaggtcccgtccgcacatacccctcatttaccaaccctagtacc
ccccccccgggactcttagtaacaaaaaaacaaattatgaaATACGAAGA
AAATGTAGAACcaaattattattgttattgattaTTATTTGTTGATTGTT
TTTGTATAATAGAAAGATTTAATAATTATTCTAACAACAGACACACACTA
GACtctactctctctctctctctctctctctctctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034691XLOC_034691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055065-exon-scaffold_249-1491911889:29995..30105TCONS_00055065-exon-scaffold_249-1491911889:29995..30105Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:29995..30105TCONS_00055065-exon-scaffold_249-1510915933:29995..30105Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:29995..30105TCONS_00055065-exon-scaffold_249-1575043694:29995..30105Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:33078..33264TCONS_00055065-exon-scaffold_249-1491911889:33078..33264Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:33078..33264TCONS_00055065-exon-scaffold_249-1510915933:33078..33264Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:33078..33264TCONS_00055065-exon-scaffold_249-1575043694:33078..33264Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:33806..33990TCONS_00055065-exon-scaffold_249-1491911889:33806..33990Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:33806..33990TCONS_00055065-exon-scaffold_249-1510915933:33806..33990Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:33806..33990TCONS_00055065-exon-scaffold_249-1575043694:33806..33990Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:34898..35106TCONS_00055065-exon-scaffold_249-1491911889:34898..35106Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:34898..35106TCONS_00055065-exon-scaffold_249-1510915933:34898..35106Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:34898..35106TCONS_00055065-exon-scaffold_249-1575043694:34898..35106Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:38532..38666TCONS_00055065-exon-scaffold_249-1491911889:38532..38666Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:38532..38666TCONS_00055065-exon-scaffold_249-1510915933:38532..38666Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:38532..38666TCONS_00055065-exon-scaffold_249-1575043694:38532..38666Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:39064..39112TCONS_00055065-exon-scaffold_249-1491911889:39064..39112Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:39064..39112TCONS_00055065-exon-scaffold_249-1510915933:39064..39112Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:39064..39112TCONS_00055065-exon-scaffold_249-1575043694:39064..39112Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:40706..40858TCONS_00055065-exon-scaffold_249-1491911889:40706..40858Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:40706..40858TCONS_00055065-exon-scaffold_249-1510915933:40706..40858Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:40706..40858TCONS_00055065-exon-scaffold_249-1575043694:40706..40858Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:41213..41325TCONS_00055065-exon-scaffold_249-1491911889:41213..41325Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:41213..41325TCONS_00055065-exon-scaffold_249-1510915933:41213..41325Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:41213..41325TCONS_00055065-exon-scaffold_249-1575043694:41213..41325Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:41737..41877TCONS_00055065-exon-scaffold_249-1491911889:41737..41877Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:41737..41877TCONS_00055065-exon-scaffold_249-1510915933:41737..41877Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:41737..41877TCONS_00055065-exon-scaffold_249-1575043694:41737..41877Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:42322..42394TCONS_00055065-exon-scaffold_249-1491911889:42322..42394Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:42322..42394TCONS_00055065-exon-scaffold_249-1510915933:42322..42394Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:42322..42394TCONS_00055065-exon-scaffold_249-1575043694:42322..42394Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:42613..42799TCONS_00055065-exon-scaffold_249-1491911889:42613..42799Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:42613..42799TCONS_00055065-exon-scaffold_249-1510915933:42613..42799Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:42613..42799TCONS_00055065-exon-scaffold_249-1575043694:42613..42799Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1491911889:43316..45130TCONS_00055065-exon-scaffold_249-1491911889:43316..45130Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1510915933:43316..45130TCONS_00055065-exon-scaffold_249-1510915933:43316..45130Clytia hemisphaericaexon
TCONS_00055065-exon-scaffold_249-1575043694:43316..45130TCONS_00055065-exon-scaffold_249-1575043694:43316..45130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_249supercontigscaffold_249:29995..45130 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48552	3.15581	1.53143	0.712132	0.0503075	0	2.67979	2.95362	3.53444	3.9577	1.24542	2.12589	5.34552	6.02945	2.72356	13.1072	5.6612	9.12902	4.3435	5.01211	6.40485	3.13962	8.08824	5.49617	6.03466	3.92229	4.06892	1.18187	2.41535	3.34189
Blast
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BLAST of TCONS_00055065 vs. Swiss-Prot (Human)
Match: SUH (Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3)

HSP 1 Score: 535.798 bits (1379), Expect = 3.129e-178
Identity = 282/456 (61.84%), Postives = 338/456 (74.12%), Query Frame = 3 
Query:  333 PTQALSREQMQRYLRERDHETVVVLHARVAQKSYGNEKRFFCPPPSLYLKGKGWNKRRDRHVAESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLYPHALVYIGPSEHPLMQQLTFEEKVDQGFCSAKTLFISDSDKRKSFIICTRLMYPNGKSLGVFESRRIKVISKPSKKKQSYKNTELCISSGTTVALFNRLRSQTVSTRYLNIEDTDDNRSNFRASSQQWGAFTIHLLDDXXXXXXXFSVRDGFIHYGQTVKLVCVRTQLALPRLVIRKVDKQQVSIDADDPVSQLHKVAFYFKDSERMYLCLSQEKIIQFQATQCPKDPKKEMITDGASWTIISTDKAEYSFCEGAGXXXXXXXXXXXXRAMQLNGGGDVAMIELKGENFQAVMKVWFADVEADTYYRCSECIIAVVPDIRSFPEGREDPRTKLTVPVSLVRHDGVIYPTGLNFAYTPEP 1700
            P + L+RE M+ YL+ER  +TV++LHA+VAQKSYGNEKRFFCPPP +YL G GW K++++   +  + + +                          P A + IG S+   MQQL  E K    +C+AKTL+ISDSDKRK F++  ++ Y N   +GVF S+RIKVISKPSKKKQS KN +LCI+SGT VALFNRLRSQTVSTRYL++E       NF ASSQQWGAF IHLLDD+E EGEEF+VRDG+IHYGQTVKLVC  T +ALPRL+IRKVDKQ   +DADDPVSQLHK AFY KD+ERMYLCLSQE+IIQFQAT CPK+P KEMI DGASWTIISTDKAEY+F EG GPV  PVTPVP V ++QLNGGGDVAM+EL G+NF   ++VWF DVEA+T YRC E ++ VVPDI +F EG    R  + VPV+LVR+DG+IY T L F YTPEP
Sbjct:   27 PPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQ-------------------------PCAFIGIGNSDQE-MQQLNLEGK---NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG-----GNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEP 448
The following BLAST results are available for this feature:
BLAST of TCONS_00055065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUH3.129e-17861.84Recombining binding protein suppressor of hairless... [more]
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