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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055076 ID=TCONS_00055076|Name=TCONS_00055076|organism=Clytia hemisphaerica|type=transcript|length=860bp
ATATTGTTGTTGTTCAAGATCTGGGATCAAGATACCCAGCAGCAAAGCTC
GTAGCCTCAACTAAAGCTAATAAAGTTATCCCTGCACTAGCGGAGATCTA
TGATGAATATGGATatcctgaaaatcaaatatctgacaATGGTCCTCCTT
TCAGCAGCAGAAAAATGGAGGAGTTTACTAAAACCCATGGTGTTGCCACA
AGGTTTTCATCCCCTCATTTTCCTAGTCAAAACCCAGCCGAGACGCTCAA
AACATACCGACAGACCCCTCACCCAGCAACGGGTGTGCCACCTGCAAGCA
TGATTTTCAGGGACGGGCTGAAAGACAAATTTCCAAGAAAGGCCTTGACT
GAAAATGAGATCAAAAAAGCACGGGCACtagacaaagaaaagaaaattca
acatgAAGAGGTTATTAATGCCTCAAAATACCGAAAATCCTCTGATATCA
CGCAAGGGGACTTGGTATTAGTTCGAAATTATACAAGGAGATCTAAATTC
GATCCAATATTCTTACCTTCTCCTTATCAGATACAGGAAATAAATCCAGA
AATGAAAAGTGTTCTCATAAGAGATTTATTCTCAACGAAAACCCTACTAA
GGCACCTAGATGATGTCAAAAAATGCCAATACTTCATTGACACCACACCA
CAACAGGAAGGACGCAAAACCACTCAGAGCAATCAGGAATTAGAAGAAGC
AGCAAAGCAGTTAATAGAGGAGGAGCATCATGGGGAGACTACCTTTCCTG
AAGCACCCCCAGTGCAAACTCCCCCACTAGTTTTCCCTCAAACAGCCCCA
CAACCCCTTCCCCCAAATGATGAACCCACTCACCCGGAAGAAGGAACCAT
TCCGCAGAGG Run BLAST on NCBI protein sequence of TCONS_00055076-protein >TCONS_00055076-protein ID=TCONS_00055076-protein|Name=TCONS_00055076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
IVVVQDLGSRYPAAKLVASTKANKVIPALAEIYDEYGYPENQISDNGPPF
SSRKMEEFTKTHGVATRFSSPHFPSQNPAETLKTYRQTPHPATGVPPASM
IFRDGLKDKFPRKALTENEIKKARALDKEKKIQHEEVINASKYRKSSDIT
QGDLVLVRNYTRRSKFDPIFLPSPYQIQEINPEMKSVLIRDLFSTKTLLR
HLDDVKKCQYFIDTTPQQEGRKTTQSNQELEEAAKQLIEEEHHGETTFPE
APPVQTPPLVFPQTAPQPLPPNDEPTHPEEGTIPQR Run BLAST on NCBI transcript from alignment at scaffold_25:6649..7586+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055076 ID=TCONS_00055076|Name=TCONS_00055076|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_25:6649..7586+ (Clytia hemisphaerica)
ATATTGTTGTTGTTCAAGATCTGGGATCAAGATACCCAGCAGCAAAGCTC
GTAGCCTCAACTAAAGCTAATAAAGTTATCCCTGCACTAGCGGAGATCTA
TGATGAATATGGATatcctgaaaatcaaatatctgacaATGGTCCTCCTT
TCAGCAGCAGAAAAATGGAGGAGTTTACTAAAACCCATGGTGTTGCCACA
AGGTTTTCATCCCCTCATTTTCCTAGTCAAAACCCAGCCGAGACATTCAT
GAAAACAGTGGGAAAAGCAATGAAGATTAATCAGCACTTAAAAACGAATG
AAGCAGAAATCTTACAAGAAACGCTCAAAACATACCGACAGACCCCTCAC
CCAGCAACGGGTGTGCCACCTGCAAGCATGATTTTCAGGGACGGGCTGAA
AGACAAATTTCCAAGAAAGGCCTTGACTGAAAATGAGATCAAAAAAGCAC
GGGCACtagacaaagaaaagaaaattcaacatgAAGAGGTTATTAATGCC
TCAAAATACCGAAAATCCTCTGATATCACGCAAGGGGACTTGGTATTAGT
TCGAAATTATACAAGGAGATCTAAATTCGATCCAATATTCTTACCTTCTC
CTTATCAGATACAGGAAATAAATCCAGAAATGAAAAGTGTTCTCATAAGA
GATTTATTCTCAACGAAAACCCTACTAAGGCACCTAGATGATGTCAAAAA
ATGCCAATACTTCATTGACACCACACCACAACAGGAAGGACGCAAAACCA
CTCAGAGCAATCAGGAATTAGAAGAAGCAGCAAAGCAGTTAATAGAGGAG
GAGCATCATGGGGAGACTACCTTTCCTGAAGCACCCCCAGTGCAAACTCC
CCCACTAGTTTTCCCTCAAACAGCCCCACAACCCCTTCCCCCAAATGATG
AACCCACTCACCCGGAAGAAGGAACCATTCCGCAGAGG Coding sequence (CDS) from alignment at scaffold_25:6649..7586+ >TCONS_00055076 ID=TCONS_00055076|Name=TCONS_00055076|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_25:6649..7586+ (Clytia hemisphaerica)
ATTGTTGTTGTTCAAGATCTGGGATCAAGATACCCAGCAGCAAAGCTCGT
AGCCTCAACTAAAGCTAATAAAGTTATCCCTGCACTAGCGGAGATCTATG
ATGAATATGGATatcctgaaaatcaaatatctgacaATGGTCCTCCTTTC
AGCAGCAGAAAAATGGAGGAGTTTACTAAAACCCATGGTGTTGCCACAAG
GTTTTCATCCCCTCATTTTCCTAGTCAAAACCCAGCCGAGACGCTCAAAA
CATACCGACAGACCCCTCACCCAGCAACGGGTGTGCCACCTGCAAGCATG
ATTTTCAGGGACGGGCTGAAAGACAAATTTCCAAGAAAGGCCTTGACTGA
AAATGAGATCAAAAAAGCACGGGCACtagacaaagaaaagaaaattcaac
atgAAGAGGTTATTAATGCCTCAAAATACCGAAAATCCTCTGATATCACG
CAAGGGGACTTGGTATTAGTTCGAAATTATACAAGGAGATCTAAATTCGA
TCCAATATTCTTACCTTCTCCTTATCAGATACAGGAAATAAATCCAGAAA
TGAAAAGTGTTCTCATAAGAGATTTATTCTCAACGAAAACCCTACTAAGG
CACCTAGATGATGTCAAAAAATGCCAATACTTCATTGACACCACACCACA
ACAGGAAGGACGCAAAACCACTCAGAGCAATCAGGAATTAGAAGAAGCAG
CAAAGCAGTTAATAGAGGAGGAGCATCATGGGGAGACTACCTTTCCTGAA
GCACCCCCAGTGCAAACTCCCCCACTAGTTTTCCCTCAAACAGCCCCACA
ACCCCTTCCCCCAAATGATGAACCCACTCACCCGGAAGAAGGAACCATTC
CGCAGAGGATTGTTGTTGTTCAAGATCTGGGATCAAGATACCCAGCAGCA
AAGCTCGTAGCCTCAACTAAAGCTAATAAAGTTATCCCTGCACTAGCGGA
GATCTATGATGAATATGGATatcctgaaaatcaaatatctgacaATGGTC
CTCCTTTCAGCAGCAGAAAAATGGAGGAGTTTACTAAAACCCATGGTGTT
GCCACAAGGTTTTCATCCCCTCATTTTCCTAGTCAAAACCCAGCCGAGAC
GCTCAAAACATACCGACAGACCCCTCACCCAGCAACGGGTGTGCCACCTG
CAAGCATGATTTTCAGGGACGGGCTGAAAGACAAATTTCCAAGAAAGGCC
TTGACTGAAAATGAGATCAAAAAAGCACGGGCACtagacaaagaaaagaa
aattcaacatgAAGAGGTTATTAATGCCTCAAAATACCGAAAATCCTCTG
ATATCACGCAAGGGGACTTGGTATTAGTTCGAAATTATACAAGGAGATCT
AAATTCGATCCAATATTCTTACCTTCTCCTTATCAGATACAGGAAATAAA
TCCAGAAATGAAAAGTGTTCTCATAAGAGATTTATTCTCAACGAAAACCC
TACTAAGGCACCTAGATGATGTCAAAAAATGCCAATACTTCATTGACACC
ACACCACAACAGGAAGGACGCAAAACCACTCAGAGCAATCAGGAATTAGA
AGAAGCAGCAAAGCAGTTAATAGAGGAGGAGCATCATGGGGAGACTACCT
TTCCTGAAGCACCCCCAGTGCAAACTCCCCCACTAGTTTTCCCTCAAACA
GCCCCACAACCCCTTCCCCCAAATGATGAACCCACTCACCCGGAAGAAGG
AACCATTCCGCAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055076-exon-scaffold_25-1491911889:6649..6892 | TCONS_00055076-exon-scaffold_25-1491911889:6649..6892 | Clytia hemisphaerica | exon |
| TCONS_00055076-exon-scaffold_25-1510915933:6649..6892 | TCONS_00055076-exon-scaffold_25-1510915933:6649..6892 | Clytia hemisphaerica | exon |
| TCONS_00055076-exon-scaffold_25-1575043694:6649..6892 | TCONS_00055076-exon-scaffold_25-1575043694:6649..6892 | Clytia hemisphaerica | exon |
| TCONS_00055076-exon-scaffold_25-1491911889:6971..7586 | TCONS_00055076-exon-scaffold_25-1491911889:6971..7586 | Clytia hemisphaerica | exon |
| TCONS_00055076-exon-scaffold_25-1510915933:6971..7586 | TCONS_00055076-exon-scaffold_25-1510915933:6971..7586 | Clytia hemisphaerica | exon |
| TCONS_00055076-exon-scaffold_25-1575043694:6971..7586 | TCONS_00055076-exon-scaffold_25-1575043694:6971..7586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:6649..7586 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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