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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055077 ID=TCONS_00055077|Name=TCONS_00055077|organism=Clytia hemisphaerica|type=transcript|length=1171bp
CTAGAATATTGTAAACAAAGAGCAAAATGGACATTGCATTTCTAACTAGA
GAAGTATTCAACCAGTGTTGTCTTAACATTCAAAGGGCTGGTGAATCGAT
CGGCGATTTTTGGTTCTGGAATGAATTTAAGCATGATAAAGAGCAAAGAT
TCCTTCACAAAGTTTCCACAATCCCTTGGCAAATAACTCCAAACAAAGCT
GAAGAGAGATCACATGGCTTGGAAGATGAGCTTTTTGAAGACAATGAAAC
TCATGATTTAGAATGTGAAGTAGTTGTTCCTTTGGCAATTCAAAAAGAAC
AGAAGAATACATTTATCAAAATGGAGCATCACGTTGTTTATTCGGACAAC
TATTCAGTCCCAGTACTATATTTCAATGGAAGTTATCAAGATGGACGTCC
AATCACATTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCATG
CCATGCGTGATAAATGGTCCTTCATTACACAACAGGAACATCCGTATCTT
CAAAGACCGTTCTTTCAAGTCCACCCATGCCACACGGAAACTATGCTGAA
AACATTACTTCCAGAAAAGAGCAAATGCGAGAACACCTTACTAATGTGGT
TGTCAGCAATCGCGCCTATTGTCCACCTGGAATTATCAATGCACTACTTC
ACAAATAAACCAGCTCCACAGGAACCCTGCGATACCAATGGTTGAAGTCA
ATGAGGTATAACATAGTTTTTGCATTATAATTTTTANgtttttttgcttc
cggaatttttaaaaacctaaaatttgaagtgaaaaattgaaaaatgtgct
cacttagtacaccatatcctaccaaaatcgataATTTTGGGCTTgggcac
cacccatgttgcagttagtccactggtggagtaactgttttcccaaattt
tggtttatataccaccacggtagtaattgtcatagtgtttatataataac
tgcatgaccccccccctgttgagctTCACAATTATCAACTTTTTGACAAG
TTCAGGAGATTGGATTTATTCATATGAATGTCTGAACTCGTTTTAATCGA
TGTTCTCACAGACACATACTTTTGACGTCATTCATCCCTGGTATACTCGA
ACCTATTCCCTTTTATAGGTGTTTTGACTAAGTCGTTATTTTAAAGTTGC
TTGCTAAAATTGTTATATAGA Run BLAST on NCBI protein sequence of TCONS_00055077-protein >TCONS_00055077-protein ID=TCONS_00055077-protein|Name=TCONS_00055077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MDIAFLTREVFNQCCLNIQRAGESIGDFWFWNEFKHDKEQRFLHKVSTIP
WQITPNKAEERSHGLEDELFEDNETHDLECEVVVPLAIQKEQKNTFIKME
HHVVYSDNYSVPVLYFNGSYQDGRPITLQEVWNSIPEHYQHAMRDKWSFI
TQQEHPYLQRPFFQVHPCHTETMLKTLLPEKSKCENTLLMWLSAIAPIVH
LELSMHYFTNKPAPQEPCDTNG Run BLAST on NCBI transcript from alignment at scaffold_25:36336..47698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055077 ID=TCONS_00055077|Name=TCONS_00055077|organism=Clytia hemisphaerica|type=transcript|length=11363bp|location=Sequence derived from alignment at scaffold_25:36336..47698+ (Clytia hemisphaerica)
CTAGAATATTGTAAACAAAGAGCAAAATGGACATTGCATTTCTAACTAGA
GAAGTATTCAACCAGTGTTGTCTTAACATTCAAAGGGCTGGTGAATCGAT
CGGCGATTTTTGGTTCTGGAATGAATTTAAGGTAAGAAATTACAATCTAT
TAAAtttatcttcaaaatttttgctggaaaatatgaaaaaagttgtcCGA
CTATTTTTGTTTATAGGAAGGTGTCATGTTTAAGTTACTTTGCTTCAGTT
GATATCTTTTGAATTTCTGCCTCAATATCTTTACCTTACGATACACATTt
ctttacaagaacatccaaaatttcttaaaatgttcttattttcaacattt
tatgactatttttgtcaatttttctaaaaaatcgagTGCTTTGTAGTCCt
gctcaaagccttaaaatgttcttaacttgttcttgatatttaggctatca
aagccttatgttcttgtagagttttttctcataaaaaagattCTATCGTG
CTTCTTTTTGTAGCATGATAAAGAGCAAAGATTCCTTCACAAAGTTTCCA
CAATCCCTTGGCAAATAACTCCAAACAAAGCTGAAGAGAGATCACATGGC
TTGGAAGATGAGCTTTTTGAAGACAATGAAACTCATGATTTAGTAAGAGC
TCATAATTTAAAGTTTACCGAATTCAATACTGGGACGAGTCATTATAAAG
GGAAACCTTAAAGACATGGATGCcctccaactgtagtttaaacTCTTAAG
ATGTCTGTTAAAGTCTTTTTACTTtgcttttcatttttccaaccGATGCT
TCAAATCTAATAAACCAAAATATTATTTGCTCagtggtatataatatgtc
aagaataaaacttttgttgaaaAGTTGCAAGTAAAGCAAAGcttaaagcg
aatggactttagGAAGGATTGATAGATATATTTTAGTTCATCATTTGACT
CTCGCTGTCTATTTTCTTGTATCTATCCGAAAACGGTTTGTTTAGCTACA
attatggacaaaatatttgagacaaaggaaatttcccagcgaaattttaa
acaccacaaatgatttttaagcgccttaaactacagttggagttttaaca
tgagacttaagacttacgaccaaaggatctcaggatttaaaagctcaaat
ttgctcgaataaggcttggaGTTATAGCATATAGAAGCCatcaaacccct
ctaaaatcgaaatattcaatgaaagaaagtggaagtgctaaaatagcaat
tctcgcccgaaatttaattctgaaaaacgttaaaataatattattccgac
catgattgtagaactATATTAtttgtaagtaagtaagtaagtaagtttgc
gaccgcagttgaGGGCGACCCGTAGGCTCTCTTTTTGTATAGCTGTCtcc
ccgaaggtaggggagggcgccactcctttccctggatttctccacttatN
TCTTTTTGTATAGCTGTCtccccgaaggtaggggagggcgccactccttt
ccctggatttctccacttatacacttgatccgtctctttaattgctgagc
atcaagcagagaggcatcaagtaccattttgagaatctttggtatgaccc
agttggggatcgaacccacaacttTGTGCACCGTAGCTGggtgctctacc
ttcatgCTATATTATTTGCAATGGAATATAATTATAAGATTATTCTTCCC
TTCCATAGGAATGTGAAGTAGTTGTTCCTTTGGCAATTCAAAAAGAACAG
AAGAATACATTTATCAAAATGGAGCATCACGTTGTTTATTCGGACAACTA
TTCAGTCCCAGTACTATATTTCAATGGAAGTTATCAAGGTAcgcgtttgt
tttttttaaataagatcaaactatataaaaacttACGGCATTGATGGCCA
AAATAAATAGGCTTTGCTGACTCTAAAAGaaccaatttcttagaaaaata
gacaaaattactcacaaaatggtgaaaataagaacatgttaagaacattt
taaggcataACAATAATacattgtttgtttttctttttctaacttATTCT
TTGTCCGTTAATAATTCAATTTCAGCGAAATTTGCTAaaatagagatttt
ttttcgattttctgtaANCCCGTTAATAATTCaatttcagcaaaatttgc
taaaatagagattttttttcgattttctgtaAGAACCATTTTCGAAACTA
TGGTTTCCGTTGACTGACTAGCTGTAATATAAAACACATATATTTCAAAA
GCTAGTGTCATTATATCGCACTGTTTATCTACATAATTTTTACACAACAT
CTTATGGAAAGAATAATTACAACCCTGTACTATTGACCCGGTAAGGCGAA
AAAATTGTACCCGGTGGGAGAAATACCTTAAATTTCATCCCTGTTGCGAA
ACTGGCTGATTTTTTATCATTACTTGCAAATTACGTATCTTTGAGAATCC
CTACCCATTTCCATCTCCATTTCTTAAAGGCTGCGTTTTACATAAacgtt
cccgtttcatatcagatacatattttatatcaggcCGGTGTCTTCTATTG
TTATATcgtgctgatataaacaaaaaaatgctttcTCCTCTCTCTGACCA
ATCTTTCTCCACATTCGTGtaaattcaatgtgaaaaagcttgtgaattaa
aattgacgagtcaGCAAAAGATGTCGCTCTTTCTTATTTaagaacaaaac
ctttaattttatCACTACTTTCTAGAAAATTCTCACCGACCAGGATCACT
GAGTCAGGAAgtaaaattatttctttaatttttactCTTAGATGGACGTC
CAATCACATTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCAT
GCCATGCGTGATAAATGGTCCTTCATTACACAACAGgtaaattttataac
ttttatTTTACACCCGAGAGGGGGGGGgaacttaggcaaaaataggcgct
gggtatgtgcggacgataagggttgattttcttcacttttcaaaGTCTCT
GTAAGCGTCTgaaaattcacaattttttaggaaatcttttggtttcgaga
gaaaaaaaatgtaaaaaaatctctctaagggtaggatttttttctaaaag
aaatagaagaaaatctttcaaaaaagtctctaagggtcaccttttcggCA
AAAGTCAGTCTcgctaagggtcggttttcggaggtacCGTCCTCCTCAtc
tgccaaccctagtaccccccccgggttttcCATAATCCCTGATCTCAACT
TTGTCTGGATTGATTGAAAATCCCATTTAAATAAAATGCGTCTTCAATGA
ACTTTATATACATATTCCTGGACAAAGCTATATCAGCCATCTTTGATGGG
AGTTTTTTTAAAGTGGTGActgcaaagaagccattgcaatgttaaaaatt
aatgtcAAACGTCGATACATTATTCAGCATCATTACAAAGTATTccagga
aaagtagatctaacGTTCTAGATACATTTACACCTCCATTGAGTAgtgct
ttcaaaaaaactccgatcaaagattctGCTTGGTCAGGATTGAGAAACTT
TGTCCATGATATGTAAAGGTCAGTGTGCGTCTTGCTTTCACAACAACTAT
AGCCGTCATGTTGCTTTCATTTATCGGACAATGTTTCAGTGTTACTatct
attttaaaaatcttgtaacacactttttgaaaagataatcaaaaTTGAAT
CAATCGATACAATATTGCAAAATTTGATTCGAAAATTGTGTTCGATAACA
GAATTGAAACTAAATCAAATATTACAATAAAAGTTTGATAGATTCATTGG
ACGGAGGACATCaatcaaaagttcaagaattcaATCCTGATTTTTCGGTT
CGATTAGATTCGATTGCACTCGATTTGGTTATAGATTTGATTCGATTGTC
GGTTCAGTTTGATTTGACAACTCGTTAGGTGTAATAGCATTATGTTAtac
aaacgtcataattattacttttcaaatGTTGTCCGAGTTTTAATTCCATA
CTCCCTTTCGTCTTGATTCCAAATTCGGGAAGTCATTATTGTGCACAAGA
AATTAACGCAAGGAATGATGGGATTGAAACTCGGACAAATAGAGAAAATG
ATGTCTATTTTTCGATGCATCATTCAAGTGGTAACTGGAGGtagtttatc
ttttttcttcttttcgtcAGATGATATTTTCTTCTTGTTGTCGAGATTGA
CTGCTGATAATGTTTTTGATGGCAATAAAGGTGGTAGCTCGACTCTTTTG
TTAGCTGAAAGAAAATATACACATATCGTAACAAACAGCGTTAGAAATTT
TTACGTCGACTGATTTCCGTGTCAGTGAGAGGCTATTTGTCTAAAAATGC
TGAATgattcatcaaaatttcaagttattttgCTGTATGTTCACATCGTA
ACAGTGTTAAAAGTTCCAGATCAGAtggaatttttataaaatactttaat
aattggtcatttgaagtaataaaaatgacccgttctttagaaaaagtaac
aaaattgttttattattggtttacgaccaaccaaatcaaataagggcttg
taaaaactccatctcgccCCAAAAGTTCTTCTGACTTTTAGACGGATTTC
CGTGTTGGTGAAATATATATAATCTAATAATCTAAATATATATAAAGAGG
CTTTTCCGTTTCAAAATGCTGAAGATTCacctcaaaatttcaagaatatg
tgcttttttttgctgtttaaaATCCGTTTTCCGTCTCAAACCTAAAACTC
TGCTTTGACCACAGTTGGAAGAACCAGAAAGCTCtggctgaaaattttta
tatgaaataCTCTTAAGTTTTTGGATTTCTTCACCCGAGGGCTTTGAATG
TGTTTAACTCATCTCAATATAAAGTTTGGACTAACTTAAAAAATGAATTA
TTGGTGAAATATGGACCCATGTTAATGAGGTCGGATTTTCCATTCAGGAG
ATACCTTTTTAAGAAAgctgatttttcagaaattttggtaGTGGAactaa
aaattggccaaaataccaGTGAGTCCCTAATACAAATGAACGAAAAATAT
CCATCCAGGGTATCTAAATTTAAGACGAAGTTCCGGTGCAATTGTTGATC
TATTAAAAAACCTCCCTTTTCTCCCTTTCTTGTAAAATCTTACATACCTC
TTTTGATTCGCTCTTGATAATTTTGCTCGGACTTTTTCAACACTTCTAAC
CGATGAATATCTCTTTCATGCCATTTACCTTAAAGAATAATATTAAATCA
TAAATaaagagtcgatattttacgttaTACTTCCTACCTTATTTTACGAA
AATAAGTAAACTtataataaaccagccgaggctggaaggtcagccaatag
agcttaactagatagctttaataagtgggttaacagatgtaagagatgca
ctgaaacagagtagactaaatatgttgaataatgtacaaaatgtgaaaca
tttgaataacttgatttaaaattaagtaaaacaagcctgagagctcctcc
aaccccccccccccgagaagcccaaagtatacttctctttagcattgacc
atatagtacgtacgcaaagattttccaaaaattttccaaccccccccccc
cgagaagcccaaagtatacttctctttagcattgaccatatagtacgtac
gcaaagattttccaaaaattttccaaccccccccccacgagaagctcaaa
gtatacttctctttagcattgtccatatagtacgtacgcaaagattttcc
aaatatttgacaacccctccccccttgtacgcagagaacaatagaaatga
ctttgtttaaacaatagatgtacgctttgcctaaccccctctcccccctt
cactgtgtacgtactaatggatggcccctccagtctgggtaaataaattt
tgtataaagtatcagaaaattcaacataaacaaaaacttgagcaaacgac
tttaaaccttcaaagaatgtagaaaaagaatccccttgatgaaaatcatg
tgtttgatttgccgagttaaaaaaaaaaatgacagaaattgaaacttgca
acagatttacactggaaatactttggtacaacactgacttatcacatctg
actatcgcttgagccgccatcttgaaactacattacgatctgtaaaaaca
acgcacgctaaaagtacccaaaaagttaacccgatcggaagaaagtttag
aaatcaaagtgagatcggataatcagattttttttttgccgtcttatgga
acTGGAAGtggtggaagaaaattttacctatttgaatgctcagcttaggc
tgaccaattaacACGAACTAAAAATTTAGTCTTAAAACCCAATTAATCAA
AGCCATGGTCGGCTGTTGTtcttgaaaaaggaaaaaatcgtgttaatttt
ttgtgtaAACATTTAATTGCTCAAACCTAGGCCCGTTTCTCTTCAAATTG
AGACTTTAGACACAGACTAAACTTAAAGATTCTTACCTACTCTTACTTAA
TCCTTTTGTCTAAAATTGCTTGTTTCCGTACCCCTAGACTGTATTCCATT
ATCAACAAGCGCACTTTTAGAGTTTTCCTATTCTGACCCTTTTCGGGATT
CAGGCTAGACGTAAAAAGGTTCTTACCTAACCAATCCTTCTGTCTAAAGT
AATTTGTGTCCACACCACTAGACTGTAATACATGATAAACAAACGCACTT
TTAGAGTTTTCCTATTCTGACCCTTTTCGGGAGTCAGGCTAAACGTTAAA
TGGTTTTTACATAACCAATCCCTCTGTCCAAAGCATTATCACTAGACTAT
AATCCATGATCGATCAACAAACTCAAACGTACTTTTGGAGTTTGTTTATT
CTGGCCCTTTTCGCAGGATTCAGGTTAGACGTTAAATGGTACTTACCCAA
CCAATCTTTTTGTCTAAAATGATTTGTGTACACATCACTAGACAGTATTC
CATGGTCGACAAACGTACTTTTGGGGTTTGTTTATTCTGACCCTTTTCAG
GACTCAGGCTAGACGTTAAATGGTACTTACCCAACCAATCTTTTTGTCTA
AAATGATTTGTGTCCACATCACTAGACTGTATTCCATGGTCAACAAACGT
AATTTTTGAGCTTGTTCTCCAGGGATGATCGACGGATGGGAATAAATTGG
ATCGGAGGAATTGCGATAACTCGTTGTACATCACTGCTGTGTCTTCTGTT
TCTGTCATTATTTGTGTGTATATACacggtttttataagaacaaactata
taagaacaaggaCTGGGTGGCTTAAAtatttaagaacaagttaagaacat
tttaaggctttgcgggcCCTGAAACCCccgatttctttgaaaaatggaca
aaatactcaaaaaatggcatgttactgtaagaacattttttggcttaaaa
cacAAGACGTTAAGAACATCTAAGAACATCTCAAGGCTTTAAAAAGTTTG
gatgcttttataaaaaaaggctTGTAGTTTAGTACGTGTTTACAAAATTC
TATTTGCAATTCTCTCGCAGAGCaatttacaaaaattgaaattataaaat
gcGATGTATTTTTAAGACCAgtaaaacgaagaaaaaacacTCCAGCCTCG
TCTATAAGTTAGGCCATGGTAGACTTTATGAAGACCCGGGTTTCCATTTA
TATTAGCATAAGTTTTCCAACATTATAGATAAAACCCGGGGTAGGAAAAG
TTGTTTTTAGCAGTTGAATTCGGCTGCTAAACTAATATATGAAAATAAAC
AATTATAGATTATAATTTCGCTTACTCGAACCAACCCGGCGGGGGTTTTC
AactctttcaaaaaagttttatgaaTTAAGTTTATGAAGAGACTTTATAC
AAAATCATaccaatccaaaaaaaaaaaattaagttccaTGCTATaggatt
ttgttttttacaagttttttttttagttctttgGTACGATAAACGACTTG
TTGATTTTATTCACTATAGCAACccttattgaaataaaatatatcACCAA
ATTGAAAAATGATAACGTCCTAGTCTTTGTAAACAGATACTTTCTTACTT
GCacgtttcttcttttataagaatctaCTCAATGTTCACGATGCAATCCA
TGATATTCACCATTGAAATGTCTTCGACATCACAccatagctgattggtt
gtaagtgacgtaaaatcagacATTGCGTCAccttcaaccaatcagctgtt
gacTCCGTGATGTATTGTTAGAAGACATTACAAGGTGGCATATTCACgat
gaaattggtcaaaaaacaaagattttactAAAGAATAGAACCATCATAGA
ATTCAGTAACTAAACCTATGTTTaaaggatttttatttttaaattcccAA
TTATCCACAGCAATAATCATTAAATCAAATTTGCTTAATGTCTGTATTAA
GTCTTAAGTATTCATTTTAGATAGAATTTTGATCCTCGCCTAAGAATACC
TTATAAGagtatttttggatgattttctccTAAAAGAATATCCTAGATTA
AATGGagaaacaccattcttataaaaagcttGTACTCTAACCTTTCAAAT
CTTTATTCAGTCGTGTACtgtacattttattttcaaataacaaAGTTTAA
AGAGTTCGAACTcatcaaatttcagaaattgtgtacagttttaacaattt
ttttgacCCTGAGGCAAATGGAAAAACGAAAGGTTTCCAATAACATGCCA
AAGTATTGGCTTTCTTACGACGCTTAAGCCAGCCCTGTCTCATTGGCACA
TTCGGtcgatagatagatagatatcaGCCCTCCGAAGGATTAGGAATCAC
GGCGATGACAGACACAACGGCTTGACAGATGTGAGCTGACAAGCACTGGC
GTATatcatgacactcgaacgacactgggagagcgatgttcacgcgaggc
cgaaccttatgagtgcTTCGGGacgtcacaatgtctgtctCATCTACCCA
TATTCTTGTATtagagtaatggtacccaattccctcacatggcatgggtt
gacccgggcgaaggcaTATTCACTAGCCAAATGAATCGTAgagacacggt
gggtatcgaaatCGGGCCTCCCAGACTGGAGTCAAGGAtaataaccacta
taccactacgccgaacttttcggatttttttcaaaattttcgctCGTGTG
GCGAAGGAAGAGGAGAAAGTCGTACTTTCTTTTATCTGGCATCTTTTCTT
TCATCTCTATCTTCATGTACTGAGCAAGCGAAAATTTTATGAACTCGCta
ccaattcatgatatgcaccattgcaatgtcttccacggacccaacagctg
attggttgaaagtgacgtattgactgattttacgtcaatcacaaccaatc
agctattgggtcggAATAAATAAAACCTTAAAGCTAGAACCTCGAATCTT
TTCAGaaattctttttcctttttcattttcttgcttAGGAACATCCGTAT
CTTCAAAGACCGTTCTTTCAAGTCCACCCATGCCACACGGAAACTATGCT
GAAAACATTACTTCCAGAAAAGAGGTAAGTCTTGCGGCCCCCGCTTGAAA
TCGACCGTAGAGGATGGCACCCTGCCATTAAGCCGCTGGCacccactaac
ggattcgtgctcatATTATATGCTaactgcggttttgtagagatCTGCGA
TTAAAAGTACATTGACATTGCTACGAGTCACGATGGTCTTTCCTTTTAAT
GAGGTCTCCCAGTCACATTTCAAATCACGCCATCATgcaaagaaaatttc
caaatcacgttatcgcgaattaaatttcctttctatcacgatcacgttaA
TCACgtactttaaaatcttaaatcacgaaatcacgaacTTGAAAAAACGC
TAATCACATGGGGAACCTCTTTAATTACTAAATAAAATATAGAGTGGCAT
TCTAAGTCTTTCTGGTTGTTGGCAAAAGCCTGCTAagattgagtttaaag
ccccgcggggctagagaagaatcttaaacctttctcaagcaagaaaaagc
cttaagatttgAATGACGAATGACGGATTAAACCTAgccctttctttttt
ttttcaagcgacGTATATTTTTCTAGTAATGGGTTTTACTTTTAATCTgg
tgtttgtgtgaaaaccacgcctCACgagttctggatgggaaataagtggc
ttcaaatccttTTCTATCCAAGAGTTTCAAATCTAGCCTCCTCGGGACTT
TGAACACAGTATGCCATAGACCTTGAATAAACATCTAACCCTTAGCGCCG
TAGCCCTGAGCACaacattcaaaatattcttctttTATCTTGCAATAAAA
CTTTCCAAGTCTGAttcaataagaaaaaaaattcagagaCTTTTAATCAT
TCCAAGTAAAACTAGTTACATTTcccaatttcttctttttttaaatgata
aaaatgagaaagtaGAGGAGGGCTTCCTGCTGAGACCGGTCTGATTCGAT
ttcctttattattttttcctttCTCAACATTTTTGACTTGGAAAGTAAAT
CGTTCTTGATTCCGTTGGATTCTTCATGCTCtcgttcgttcattcgttca
ttcattcattcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgNGTTCGACACTAATCACTTGCTGATTTGTTGCAAAT
GACGCATTGACTggttttacgtcacttgcaaccaatcagctgttgtgtCC
GTGATGTCATGTTTTTAGAAGTCAATGCAattgtgcatatcatgaatatt
cctTTCTTTCCAGCAAATGCGAGAACACCTTACTAATGTGGTTGTCAGCA
ATCGCGCCTATTGTCCACCTGGAATTATCAATGCACTACTTCACAAATAA
ACCAGCTCCACAGGAACCCTGCGATACCAATGGTTGAAGTCAATGAGGTA
TAACATAGTTTTTGCATTATAATTTTTANgtttttttgcttccggaattt
ttaaaaacctaaaatttgaagtgaaaaattgaaaaatgtgctcacttagt
acaccatatcctaccaaaatcgataATTTTGGGCTTgggcaccacccatg
ttgcagttagtccactggtggagtaactgttttcccaaattttggtttat
ataccaccacggtagtaattgtcatagtgtttatataataactgcatgac
cccccccctgttgagctTCACAATTATCAACTTTTTGACAAGTTCAGGAG
ATTGGATTTATTCATATGAATGTCTGAACTCGTTTTAATCGATGTTCTCA
CAGACACATACTTTTGACGTCATTCATCCCTGGTATACTCGAACCTATTC
CCTTTTATAGGTGTTTTGACTAAGTCGTTATTTTAAAGTTGCTTGCTAAA
ATTGTTATATAGA Coding sequence (CDS) from alignment at scaffold_25:36336..47698+ >TCONS_00055077 ID=TCONS_00055077|Name=TCONS_00055077|organism=Clytia hemisphaerica|type=CDS|length=4014bp|location=Sequence derived from alignment at scaffold_25:36336..47698+ (Clytia hemisphaerica)
ATGGACATTGCATTTCTAACTAGAGAAGTATTCAACCAGTGTTGTCTTAA
CATTCAAAGGGCTGGTGAATCGATCGGCGATTTTTGGTTCTGGAATGAAT
TTAAGCATGATAAAGAGCAAAGATTCCTTCACAAAGTTTCCACAATCCCT
TGGCAAATAACTCCAAACAAAGCTGAAGAGAGATCACATGGCTTGGAAGA
TGAGCTTTTTGAAGACAATGAAACTCATGATTTAGAATGTGAAGTAGTTG
TTCCTTTGGCAATTCAAAAAGAACAGAAGAATACATTTATCAAAATGGAG
CATCACGTTGTTTATTCGGACAACTATTCAGTCCCAGTACTATATTTCAA
TGGAAGTTATCAAGATGGACGTCCAATCACATTGCAAGAAGTTTGGAACT
CAATACCTGAACACTACCAGCATGCCATGCGTGATAAATGGTCCTTCATT
ACACAACAGGAACATCCGTATCTTCAAAGACCGTTCTTTCAAGTCCACCC
ATGCCACACGGAAACTATGCTGAAAACATTACTTCCAGAAAAGAGCAAAT
GCGAGAACACCTTACTAATGTGGTTGTCAGCAATCGCGCCTATTGTCCAC
CTGGAATTATCAATGCACTACTTCACAAATAAACCAGCTCCACAGGAACC
CTGCGATACCAATGGTTGAATGGACATTGCATTTCTAACTAGAGAAGTAT
TCAACCAGTGTTGTCTTAACATTCAAAGGGCTGGTGAATCGATCGGCGAT
TTTTGGTTCTGGAATGAATTTAAGCATGATAAAGAGCAAAGATTCCTTCA
CAAAGTTTCCACAATCCCTTGGCAAATAACTCCAAACAAAGCTGAAGAGA
GATCACATGGCTTGGAAGATGAGCTTTTTGAAGACAATGAAACTCATGAT
TTAGAATGTGAAGTAGTTGTTCCTTTGGCAATTCAAAAAGAACAGAAGAA
TACATTTATCAAAATGGAGCATCACGTTGTTTATTCGGACAACTATTCAG
TCCCAGTACTATATTTCAATGGAAGTTATCAAGATGGACGTCCAATCACA
TTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCATGCCATGCG
TGATAAATGGTCCTTCATTACACAACAGGAACATCCGTATCTTCAAAGAC
CGTTCTTTCAAGTCCACCCATGCCACACGGAAACTATGCTGAAAACATTA
CTTCCAGAAAAGAGCAAATGCGAGAACACCTTACTAATGTGGTTGTCAGC
AATCGCGCCTATTGTCCACCTGGAATTATCAATGCACTACTTCACAAATA
AACCAGCTCCACAGGAACCCTGCGATACCAATGGTTGAATGGACATTGCA
TTTCTAACTAGAGAAGTATTCAACCAGTGTTGTCTTAACATTCAAAGGGC
TGGTGAATCGATCGGCGATTTTTGGTTCTGGAATGAATTTAAGCATGATA
AAGAGCAAAGATTCCTTCACAAAGTTTCCACAATCCCTTGGCAAATAACT
CCAAACAAAGCTGAAGAGAGATCACATGGCTTGGAAGATGAGCTTTTTGA
AGACAATGAAACTCATGATTTAGAATGTGAAGTAGTTGTTCCTTTGGCAA
TTCAAAAAGAACAGAAGAATACATTTATCAAAATGGAGCATCACGTTGTT
TATTCGGACAACTATTCAGTCCCAGTACTATATTTCAATGGAAGTTATCA
AGATGGACGTCCAATCACATTGCAAGAAGTTTGGAACTCAATACCTGAAC
ACTACCAGCATGCCATGCGTGATAAATGGTCCTTCATTACACAACAGGAA
CATCCGTATCTTCAAAGACCGTTCTTTCAAGTCCACCCATGCCACACGGA
AACTATGCTGAAAACATTACTTCCAGAAAAGAGCAAATGCGAGAACACCT
TACTAATGTGGTTGTCAGCAATCGCGCCTATTGTCCACCTGGAATTATCA
ATGCACTACTTCACAAATAAACCAGCTCCACAGGAACCCTGCGATACCAA
TGGTTGAATGGACATTGCATTTCTAACTAGAGAAGTATTCAACCAGTGTT
GTCTTAACATTCAAAGGGCTGGTGAATCGATCGGCGATTTTTGGTTCTGG
AATGAATTTAAGCATGATAAAGAGCAAAGATTCCTTCACAAAGTTTCCAC
AATCCCTTGGCAAATAACTCCAAACAAAGCTGAAGAGAGATCACATGGCT
TGGAAGATGAGCTTTTTGAAGACAATGAAACTCATGATTTAGAATGTGAA
GTAGTTGTTCCTTTGGCAATTCAAAAAGAACAGAAGAATACATTTATCAA
AATGGAGCATCACGTTGTTTATTCGGACAACTATTCAGTCCCAGTACTAT
ATTTCAATGGAAGTTATCAAGATGGACGTCCAATCACATTGCAAGAAGTT
TGGAACTCAATACCTGAACACTACCAGCATGCCATGCGTGATAAATGGTC
CTTCATTACACAACAGGAACATCCGTATCTTCAAAGACCGTTCTTTCAAG
TCCACCCATGCCACACGGAAACTATGCTGAAAACATTACTTCCAGAAAAG
AGCAAATGCGAGAACACCTTACTAATGTGGTTGTCAGCAATCGCGCCTAT
TGTCCACCTGGAATTATCAATGCACTACTTCACAAATAAACCAGCTCCAC
AGGAACCCTGCGATACCAATGGTTGAATGGACATTGCATTTCTAACTAGA
GAAGTATTCAACCAGTGTTGTCTTAACATTCAAAGGGCTGGTGAATCGAT
CGGCGATTTTTGGTTCTGGAATGAATTTAAGCATGATAAAGAGCAAAGAT
TCCTTCACAAAGTTTCCACAATCCCTTGGCAAATAACTCCAAACAAAGCT
GAAGAGAGATCACATGGCTTGGAAGATGAGCTTTTTGAAGACAATGAAAC
TCATGATTTAGAATGTGAAGTAGTTGTTCCTTTGGCAATTCAAAAAGAAC
AGAAGAATACATTTATCAAAATGGAGCATCACGTTGTTTATTCGGACAAC
TATTCAGTCCCAGTACTATATTTCAATGGAAGTTATCAAGATGGACGTCC
AATCACATTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCATG
CCATGCGTGATAAATGGTCCTTCATTACACAACAGGAACATCCGTATCTT
CAAAGACCGTTCTTTCAAGTCCACCCATGCCACACGGAAACTATGCTGAA
AACATTACTTCCAGAAAAGAGCAAATGCGAGAACACCTTACTAATGTGGT
TGTCAGCAATCGCGCCTATTGTCCACCTGGAATTATCAATGCACTACTTC
ACAAATAAACCAGCTCCACAGGAACCCTGCGATACCAATGGTTGAATGGA
CATTGCATTTCTAACTAGAGAAGTATTCAACCAGTGTTGTCTTAACATTC
AAAGGGCTGGTGAATCGATCGGCGATTTTTGGTTCTGGAATGAATTTAAG
CATGATAAAGAGCAAAGATTCCTTCACAAAGTTTCCACAATCCCTTGGCA
AATAACTCCAAACAAAGCTGAAGAGAGATCACATGGCTTGGAAGATGAGC
TTTTTGAAGACAATGAAACTCATGATTTAGAATGTGAAGTAGTTGTTCCT
TTGGCAATTCAAAAAGAACAGAAGAATACATTTATCAAAATGGAGCATCA
CGTTGTTTATTCGGACAACTATTCAGTCCCAGTACTATATTTCAATGGAA
GTTATCAAGATGGACGTCCAATCACATTGCAAGAAGTTTGGAACTCAATA
CCTGAACACTACCAGCATGCCATGCGTGATAAATGGTCCTTCATTACACA
ACAGGAACATCCGTATCTTCAAAGACCGTTCTTTCAAGTCCACCCATGCC
ACACGGAAACTATGCTGAAAACATTACTTCCAGAAAAGAGCAAATGCGAG
AACACCTTACTAATGTGGTTGTCAGCAATCGCGCCTATTGTCCACCTGGA
ATTATCAATGCACTACTTCACAAATAAACCAGCTCCACAGGAACCCTGCG
ATACCAATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055077-exon-scaffold_25-1491911889:36336..36466 | TCONS_00055077-exon-scaffold_25-1491911889:36336..36466 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:36336..36466 | TCONS_00055077-exon-scaffold_25-1510915933:36336..36466 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:36336..36466 | TCONS_00055077-exon-scaffold_25-1575043694:36336..36466 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1491911889:36849..36977 | TCONS_00055077-exon-scaffold_25-1491911889:36849..36977 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:36849..36977 | TCONS_00055077-exon-scaffold_25-1510915933:36849..36977 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:36849..36977 | TCONS_00055077-exon-scaffold_25-1575043694:36849..36977 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1491911889:38044..38173 | TCONS_00055077-exon-scaffold_25-1491911889:38044..38173 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:38044..38173 | TCONS_00055077-exon-scaffold_25-1510915933:38044..38173 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:38044..38173 | TCONS_00055077-exon-scaffold_25-1575043694:38044..38173 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1491911889:39127..39221 | TCONS_00055077-exon-scaffold_25-1491911889:39127..39221 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:39127..39221 | TCONS_00055077-exon-scaffold_25-1510915933:39127..39221 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:39127..39221 | TCONS_00055077-exon-scaffold_25-1575043694:39127..39221 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1491911889:45774..45859 | TCONS_00055077-exon-scaffold_25-1491911889:45774..45859 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:45774..45859 | TCONS_00055077-exon-scaffold_25-1510915933:45774..45859 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:45774..45859 | TCONS_00055077-exon-scaffold_25-1575043694:45774..45859 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1491911889:47099..47698 | TCONS_00055077-exon-scaffold_25-1491911889:47099..47698 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1510915933:47099..47698 | TCONS_00055077-exon-scaffold_25-1510915933:47099..47698 | Clytia hemisphaerica | exon |
| TCONS_00055077-exon-scaffold_25-1575043694:47099..47698 | TCONS_00055077-exon-scaffold_25-1575043694:47099..47698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:36336..47698 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007135 | Autophagy-rel_prot_3 |
Blast
BLAST of TCONS_00055077 vs. Swiss-Prot (Human)
Match: ATG10 (Ubiquitin-like-conjugating enzyme ATG10 OS=Homo sapiens GN=ATG10 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.407e-29 Identity = 72/212 (33.96%), Postives = 106/212 (50.00%), Query Frame = 3
Query: 39 FLTREVFNQCCLNIQRAGESIGDFWFWNEFKHDKEQRFLHKVSTIPWQITPNKA----EERSHGLEDELFEDNETHDLE-CEVVVPLAIQKEQKNTFIKMEHHVVYSDNYSVPVLYFNGSYQDGRPITLQEVWNSIPEHYQ-HAMRDKWSFITQQEHPYLQRPFFQVHPCHTETMLKTLLPEKSKCE---NTLLMWLSAIAPIVHLELSMHY 647
F+ + F + C + + IGD W W K D ++ K+ +QI +HG E+ L+ CEV I+ + IK E+HV+YS +Y VPVLYF S+ DGRP+TL+++W + E Y+ ++ W ITQQEHP L +PFF +HPC T + +L K N + WLS + P+V L L + Y
Sbjct: 6 FIGEKTFQRYCAEFIKHSQQIGDSWEWRPSK-DCSDGYMCKIH---FQIKNGSVMSHLGASTHGQTCLPMEEAFELPLDDCEV-----IETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSY 208
The following BLAST results are available for this feature:
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