TCONS_00055078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055078
Unique NameTCONS_00055078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055078 ID=TCONS_00055078|Name=TCONS_00055078|organism=Clytia hemisphaerica|type=transcript|length=736bp
ctaaaatagagattttttttcgattttctgtaAGAACCATTTTCGAAACT
ATGGTTTCCGTTGACTGACTAGCTGTAATATAAAACACATATATTTCAAA
AGCTAGTGTCATTATATCGCACTGTTTATCTACATAATTTTTACACAACA
TCTTATGGAAAGAATAATTACAACCCTGTACTATTGACCCGGTAAGGCGA
AAAAATTGTACCCGGTGGGAGAAATACCTTAAATTTCATCCCTGTTGCGA
AACTGGCTGATTTTTTATCATTACTTGCAAATTACGTATCTTTGAGAATC
CCTACCCATTTCCATCTCCATTTCTTAAAGGCTGCGTTTTACATAAacgt
tcccgtttcatatcagatacatattttatatcaggcCGGTGTCTTCTATT
GTTATATcgtgctgatataaacaaaaaaatgctttcTCCTCTCTCTGACC
AATCTTTCTCCACATTCGTGtaaattcaatgtgaaaaagcttgtgaatta
aaattgacgagtcaGCAAAAGATGTCGCTCTTTCTTATTTaagaacaaaa
cctttaattttatCACTACTTTCTAGAAAATTCTCACCGACCAGGATCAC
TGAGTCAGGAAgtaaaattatttctttaatttttactCTTAGATGGACGT
CCAATCACATTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCA
TGCCATGCGTGATAAATGGTCCTTCATTACACAACA
Run BLAST on NCBI

transcript from alignment at scaffold_25:38485..39220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055078 ID=TCONS_00055078|Name=TCONS_00055078|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at scaffold_25:38485..39220+ (Clytia hemisphaerica)
ctaaaatagagattttttttcgattttctgtaAGAACCATTTTCGAAACT
ATGGTTTCCGTTGACTGACTAGCTGTAATATAAAACACATATATTTCAAA
AGCTAGTGTCATTATATCGCACTGTTTATCTACATAATTTTTACACAACA
TCTTATGGAAAGAATAATTACAACCCTGTACTATTGACCCGGTAAGGCGA
AAAAATTGTACCCGGTGGGAGAAATACCTTAAATTTCATCCCTGTTGCGA
AACTGGCTGATTTTTTATCATTACTTGCAAATTACGTATCTTTGAGAATC
CCTACCCATTTCCATCTCCATTTCTTAAAGGCTGCGTTTTACATAAacgt
tcccgtttcatatcagatacatattttatatcaggcCGGTGTCTTCTATT
GTTATATcgtgctgatataaacaaaaaaatgctttcTCCTCTCTCTGACC
AATCTTTCTCCACATTCGTGtaaattcaatgtgaaaaagcttgtgaatta
aaattgacgagtcaGCAAAAGATGTCGCTCTTTCTTATTTaagaacaaaa
cctttaattttatCACTACTTTCTAGAAAATTCTCACCGACCAGGATCAC
TGAGTCAGGAAgtaaaattatttctttaatttttactCTTAGATGGACGT
CCAATCACATTGCAAGAAGTTTGGAACTCAATACCTGAACACTACCAGCA
TGCCATGCGTGATAAATGGTCCTTCATTACACAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034701XLOC_034701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055078-exon-scaffold_25-1491911889:38485..39220TCONS_00055078-exon-scaffold_25-1491911889:38485..39220Clytia hemisphaericaexon
TCONS_00055078-exon-scaffold_25-1510915933:38485..39220TCONS_00055078-exon-scaffold_25-1510915933:38485..39220Clytia hemisphaericaexon
TCONS_00055078-exon-scaffold_25-1575043694:38485..39220TCONS_00055078-exon-scaffold_25-1575043694:38485..39220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:38485..39220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0656478	0.963381	1.86022	0	0	0	0	0.0582583	0	0	0.0459946	0.183821	0.13949	0	0.0428801	0.151611	0	0.14807	0.31498	0.332498	0	0	0.0748661	0.0746643	0.439681	0	0.0986569	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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