TCONS_00055080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055080
Unique NameTCONS_00055080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055080 ID=TCONS_00055080|Name=TCONS_00055080|organism=Clytia hemisphaerica|type=transcript|length=817bp
ATTGGTTATGTAAAAACCATTTAACGTTTAGCCTGACTCCCGAAAAGGGT
CAGAATAGGAAAACTCTAAAAGTGCGTTTGTTTATCATGTATTACAGTCT
AGTGGTGTGGACACAAATTACTTTAGACAGAAGGATTGGTTAGGTAAATG
GCATGAAAGAGATATTCATCGGTTAGAAGTGTTGAAAAAGTCCGAGCAAA
ATTATCAAGAGCGAATCAAAAGAGCTAACAAAAGAGTCGAGCTACCACCT
TTATTGCCATCAAAAACATTATCAGCAGTCAATCTCGACAACAAGAAGAA
AATATCATCTgacgaaaagaagaaaaaagataaactaCCTCCAGTTACCA
CTTGAATGATGCATCGAAAAATAGACATCATTTTCTCTATTTGTCCGAGT
TTCAATCCCATCATTCCTTGCGTTAATTTCTTGTGCACAATAATGACTTC
CCGAATTTGGAATCAAGACGAAAGGGAGTATGGAATTAAAACTCGGACAA
CatttgaaaagtaataattatgacgtttgtaTAACATAATGCTATTACAC
CTAACGAGTTGTCAAATCAAACTGAACCGACAATCGAATCAAATCTATAA
CCAAATCGAGTGCAATCGAATCTAATCGAACCGAAAAATCAGGATtgaat
tcttgaacttttgattGATGTCCTCCGTCCAATGAATCTATCAAACTTTT
ATTGTAATATTTGATTTAGTTTCAATTCTGTTATCGAACACAATTTTCGA
ATCAAATTTTGCAATATTGTATCGATTGATTCAAttttgattatcttttc
aaaaagtgtgttacaag
Run BLAST on NCBI

transcript from alignment at scaffold_25:39997..43104-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055080 ID=TCONS_00055080|Name=TCONS_00055080|organism=Clytia hemisphaerica|type=transcript|length=3108bp|location=Sequence derived from alignment at scaffold_25:39997..43104- (Clytia hemisphaerica)
ATTGGTTATGTAAAAACCATTTAACGTTTAGCCTGACTCCCGAAAAGGGT
CAGAATAGGAAAACTCTAAAAGTGCGTTTGTTTATCATGTATTACAGTCT
AGTGGTGTGGACACAAATTACTTTAGACAGAAGGATTGGTTAGGTAAGAA
CCTTTTTACGTCTAGCCTGAATCCCGAAAAGGGTCAGAATAGGAAAACTC
TAAAAGTGCGCTTGTTGATAATGGAATACAGTCTAGGGGTACGGAAACAA
GCAATTTTAGACAAAAGGATTAAGTAAGAGTAGGTAAGAATCTTTAAGTT
TAGTCTGTGTCTAAAGTCTCAATTTGAAGAGAAACGGGCCTAGGTTTGAG
CAATTAAATGTTTACACAAAAAATTAACACGATTTTTTCCTTTTTCAAGA
ACAACAGCCGACCATGGCTTTGATTAATTGGGTTTTAAGACTAAATTTTT
AGTTCGTGTTAATTGGTCAGCCTAAGCTGAGCATTCAAATAGGTAAAATT
TTCTTCCACCACTTCCAGTTCCATAAGACGGCAAAAAAAAAATCTGATTA
TCCGATCTCACTTTGATTTCTAAACTTTCTTCCGATCGGGTTAACTTTTT
GGGTACTTTTAGCGTGCGTTGTTTTTACAGATCGTAATGTAGTTTCAAGA
TGGCGGCTCAAGCGATAGTCAGATGTGATAAGTCAGTGTTGTACCAAAGT
ATTTCCAGTGTAAATCTGTTGCAAGTTTCAATTTCTGTCATTTTTTTTTT
TAACTCGGCAAATCAAACACATGATTTTCATCAAGGGGATTCTTTTTCTA
CATTCTTTGAAGGTTTAAAGTCGTTTGCTCAAGTTTTTGTTTATGTTGAA
TTTTCTGATACTTTATACAAAATTTATTTACCCAGACTGGAGGGGCCATC
CATTAGTACGTACACAGTGAAGGGGGGAGAGGGGGTTAGGCAAAGCGTAC
ATCTATTGTTTAAACAAAGTCATTTCTATTGTTCTCTGCGTACAAGGGGG
GAGGGGTTGTCAAATATTTGGAAAATCTTTGCGTACGTACTATATGGACA
ATGCTAAAGAGAAGTATACTTTGAGCTTCTCGTGGGGGGGGGGTTGGAAA
ATTTTTGGAAAATCTTTGCGTACGTACTATATGGTCAATGCTAAAGAGAA
GTATACTTTGGGCTTCTCGGGGGGGGGGGGTTGGAAAATTTTTGGAAAAT
CTTTGCGTACGTACTATATGGTCAATGCTAAAGAGAAGTATACTTTGGGC
TTCTCGGGGGGGGGGGGTTGGAGGAGCTCTCAGGCTTGTTTTACTTAATT
TTAAATCAAGTTATTCAAATGTTTCACATTTTGTACATTATTCAACATAT
TTAGTCTACTCTGTTTCAGTGCATCTCTTACATCTGTTAACCCACTTATT
AAAGCTATCTAGTTAAGCTCTATTGGCTGACCTTCCAGCCTCGGCTGGTT
TATTATAAGTTTACTTATTTTCGTAAAATAAGGTAGGAAGTATAACGTAA
AATATCGACTCTTTATTTATGATTTAATATTATTCTTTAAGGTAAATGGC
ATGAAAGAGATATTCATCGGTTAGAAGTGTTGAAAAAGTCCGAGCAAAAT
TATCAAGAGCGAATCAAAAGAGGTATGTAAGATTTTACAAGAAAGGGAGA
AAAGGGAGGTTTTTTAATAGATCAACAATTGCACCGGAACTTCGTCTTAA
ATTTAGATACCCTGGATGGATATTTTTCGTTCATTTGTATTAGGGACTCA
CTGGTATTTTGGCCAATTTTTAGTTCCACTACCAAAATTTCTGAAAAATC
AGCTTTCTTAAAAAGGTATCTCCTGAATGGAAAATCCGACCTCATTAACA
TGGGTCCATATTTCACCAATAATTCATTTTTTAAGTTAGTCCAAACTTTA
TATTGAGATGAGTTAAACACATTCAAAGCCCTCGGGTGAAGAAATCCAAA
AACTTAAGAGTATTTCATATAAAAATTTTCAGCCAGAGCTTTCTGGTTCT
TCCAACTGTGGTCAAAGCAGAGTTTTAGGTTTGAGACGGAAAACGGATTT
TAAACAGCAAAAAAAAGCACATATTCTTGAAATTTTGAGGTGAATCTTCA
GCATTTTGAAACGGAAAAGCCTCTTTATATATATTTAGATTATTAGATTA
TATATATTTCACCAACACGGAAATCCGTCTAAAAGTCAGAAGAACTTTTG
GGGCGAGATGGAGTTTTTACAAGCCCTTATTTGATTTGGTTGGTCGTAAA
CCAATAATAAAACAATTTTGTTACTTTTTCTAAAGAACGGGTCATTTTTA
TTACTTCAAATGACCAATTATTAAAGTATTTTATAAAAATTCCATCTGAT
CTGGAACTTTTAACACTGTTACGATGTGAACATACAGCAAAATAACTTGA
AATTTTGATGAATCATTCAGCATTTTTAGACAAATAGCCTCTCACTGACA
CGGAAATCAGTCGACGTAAAAATTTCTAACGCTGTTTGTTACGATATGTG
TATATTTTCTTTCAGCTAACAAAAGAGTCGAGCTACCACCTTTATTGCCA
TCAAAAACATTATCAGCAGTCAATCTCGACAACAAGAAGAAAATATCATC
TGACGAAAAGAAGAAAAAAGATAAACTACCTCCAGTTACCACTTGAATGA
TGCATCGAAAAATAGACATCATTTTCTCTATTTGTCCGAGTTTCAATCCC
ATCATTCCTTGCGTTAATTTCTTGTGCACAATAATGACTTCCCGAATTTG
GAATCAAGACGAAAGGGAGTATGGAATTAAAACTCGGACAACATTTGAAA
AGTAATAATTATGACGTTTGTATAACATAATGCTATTACACCTAACGAGT
TGTCAAATCAAACTGAACCGACAATCGAATCAAATCTATAACCAAATCGA
GTGCAATCGAATCTAATCGAACCGAAAAATCAGGATTGAATTCTTGAACT
TTTGATTGATGTCCTCCGTCCAATGAATCTATCAAACTTTTATTGTAATA
TTTGATTTAGTTTCAATTCTGTTATCGAACACAATTTTCGAATCAAATTT
TGCAATATTGTATCGATTGATTCAATTTTGATTATCTTTTCAAAAAGTGT
GTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034702XLOC_034702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055080-exon-scaffold_25-1575043694:42962..43104TCONS_00055080-exon-scaffold_25-1575043694:42962..43104Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1575043694:41483..41563TCONS_00055080-exon-scaffold_25-1575043694:41483..41563Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1575043694:39997..40589TCONS_00055080-exon-scaffold_25-1575043694:39997..40589Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1510915933:42962..43104TCONS_00055080-exon-scaffold_25-1510915933:42962..43104Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1510915933:41483..41563TCONS_00055080-exon-scaffold_25-1510915933:41483..41563Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1510915933:39997..40589TCONS_00055080-exon-scaffold_25-1510915933:39997..40589Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1491911889:42962..43104TCONS_00055080-exon-scaffold_25-1491911889:42962..43104Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1491911889:41483..41563TCONS_00055080-exon-scaffold_25-1491911889:41483..41563Clytia hemisphaericaexon
TCONS_00055080-exon-scaffold_25-1491911889:39997..40589TCONS_00055080-exon-scaffold_25-1491911889:39997..40589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:39997..43104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.51778	0.552098	0.430438	0	0	0	0	0.29503	0.0482395	0	0	2.33166	2.21561	0	0	0	0	0.788176	0.604473	2.01151	2.00564	0.554077	1.38116	3.26252	5.2301	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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