TCONS_00055081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055081
Unique NameTCONS_00055081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055081 ID=TCONS_00055081|Name=TCONS_00055081|organism=Clytia hemisphaerica|type=transcript|length=726bp
ATACTGTCTAGTGATGTGTACACAAATCATTTTAGACAAAAAGATTGGTT
GGGTAAATGGCATGAAAGAGATATTCATCGGTTAGAAGTGTTGAAAAAGT
CCGAGCAAAATTATCAAGAGCGAATCAAAAGAGCTAACAAAAGAGTCGAG
CTACCACCTTTATTGCCATCAAAAACATTATCAGCAGTCAATCTCGACAA
CAAGAAGAAAATATCATCTgacgaaaagaagaaaaaagataaactaCCTC
CAGTTACCACTTGAATGATGCATCGAAAAATAGACATCATTTTCTCTATT
TGTCCGAGTTTCAATCCCATCATTCCTTGCGTTAATTTCTTGTGCACAAT
AATGACTTCCCGAATTTGGAATCAAGACGAAAGGGAGTATGGAATTAAAA
CTCGGACAACatttgaaaagtaataattatgacgtttgtaTAACATAATG
CTATTACACCTAACGAGTTGTCAAATCAAACTGAACCGACAATCGAATCA
AATCTATAACCAAATCGAGTGCAATCGAATCTAATCGAACCGAAAAATCA
GGATtgaattcttgaacttttgattGATGTCCTCCGTCCAATGAATCTAT
CAAACTTTTATTGTAATATTTGATTTAGTTTCAATTCTGTTATCGAACAC
AATTTTCGAATCAAATTTTGCAATATTGTATCGATTGATTCAAttttgat
tatcttttcaaaaagtgtgttacaag
Run BLAST on NCBI

transcript from alignment at scaffold_25:39997..43283-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055081 ID=TCONS_00055081|Name=TCONS_00055081|organism=Clytia hemisphaerica|type=transcript|length=3287bp|location=Sequence derived from alignment at scaffold_25:39997..43283- (Clytia hemisphaerica)
ATACTGTCTAGTGATGTGTACACAAATCATTTTAGACAAAAAGATTGGTT
GGGTAAGTACCATTTAACGTCTAACCTGAATCCTGCGAAAAGGGCCAGAA
TAAACAAACTCCAAAAGTACGTTTGAGTTTGTTGATCGATCATGGATTAT
AGTCTAGTGATAATGCTTTGGACAGAGGGATTGGTTATGTAAAAACCATT
TAACGTTTAGCCTGACTCCCGAAAAGGGTCAGAATAGGAAAACTCTAAAA
GTGCGTTTGTTTATCATGTATTACAGTCTAGTGGTGTGGACACAAATTAC
TTTAGACAGAAGGATTGGTTAGGTAAGAACCTTTTTACGTCTAGCCTGAA
TCCCGAAAAGGGTCAGAATAGGAAAACTCTAAAAGTGCGCTTGTTGATAA
TGGAATACAGTCTAGGGGTACGGAAACAAGCAATTTTAGACAAAAGGATT
AAGTAAGAGTAGGTAAGAATCTTTAAGTTTAGTCTGTGTCTAAAGTCTCA
ATTTGAAGAGAAACGGGCCTAGGTTTGAGCAATTAAATGTTTACACAAAA
AATTAACACGATTTTTTCCTTTTTCAAGAACAACAGCCGACCATGGCTTT
GATTAATTGGGTTTTAAGACTAAATTTTTAGTTCGTGTTAATTGGTCAGC
CTAAGCTGAGCATTCAAATAGGTAAAATTTTCTTCCACCACTTCCAGTTC
CATAAGACGGCAAAAAAAAAATCTGATTATCCGATCTCACTTTGATTTCT
AAACTTTCTTCCGATCGGGTTAACTTTTTGGGTACTTTTAGCGTGCGTTG
TTTTTACAGATCGTAATGTAGTTTCAAGATGGCGGCTCAAGCGATAGTCA
GATGTGATAAGTCAGTGTTGTACCAAAGTATTTCCAGTGTAAATCTGTTG
CAAGTTTCAATTTCTGTCATTTTTTTTTTTAACTCGGCAAATCAAACACA
TGATTTTCATCAAGGGGATTCTTTTTCTACATTCTTTGAAGGTTTAAAGT
CGTTTGCTCAAGTTTTTGTTTATGTTGAATTTTCTGATACTTTATACAAA
ATTTATTTACCCAGACTGGAGGGGCCATCCATTAGTACGTACACAGTGAA
GGGGGGAGAGGGGGTTAGGCAAAGCGTACATCTATTGTTTAAACAAAGTC
ATTTCTATTGTTCTCTGCGTACAAGGGGGGAGGGGTTGTCAAATATTTGG
AAAATCTTTGCGTACGTACTATATGGACAATGCTAAAGAGAAGTATACTT
TGAGCTTCTCGTGGGGGGGGGGTTGGAAAATTTTTGGAAAATCTTTGCGT
ACGTACTATATGGTCAATGCTAAAGAGAAGTATACTTTGGGCTTCTCGGG
GGGGGGGGGTTGGAAAATTTTTGGAAAATCTTTGCGTACGTACTATATGG
TCAATGCTAAAGAGAAGTATACTTTGGGCTTCTCGGGGGGGGGGGGTTGG
AGGAGCTCTCAGGCTTGTTTTACTTAATTTTAAATCAAGTTATTCAAATG
TTTCACATTTTGTACATTATTCAACATATTTAGTCTACTCTGTTTCAGTG
CATCTCTTACATCTGTTAACCCACTTATTAAAGCTATCTAGTTAAGCTCT
ATTGGCTGACCTTCCAGCCTCGGCTGGTTTATTATAAGTTTACTTATTTT
CGTAAAATAAGGTAGGAAGTATAACGTAAAATATCGACTCTTTATTTATG
ATTTAATATTATTCTTTAAGGTAAATGGCATGAAAGAGATATTCATCGGT
TAGAAGTGTTGAAAAAGTCCGAGCAAAATTATCAAGAGCGAATCAAAAGA
GGTATGTAAGATTTTACAAGAAAGGGAGAAAAGGGAGGTTTTTTAATAGA
TCAACAATTGCACCGGAACTTCGTCTTAAATTTAGATACCCTGGATGGAT
ATTTTTCGTTCATTTGTATTAGGGACTCACTGGTATTTTGGCCAATTTTT
AGTTCCACTACCAAAATTTCTGAAAAATCAGCTTTCTTAAAAAGGTATCT
CCTGAATGGAAAATCCGACCTCATTAACATGGGTCCATATTTCACCAATA
ATTCATTTTTTAAGTTAGTCCAAACTTTATATTGAGATGAGTTAAACACA
TTCAAAGCCCTCGGGTGAAGAAATCCAAAAACTTAAGAGTATTTCATATA
AAAATTTTCAGCCAGAGCTTTCTGGTTCTTCCAACTGTGGTCAAAGCAGA
GTTTTAGGTTTGAGACGGAAAACGGATTTTAAACAGCAAAAAAAAGCACA
TATTCTTGAAATTTTGAGGTGAATCTTCAGCATTTTGAAACGGAAAAGCC
TCTTTATATATATTTAGATTATTAGATTATATATATTTCACCAACACGGA
AATCCGTCTAAAAGTCAGAAGAACTTTTGGGGCGAGATGGAGTTTTTACA
AGCCCTTATTTGATTTGGTTGGTCGTAAACCAATAATAAAACAATTTTGT
TACTTTTTCTAAAGAACGGGTCATTTTTATTACTTCAAATGACCAATTAT
TAAAGTATTTTATAAAAATTCCATCTGATCTGGAACTTTTAACACTGTTA
CGATGTGAACATACAGCAAAATAACTTGAAATTTTGATGAATCATTCAGC
ATTTTTAGACAAATAGCCTCTCACTGACACGGAAATCAGTCGACGTAAAA
ATTTCTAACGCTGTTTGTTACGATATGTGTATATTTTCTTTCAGCTAACA
AAAGAGTCGAGCTACCACCTTTATTGCCATCAAAAACATTATCAGCAGTC
AATCTCGACAACAAGAAGAAAATATCATCTGACGAAAAGAAGAAAAAAGA
TAAACTACCTCCAGTTACCACTTGAATGATGCATCGAAAAATAGACATCA
TTTTCTCTATTTGTCCGAGTTTCAATCCCATCATTCCTTGCGTTAATTTC
TTGTGCACAATAATGACTTCCCGAATTTGGAATCAAGACGAAAGGGAGTA
TGGAATTAAAACTCGGACAACATTTGAAAAGTAATAATTATGACGTTTGT
ATAACATAATGCTATTACACCTAACGAGTTGTCAAATCAAACTGAACCGA
CAATCGAATCAAATCTATAACCAAATCGAGTGCAATCGAATCTAATCGAA
CCGAAAAATCAGGATTGAATTCTTGAACTTTTGATTGATGTCCTCCGTCC
AATGAATCTATCAAACTTTTATTGTAATATTTGATTTAGTTTCAATTCTG
TTATCGAACACAATTTTCGAATCAAATTTTGCAATATTGTATCGATTGAT
TCAATTTTGATTATCTTTTCAAAAAGTGTGTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034702XLOC_034702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055081-exon-scaffold_25-1575043694:43232..43283TCONS_00055081-exon-scaffold_25-1575043694:43232..43283Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1575043694:41483..41563TCONS_00055081-exon-scaffold_25-1575043694:41483..41563Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1575043694:39997..40589TCONS_00055081-exon-scaffold_25-1575043694:39997..40589Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1510915933:43232..43283TCONS_00055081-exon-scaffold_25-1510915933:43232..43283Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1510915933:41483..41563TCONS_00055081-exon-scaffold_25-1510915933:41483..41563Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1510915933:39997..40589TCONS_00055081-exon-scaffold_25-1510915933:39997..40589Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1491911889:43232..43283TCONS_00055081-exon-scaffold_25-1491911889:43232..43283Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1491911889:41483..41563TCONS_00055081-exon-scaffold_25-1491911889:41483..41563Clytia hemisphaericaexon
TCONS_00055081-exon-scaffold_25-1491911889:39997..40589TCONS_00055081-exon-scaffold_25-1491911889:39997..40589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:39997..43283 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.234964	0	0.459824	0.00506895	0.092541	0.0731272	0	0	0	0	0	0.0992208	0.327037	0	0	0	0.408337	0.426411	0.513204	0.929796	2.31807	0	0.000201881	2.67733e-08	0	0	0.0178985	0	0.540195	0.956933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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