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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055082 ID=TCONS_00055082|Name=TCONS_00055082|organism=Clytia hemisphaerica|type=transcript|length=1094bp
CAAACTTTTTAAAGCCTTGAGATGTTCTTAGATGTTCTTAACGTCTTgtg
ttttaagccaaaaaatgttcttacagtaacatgccattttttgagtattt
tgtccatttttcaaagaaatcggGGGTTTCAGGgcccgcaaagccttaaa
atgttcttaacttgttcttaaataTTTAAGCCACCCAGtccttgttctta
tatagtttgttcttataaaaaccgtGTATATACACACAAATAATGACAGA
AACAGAAGACACAGCAGTGATGTACAACGAGTTATCGCAATTCCTCCGAT
CCAATTTATTCCCATCCGTCGATCATCCCTGGAGAACAAGCTCAAAAATT
ACGTTTGTTGACCATGGAATACAGTCTAGTGATGTGGACACAAATCATTT
TAGACAAAAAGATTGGTTGGGTAAATGGCATGAAAGAGATATTCATCGGT
TAGAAGTGTTGAAAAAGTCCGAGCAAAATTATCAAGAGCGAATCAAAAGA
GCTAACAAAAGAGTCGAGCTACCACCTTTATTGCCATCAAAAACATTATC
AGCAGTCAATCTCGACAACAAGAAGAAAATATCATCTgacgaaaagaaga
aaaaagataaactaCCTCCAGTTACCACTTGAATGATGCATCGAAAAATA
GACATCATTTTCTCTATTTGTCCGAGTTTCAATCCCATCATTCCTTGCGT
TAATTTCTTGTGCACAATAATGACTTCCCGAATTTGGAATCAAGACGAAA
GGGAGTATGGAATTAAAACTCGGACAACatttgaaaagtaataattatga
cgtttgtaTAACATAATGCTATTACACCTAACGAGTTGTCAAATCAAACT
GAACCGACAATCGAATCAAATCTATAACCAAATCGAGTGCAATCGAATCT
AATCGAACCGAAAAATCAGGATtgaattcttgaacttttgattGATGTCC
TCCGTCCAATGAATCTATCAAACTTTTATTGTAATATTTGATTTAGTTTC
AATTCTGTTATCGAACACAATTTTCGAATCAAATTTTGCAATATTGTATC
GATTGATTCAAttttgattatcttttcaaaaagtgtgttacaag Run BLAST on NCBI protein sequence of TCONS_00055082-protein >TCONS_00055082-protein ID=TCONS_00055082-protein|Name=TCONS_00055082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MTETEDTAVMYNELSQFLRSNLFPSVDHPWRTSSKITFVDHGIQSSDVDT
NHFRQKDWLGKWHERDIHRLEVLKKSEQNYQERIKRANKRVELPPLLPSK
TLSAVNLDNKKKISSDEKKKKDKLPPVTT Run BLAST on NCBI transcript from alignment at scaffold_25:39997..43785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055082 ID=TCONS_00055082|Name=TCONS_00055082|organism=Clytia hemisphaerica|type=transcript|length=3789bp|location=Sequence derived from alignment at scaffold_25:39997..43785- (Clytia hemisphaerica)
CAAACTTTTTAAAGCCTTGAGATGTTCTTAGATGTTCTTAACGTCTTGTG
TTTTAAGCCAAAAAATGTTCTTACAGTAACATGCCATTTTTTGAGTATTT
TGTCCATTTTTCAAAGAAATCGGGGGTTTCAGGGCCCGCAAAGCCTTAAA
ATGTTCTTAACTTGTTCTTAAATATTTAAGCCACCCAGTCCTTGTTCTTA
TATAGTTTGTTCTTATAAAAACCGTGTATATACACACAAATAATGACAGA
AACAGAAGACACAGCAGTGATGTACAACGAGTTATCGCAATTCCTCCGAT
CCAATTTATTCCCATCCGTCGATCATCCCTGGAGAACAAGCTCAAAAATT
ACGTTTGTTGACCATGGAATACAGTCTAGTGATGTGGACACAAATCATTT
TAGACAAAAAGATTGGTTGGGTAAGTACCATTTAACGTCTAGCCTGAGTC
CTGAAAAGGGTCAGAATAAACAAACCCCAAAAGTACGTTTGTCGACCATG
GAATACTGTCTAGTGATGTGTACACAAATCATTTTAGACAAAAAGATTGG
TTGGGTAAGTACCATTTAACGTCTAACCTGAATCCTGCGAAAAGGGCCAG
AATAAACAAACTCCAAAAGTACGTTTGAGTTTGTTGATCGATCATGGATT
ATAGTCTAGTGATAATGCTTTGGACAGAGGGATTGGTTATGTAAAAACCA
TTTAACGTTTAGCCTGACTCCCGAAAAGGGTCAGAATAGGAAAACTCTAA
AAGTGCGTTTGTTTATCATGTATTACAGTCTAGTGGTGTGGACACAAATT
ACTTTAGACAGAAGGATTGGTTAGGTAAGAACCTTTTTACGTCTAGCCTG
AATCCCGAAAAGGGTCAGAATAGGAAAACTCTAAAAGTGCGCTTGTTGAT
AATGGAATACAGTCTAGGGGTACGGAAACAAGCAATTTTAGACAAAAGGA
TTAAGTAAGAGTAGGTAAGAATCTTTAAGTTTAGTCTGTGTCTAAAGTCT
CAATTTGAAGAGAAACGGGCCTAGGTTTGAGCAATTAAATGTTTACACAA
AAAATTAACACGATTTTTTCCTTTTTCAAGAACAACAGCCGACCATGGCT
TTGATTAATTGGGTTTTAAGACTAAATTTTTAGTTCGTGTTAATTGGTCA
GCCTAAGCTGAGCATTCAAATAGGTAAAATTTTCTTCCACCACTTCCAGT
TCCATAAGACGGCAAAAAAAAAATCTGATTATCCGATCTCACTTTGATTT
CTAAACTTTCTTCCGATCGGGTTAACTTTTTGGGTACTTTTAGCGTGCGT
TGTTTTTACAGATCGTAATGTAGTTTCAAGATGGCGGCTCAAGCGATAGT
CAGATGTGATAAGTCAGTGTTGTACCAAAGTATTTCCAGTGTAAATCTGT
TGCAAGTTTCAATTTCTGTCATTTTTTTTTTTAACTCGGCAAATCAAACA
CATGATTTTCATCAAGGGGATTCTTTTTCTACATTCTTTGAAGGTTTAAA
GTCGTTTGCTCAAGTTTTTGTTTATGTTGAATTTTCTGATACTTTATACA
AAATTTATTTACCCAGACTGGAGGGGCCATCCATTAGTACGTACACAGTG
AAGGGGGGAGAGGGGGTTAGGCAAAGCGTACATCTATTGTTTAAACAAAG
TCATTTCTATTGTTCTCTGCGTACAAGGGGGGAGGGGTTGTCAAATATTT
GGAAAATCTTTGCGTACGTACTATATGGACAATGCTAAAGAGAAGTATAC
TTTGAGCTTCTCGTGGGGGGGGGGTTGGAAAATTTTTGGAAAATCTTTGC
GTACGTACTATATGGTCAATGCTAAAGAGAAGTATACTTTGGGCTTCTCG
GGGGGGGGGGGTTGGAAAATTTTTGGAAAATCTTTGCGTACGTACTATAT
GGTCAATGCTAAAGAGAAGTATACTTTGGGCTTCTCGGGGGGGGGGGGTT
GGAGGAGCTCTCAGGCTTGTTTTACTTAATTTTAAATCAAGTTATTCAAA
TGTTTCACATTTTGTACATTATTCAACATATTTAGTCTACTCTGTTTCAG
TGCATCTCTTACATCTGTTAACCCACTTATTAAAGCTATCTAGTTAAGCT
CTATTGGCTGACCTTCCAGCCTCGGCTGGTTTATTATAAGTTTACTTATT
TTCGTAAAATAAGGTAGGAAGTATAACGTAAAATATCGACTCTTTATTTA
TGATTTAATATTATTCTTTAAGGTAAATGGCATGAAAGAGATATTCATCG
GTTAGAAGTGTTGAAAAAGTCCGAGCAAAATTATCAAGAGCGAATCAAAA
GAGGTATGTAAGATTTTACAAGAAAGGGAGAAAAGGGAGGTTTTTTAATA
GATCAACAATTGCACCGGAACTTCGTCTTAAATTTAGATACCCTGGATGG
ATATTTTTCGTTCATTTGTATTAGGGACTCACTGGTATTTTGGCCAATTT
TTAGTTCCACTACCAAAATTTCTGAAAAATCAGCTTTCTTAAAAAGGTAT
CTCCTGAATGGAAAATCCGACCTCATTAACATGGGTCCATATTTCACCAA
TAATTCATTTTTTAAGTTAGTCCAAACTTTATATTGAGATGAGTTAAACA
CATTCAAAGCCCTCGGGTGAAGAAATCCAAAAACTTAAGAGTATTTCATA
TAAAAATTTTCAGCCAGAGCTTTCTGGTTCTTCCAACTGTGGTCAAAGCA
GAGTTTTAGGTTTGAGACGGAAAACGGATTTTAAACAGCAAAAAAAAGCA
CATATTCTTGAAATTTTGAGGTGAATCTTCAGCATTTTGAAACGGAAAAG
CCTCTTTATATATATTTAGATTATTAGATTATATATATTTCACCAACACG
GAAATCCGTCTAAAAGTCAGAAGAACTTTTGGGGCGAGATGGAGTTTTTA
CAAGCCCTTATTTGATTTGGTTGGTCGTAAACCAATAATAAAACAATTTT
GTTACTTTTTCTAAAGAACGGGTCATTTTTATTACTTCAAATGACCAATT
ATTAAAGTATTTTATAAAAATTCCATCTGATCTGGAACTTTTAACACTGT
TACGATGTGAACATACAGCAAAATAACTTGAAATTTTGATGAATCATTCA
GCATTTTTAGACAAATAGCCTCTCACTGACACGGAAATCAGTCGACGTAA
AAATTTCTAACGCTGTTTGTTACGATATGTGTATATTTTCTTTCAGCTAA
CAAAAGAGTCGAGCTACCACCTTTATTGCCATCAAAAACATTATCAGCAG
TCAATCTCGACAACAAGAAGAAAATATCATCTGACGAAAAGAAGAAAAAA
GATAAACTACCTCCAGTTACCACTTGAATGATGCATCGAAAAATAGACAT
CATTTTCTCTATTTGTCCGAGTTTCAATCCCATCATTCCTTGCGTTAATT
TCTTGTGCACAATAATGACTTCCCGAATTTGGAATCAAGACGAAAGGGAG
TATGGAATTAAAACTCGGACAACATTTGAAAAGTAATAATTATGACGTTT
GTATAACATAATGCTATTACACCTAACGAGTTGTCAAATCAAACTGAACC
GACAATCGAATCAAATCTATAACCAAATCGAGTGCAATCGAATCTAATCG
AACCGAAAAATCAGGATTGAATTCTTGAACTTTTGATTGATGTCCTCCGT
CCAATGAATCTATCAAACTTTTATTGTAATATTTGATTTAGTTTCAATTC
TGTTATCGAACACAATTTTCGAATCAAATTTTGCAATATTGTATCGATTG
ATTCAATTTTGATTATCTTTTCAAAAAGTGTGTTACAAG Coding sequence (CDS) from alignment at scaffold_25:39997..43785- >TCONS_00055082 ID=TCONS_00055082|Name=TCONS_00055082|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_25:39997..43785- (Clytia hemisphaerica)
CTAACAAAAGAGTCGAGCTACCACCTTTATTGCCATCAAAAACATTATCA
GCAGTCAATCTCGACAACAAGAAGAAAATATCATCTGACGAAAAGAAGAA
AAAAGATAAACTACCTCCAGTTACCACTTGAGTAAATGGCATGAAAGAGA
TATTCATCGGTTAGAAGTGTTGAAAAAGTCCGAGCAAAATTATCAAGAGC
GAATCAAAAGAGATGACAGAAACAGAAGACACAGCAGTGATGTACAACGA
GTTATCGCAATTCCTCCGATCCAATTTATTCCCATCCGTCGATCATCCCT
GGAGAACAAGCTCAAAAATTACGTTTGTTGACCATGGAATACAGTCTAGT
GATGTGGACACAAATCATTTTAGACAAAAAGATTGGTTGGCTAACAAAAG
AGTCGAGCTACCACCTTTATTGCCATCAAAAACATTATCAGCAGTCAATC
TCGACAACAAGAAGAAAATATCATCTGACGAAAAGAAGAAAAAAGATAAA
CTACCTCCAGTTACCACTTGAGTAAATGGCATGAAAGAGATATTCATCGG
TTAGAAGTGTTGAAAAAGTCCGAGCAAAATTATCAAGAGCGAATCAAAAG
AGATGACAGAAACAGAAGACACAGCAGTGATGTACAACGAGTTATCGCAA
TTCCTCCGATCCAATTTATTCCCATCCGTCGATCATCCCTGGAGAACAAG
CTCAAAAATTACGTTTGTTGACCATGGAATACAGTCTAGTGATGTGGACA
CAAATCATTTTAGACAAAAAGATTGGTTGGCTAACAAAAGAGTCGAGCTA
CCACCTTTATTGCCATCAAAAACATTATCAGCAGTCAATCTCGACAACAA
GAAGAAAATATCATCTGACGAAAAGAAGAAAAAAGATAAACTACCTCCAG
TTACCACTTGAGTAAATGGCATGAAAGAGATATTCATCGGTTAGAAGTGT
TGAAAAAGTCCGAGCAAAATTATCAAGAGCGAATCAAAAGAGATGACAGA
AACAGAAGACACAGCAGTGATGTACAACGAGTTATCGCAATTCCTCCGAT
CCAATTTATTCCCATCCGTCGATCATCCCTGGAGAACAAGCTCAAAAATT
ACGTTTGTTGACCATGGAATACAGTCTAGTGATGTGGACACAAATCATTT
TAGACAAAAAGATTGGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055082-exon-scaffold_25-1575043694:43366..43785 | TCONS_00055082-exon-scaffold_25-1575043694:43366..43785 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1575043694:41483..41563 | TCONS_00055082-exon-scaffold_25-1575043694:41483..41563 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1575043694:39997..40589 | TCONS_00055082-exon-scaffold_25-1575043694:39997..40589 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1510915933:43366..43785 | TCONS_00055082-exon-scaffold_25-1510915933:43366..43785 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1510915933:41483..41563 | TCONS_00055082-exon-scaffold_25-1510915933:41483..41563 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1510915933:39997..40589 | TCONS_00055082-exon-scaffold_25-1510915933:39997..40589 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1491911889:43366..43785 | TCONS_00055082-exon-scaffold_25-1491911889:43366..43785 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1491911889:41483..41563 | TCONS_00055082-exon-scaffold_25-1491911889:41483..41563 | Clytia hemisphaerica | exon |
| TCONS_00055082-exon-scaffold_25-1491911889:39997..40589 | TCONS_00055082-exon-scaffold_25-1491911889:39997..40589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:39997..43785 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029234 | TEX33_prot |
Blast
The following BLAST results are available for this feature:
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