TCONS_00055083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055083
Unique NameTCONS_00055083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055083 ID=TCONS_00055083|Name=TCONS_00055083|organism=Clytia hemisphaerica|type=transcript|length=373bp
TGGAAATTTCCCCATTGGTAGAATTTCCAGAAGATTTGAAGGAGGATGGC
TTACCTCTTTTGTTGAAGGATGACTGACTCCTGACCAACCAACCACTGAA
GGCACCTCTGTTTCCACGCCTCCTATCTCCTCCTTGATCTGCATTTGATA
GAGAGCTCCTGTGAAAGGGCTTCTTGGATACCGGCTTGGGTGATTCAAGA
TTTGACAATgcatcttttgatttctttttggatttggCTAACTTGACAAT
GAGATCCTCAAACTTTTCACCAAAAAGGTTGCAAGATTTTCCATTGaaaa
cttcttcattttcacttaGAAGTTCCTTGGCTCTCTTAGAGTCGCCTGTC
ATATTTTCAACCATGTTTAAACG
Run BLAST on NCBI

protein sequence of TCONS_00055083-protein

>TCONS_00055083-protein ID=TCONS_00055083-protein|Name=TCONS_00055083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
RLNMVENMTGDSKRAKELLSENEEVFNGKSCNLFGEKFEDLIVKLAKSKK
KSKDALSNLESPKPVSKKPFHRSSLSNADQGGDRRRGNRGAFSGWLVRSQ
SSFNKRGKPSSFKSSGNSTNGEIS
Run BLAST on NCBI

transcript from alignment at scaffold_25:13918..14290

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055083 ID=TCONS_00055083|Name=TCONS_00055083|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_25:13918..14290 (Clytia hemisphaerica)
CGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAAGAGAGCCAAGGA
ACTTCtaagtgaaaatgaagaagttttCAATGGAAAATCTTGCAACCTTT
TTGGTGAAAAGTTTGAGGATCTCATTGTCAAGTTAGccaaatccaaaaag
aaatcaaaagatgcATTGTCAAATCTTGAATCACCCAAGCCGGTATCCAA
GAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATA
GGAGGCGTGGAAACAGAGGTGCCTTCAGTGGTTGGTTGGTCAGGAGTCAG
TCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAA
TTCTACCAATGGGGAAATTTCCA

Coding sequence (CDS) from alignment at scaffold_25:13918..14290

>TCONS_00055083 ID=TCONS_00055083|Name=TCONS_00055083|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_25:13918..14290 (Clytia hemisphaerica)
CGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAAGAGAGCCAAGGA
ACTTCtaagtgaaaatgaagaagttttCAATGGAAAATCTTGCAACCTTT
TTGGTGAAAAGTTTGAGGATCTCATTGTCAAGTTAGccaaatccaaaaag
aaatcaaaagatgcATTGTCAAATCTTGAATCACCCAAGCCGGTATCCAA
GAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATA
GGAGGCGTGGAAACAGAGGTGCCTTCAGTGGTTGGTTGGTCAGGAGTCAG
TCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAA
TTCTACCAATGGGGAAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034703XLOC_034703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055083-exon-scaffold_25-1491911889:13918..14290TCONS_00055083-exon-scaffold_25-1491911889:13918..14290Clytia hemisphaericaexon
TCONS_00055083-exon-scaffold_25-1510915933:13918..14290TCONS_00055083-exon-scaffold_25-1510915933:13918..14290Clytia hemisphaericaexon
TCONS_00055083-exon-scaffold_25-1575043694:13918..14290TCONS_00055083-exon-scaffold_25-1575043694:13918..14290Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055083-proteinTCONS_00055083-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:13918..14290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.489875	0	1.27799	0.963186	1.79993	0.781127	1.5138	1.1087	0	0	0.188046	1.64084	0	0	0.162396	0	0	0.240638	0	0	0.248037	0.225502	1.65499	3.50294	0.296628	0	0.17927	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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