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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055084 ID=TCONS_00055084|Name=TCONS_00055084|organism=Clytia hemisphaerica|type=transcript|length=1219bp
TCTGACGATCATTGATAAATATAGCGGCTGGAACTGCCTGTATCATTTCG
GACCCAATGAAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTC
TTCACTAACTACGGCGTTCCAGAAGAATTCAGTTCAGATGGAGGACCTCA
GTTAACCGCAAACAAGTTCCAACAATTTTTATCAGATTGGGGAGTCAAAC
ACCGTCTATCATCAGCAGAGTACCCCCAGTCTAATGGCAGAGCAGAGCTA
GGGGTGAAAGCAGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGG
CACAATCGACAACAACAAGGCTTCTCGAGCAATCTTACAATACAGAAATA
CTCCTCTACCAGATCTCAAACTCAGTCCTGCCCAAATCCTATTTCACCGC
CAGCTGCGTGACCACATACCCACACACCCATCCCACTATCAGCTTCACTC
ATCATGGGTGATAGACGCAAGACAACGGGAAGAAGCATTCTCCAAACGAA
ACCATGTCATCAGTGAGAAGTACAACAGACACGCCAAAACATTACCGTCC
CTATCAGTTGGAACCGCTGTCGTCATCCAAAACCGTAGTAAGAAGCATCA
ACGCCGATGGATCCGCTCTGGGATGATTGTAGAAACACTCTCTAACAGAC
AATACAGAGTCAGAACCAATGGCTCAGGGAGGGTGACACTGCAAAATCAT
CGCTTCCTTCGACCAGCAACATTTGTATCACCAACAGCACTACCCACACC
CACCAATCTGCTTCCAGCCTCACCATTAGAGACCACTCCTCCAACTATTC
CTCATCCAACAGTTCCTATGCCCGCTCAGCCTCAGCCAGCACAACCAACA
CAAGCAATAGTTACCAGATCGTCATCAAATATCCTACGACGATTAGCAAC
TCATAACGCGCCTGGCCTCTTGGAACAACAACCACTTGCTCCCCGCCGAT
AGGGGAAGGAGCCATTGAACTGTATATAAAGAAACGTTGAActgtatata
taaaaagaaaccgAACACTATCTACAGTGACCATGACCTCTCCGGGAAGG
GGAGATGTTCAGATtagtttatatttttctttcttttcatttagatCTAA
TGTATTACAAACAATATATTTAGATGTGGCCTTAGCCATCATTGAAACTA
ATTCGTTTCCTTCAATCACCTTTCTAcacatattgatgtaactgccaagC
AAGTCAAGAGCAATCTTTC Run BLAST on NCBI protein sequence of TCONS_00055084-protein >TCONS_00055084-protein ID=TCONS_00055084-protein|Name=TCONS_00055084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
LTIIDKYSGWNCLYHFGPNEATSATLISTCRTLFTNYGVPEEFSSDGGPQ
LTANKFQQFLSDWGVKHRLSSAEYPQSNGRAELGVKAAKRILLDNLSPNG
TIDNNKASRAILQYRNTPLPDLKLSPAQILFHRQLRDHIPTHPSHYQLHS
SWVIDARQREEAFSKRNHVISEKYNRHAKTLPSLSVGTAVVIQNRSKKHQ
RRWIRSGMIVETLSNRQYRVRTNGSGRVTLQNHRFLRPATFVSPTALPTP
TNLLPASPLETTPPTIPHPTVPMPAQPQPAQPTQAIVTRSSSNILRRLAT
HNAPGLLEQQPLAPRR Run BLAST on NCBI transcript from alignment at scaffold_25:20100..21318 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055084 ID=TCONS_00055084|Name=TCONS_00055084|organism=Clytia hemisphaerica|type=transcript|length=1219bp|location=Sequence derived from alignment at scaffold_25:20100..21318 (Clytia hemisphaerica)
GAAAGATTGCTCTTGACTTGcttggcagttacatcaatatgtgTAGAAAG
GTGATTGAAGGAAACGAATTAGTTTCAATGATGGCTAAGGCCACATCTAA
ATATATTGTTTGTAATACATTAGatctaaatgaaaagaaagaaaaatata
aactaATCTGAACATCTCCCCTTCCCGGAGAGGTCATGGTCACTGTAGAT
AGTGTTcggtttctttttatatatacagTTCAACGTTTCTTTATATACAG
TTCAATGGCTCCTTCCCCTATCGGCGGGGAGCAAGTGGTTGTTGTTCCAA
GAGGCCAGGCGCGTTATGAGTTGCTAATCGTCGTAGGATATTTGATGACG
ATCTGGTAACTATTGCTTGTGTTGGTTGTGCTGGCTGAGGCTGAGCGGGC
ATAGGAACTGTTGGATGAGGAATAGTTGGAGGAGTGGTCTCTAATGGTGA
GGCTGGAAGCAGATTGGTGGGTGTGGGTAGTGCTGTTGGTGATACAAATG
TTGCTGGTCGAAGGAAGCGATGATTTTGCAGTGTCACCCTCCCTGAGCCA
TTGGTTCTGACTCTGTATTGTCTGTTAGAGAGTGTTTCTACAATCATCCC
AGAGCGGATCCATCGGCGTTGATGCTTCTTACTACGGTTTTGGATGACGA
CAGCGGTTCCAACTGATAGGGACGGTAATGTTTTGGCGTGTCTGTTGTAC
TTCTCACTGATGACATGGTTTCGTTTGGAGAATGCTTCTTCCCGTTGTCT
TGCGTCTATCACCCATGATGAGTGAAGCTGATAGTGGGATGGGTGTGTGG
GTATGTGGTCACGCAGCTGGCGGTGAAATAGGATTTGGGCAGGACTGAGT
TTGAGATCTGGTAGAGGAGTATTTCTGTATTGTAAGATTGCTCGAGAAGC
CTTGTTGTTGTCGATTGTGCCATTTGGTGATAAGTTATCGAGTAGAATTC
TTTTTGCTGCTTTCACCCCTAGCTCTGCTCTGCCATTAGACTGGGGGTAC
TCTGCTGATGATAGACGGTGTTTGACTCCCCAATCTGATAAAAATTGTTG
GAACTTGTTTGCGGTTAACTGAGGTCCTCCATCTGAACTGAATTCTTCTG
GAACGCCGTAGTTAGTGAAGAGGGTGCGACAAGTGGATATCAGGGTGGCA
CTGGTGGCTTCATTGGGTCCGAAATGATACAGGCAGTTCCAGCCGCTATA
TTTATCAATGATCGTCAGA Coding sequence (CDS) from alignment at scaffold_25:20100..21318 >TCONS_00055084 ID=TCONS_00055084|Name=TCONS_00055084|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_25:20100..21318 (Clytia hemisphaerica)
CTATCGGCGGGGAGCAAGTGGTTGTTGTTCCAAGAGGCCAGGCGCGTTAT
GAGTTGCTAATCGTCGTAGGATATTTGATGACGATCTGGTAACTATTGCT
TGTGTTGGTTGTGCTGGCTGAGGCTGAGCGGGCATAGGAACTGTTGGATG
AGGAATAGTTGGAGGAGTGGTCTCTAATGGTGAGGCTGGAAGCAGATTGG
TGGGTGTGGGTAGTGCTGTTGGTGATACAAATGTTGCTGGTCGAAGGAAG
CGATGATTTTGCAGTGTCACCCTCCCTGAGCCATTGGTTCTGACTCTGTA
TTGTCTGTTAGAGAGTGTTTCTACAATCATCCCAGAGCGGATCCATCGGC
GTTGATGCTTCTTACTACGGTTTTGGATGACGACAGCGGTTCCAACTGAT
AGGGACGGTAATGTTTTGGCGTGTCTGTTGTACTTCTCACTGATGACATG
GTTTCGTTTGGAGAATGCTTCTTCCCGTTGTCTTGCGTCTATCACCCATG
ATGAGTGAAGCTGATAGTGGGATGGGTGTGTGGGTATGTGGTCACGCAGC
TGGCGGTGAAATAGGATTTGGGCAGGACTGAGTTTGAGATCTGGTAGAGG
AGTATTTCTGTATTGTAAGATTGCTCGAGAAGCCTTGTTGTTGTCGATTG
TGCCATTTGGTGATAAGTTATCGAGTAGAATTCTTTTTGCTGCTTTCACC
CCTAGCTCTGCTCTGCCATTAGACTGGGGGTACTCTGCTGATGATAGACG
GTGTTTGACTCCCCAATCTGATAAAAATTGTTGGAACTTGTTTGCGGTTA
ACTGAGGTCCTCCATCTGAACTGAATTCTTCTGGAACGCCGTAGTTAGTG
AAGAGGGTGCGACAAGTGGATATCAGGGTGGCACTGGTGGCTTCATTGGG
TCCGAAATGATACAGGCAGTTCCAGCCGCTATATTTATCAATGATCGTCA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055084-exon-scaffold_25-1491911889:20100..21318 | TCONS_00055084-exon-scaffold_25-1491911889:20100..21318 | Clytia hemisphaerica | exon |
| TCONS_00055084-exon-scaffold_25-1510915933:20100..21318 | TCONS_00055084-exon-scaffold_25-1510915933:20100..21318 | Clytia hemisphaerica | exon |
| TCONS_00055084-exon-scaffold_25-1575043694:20100..21318 | TCONS_00055084-exon-scaffold_25-1575043694:20100..21318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:20100..21318 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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