TCONS_00055085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055085
Unique NameTCONS_00055085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055085 ID=TCONS_00055085|Name=TCONS_00055085|organism=Clytia hemisphaerica|type=transcript|length=1416bp
caagTAGTTgcattgaatttattttttccaattgATGCCTGGCTTTAAGT
ATCTGATTACTAAAATTCTACAAATCCTATACATATCACATAATATATAA
TATCTTCTATTTCACCCATTTCATAATATCTATATCATTTATAAATAGAA
ACAATCCAAAGAAACAATAACAAATCCAAATCAAGATACCATACCGATAA
CTGTTTTACCTCTAGCATGACCTTTCTCTACATATTTATAAGCATTAACA
ATATCATCCAATGGAAAAACCTTGTCCACTAAGGTTTTAATATTACCATT
TTCAATAAGAGGTTTGATGTGATCAAGAACCATACCGTTAGGCTTGAAAA
ATCCCCATTGGTACTGCCCTTTGCCGCTACTGAGCTGTTCAATACTGCTT
TTAGCATATTTTCCACCAGCATCTATGAGCCCAAGTGTCATCCCTTTTGA
ATCTGTATCAGGCAAAAGAGTAGGTCTCAAAGACACATATTTAGATTTTG
AGCTCTcttttaaaacctttttgtaTAGATTAACATAACGTTCATTTTGT
GTGTCAAGTATAACATCATAGGGGCCATTATTTTGCAAATCATTCTCATA
TGTATTACTAGTATAATCTAAAACATTATAGATGTCAATATTGTTTAAAA
TAGATACACCATTTGGTGCACAAGCTGTTGTTACATTGTGTCCGTATGCT
TTACAAAGTTGAACAGCAAATGATCCAATACCACCTGTCCCGCCAGGTAT
AAATATATTGAGTTTGCGTGAGCCCATTATTGACACAGCACCTGAGTCCA
TCAATGCGCTCCATGTGGTACATGCCACATAAGGTAATGAAGCAGCCTCA
ATGTGAGTTAGGTTTACAGGTTTAGGACTTATCTCAGATTTGTTTACGAT
AACATATTCAGCATGTGTACCTTGTCCTGTTACCCATCTTACACCATAAA
CAGGGTCACCTCTCTTGAATCTTTTAAAAAGTCGACCACTTTTAACAACA
ACACCTGAAAAATCTCTACCCAGAATTAGTGGGAATTCTTTACTGTTTGC
ATAACTTCTGACAAGGTTGATTGCTTTACGTCCATATCCACGACTCATTT
CAATATCAAAAGGATTGATTGATGCTGCATGTACTTTAACAAGTGCTTCA
TCAGGTTTCAAAAAGTGATTAGTAATAGAAGGTGAACTTAACTGATAATT
CAGTAAATCAACTGATGGCGCATACTTATTGATTTGCAATGATTTCATTT
GAGTTGTGTATGAACGTAAAACTTGCGCcgatattttccaatttttacaC
AGAGTACAATtcatttttaatatatttttatcttttgatatgaGTAGCta
ataaaaaagaagagaaattaTTGATTGTTGAACTTGTGCtgatatttttc
atttgttacacaaaat
Run BLAST on NCBI

protein sequence of TCONS_00055085-protein

>TCONS_00055085-protein ID=TCONS_00055085-protein|Name=TCONS_00055085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MNCTLCKNWKISAQVLRSYTTQMKSLQINKYAPSVDLLNYQLSSPSITNH
FLKPDEALVKVHAASINPFDIEMSRGYGRKAINLVRSYANSKEFPLILGR
DFSGVVVKSGRLFKRFKRGDPVYGVRWVTGQGTHAEYVIVNKSEISPKPV
NLTHIEAASLPYVACTTWSALMDSGAVSIMGSRKLNIFIPGGTGGIGSFA
VQLCKAYGHNVTTACAPNGVSILNNIDIYNVLDYTSNTYENDLQNNGPYD
VILDTQNERYVNLYKKVLKESSKSKYVSLRPTLLPDTDSKGMTLGLIDAG
GKYAKSSIEQLSSGKGQYQWGFFKPNGMVLDHIKPLIENGNIKTLVDKVF
PLDDIVNAYKYVEKGHARGKTVIGMVS
Run BLAST on NCBI

transcript from alignment at scaffold_25:32226..33641

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055085 ID=TCONS_00055085|Name=TCONS_00055085|organism=Clytia hemisphaerica|type=transcript|length=1416bp|location=Sequence derived from alignment at scaffold_25:32226..33641 (Clytia hemisphaerica)
attttgtgtaacaaatgaaaaatatcaGCACAAGTTCAACAATCAAtaat
ttctcttcttttttattaGCTACtcatatcaaaagataaaaatatattaa
aaatgaATTGTACTCTGtgtaaaaattggaaaatatcgGCGCAAGTTTTA
CGTTCATACACAACTCAAATGAAATCATTGCAAATCAATAAGTATGCGCC
ATCAGTTGATTTACTGAATTATCAGTTAAGTTCACCTTCTATTACTAATC
ACTTTTTGAAACCTGATGAAGCACTTGTTAAAGTACATGCAGCATCAATC
AATCCTTTTGATATTGAAATGAGTCGTGGATATGGACGTAAAGCAATCAA
CCTTGTCAGAAGTTATGCAAACAGTAAAGAATTCCCACTAATTCTGGGTA
GAGATTTTTCAGGTGTTGTTGTTAAAAGTGGTCGACTTTTTAAAAGATTC
AAGAGAGGTGACCCTGTTTATGGTGTAAGATGGGTAACAGGACAAGGTAC
ACATGCTGAATATGTTATCGTAAACAAATCTGAGATAAGTCCTAAACCTG
TAAACCTAACTCACATTGAGGCTGCTTCATTACCTTATGTGGCATGTACC
ACATGGAGCGCATTGATGGACTCAGGTGCTGTGTCAATAATGGGCTCACG
CAAACTCAATATATTTATACCTGGCGGGACAGGTGGTATTGGATCATTTG
CTGTTCAACTTTGTAAAGCATACGGACACAATGTAACAACAGCTTGTGCA
CCAAATGGTGTATCTATTTTAAACAATATTGACATCTATAATGTTTTAGA
TTATACTAGTAATACATATGAGAATGATTTGCAAAATAATGGCCCCTATG
ATGTTATACTTGACACACAAAATGAACGTTATGTTAATCTAtacaaaaag
gttttaaaagAGAGCTCAAAATCTAAATATGTGTCTTTGAGACCTACTCT
TTTGCCTGATACAGATTCAAAAGGGATGACACTTGGGCTCATAGATGCTG
GTGGAAAATATGCTAAAAGCAGTATTGAACAGCTCAGTAGCGGCAAAGGG
CAGTACCAATGGGGATTTTTCAAGCCTAACGGTATGGTTCTTGATCACAT
CAAACCTCTTATTGAAAATGGTAATATTAAAACCTTAGTGGACAAGGTTT
TTCCATTGGATGATATTGTTAATGCTTATAAATATGTAGAGAAAGGTCAT
GCTAGAGGTAAAACAGTTATCGGTATGGTATCTTGATTTGGATTTGTTAT
TGTTTCTTTGGATTGTTTCTATTTATAAATGATATAGATATTATGAAATG
GGTGAAATAGAAGATATTATATATTATGTGATATGTATAGGATTTGTAGA
ATTTTAGTAATCAGATACTTAAAGCCAGGCATcaattggaaaaaataaat
tcaatgcAACTActtg

Coding sequence (CDS) from alignment at scaffold_25:32226..33641

>TCONS_00055085 ID=TCONS_00055085|Name=TCONS_00055085|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_25:32226..33641 (Clytia hemisphaerica)
atgaATTGTACTCTGtgtaaaaattggaaaatatcgGCGCAAGTTTTACG
TTCATACACAACTCAAATGAAATCATTGCAAATCAATAAGTATGCGCCAT
CAGTTGATTTACTGAATTATCAGTTAAGTTCACCTTCTATTACTAATCAC
TTTTTGAAACCTGATGAAGCACTTGTTAAAGTACATGCAGCATCAATCAA
TCCTTTTGATATTGAAATGAGTCGTGGATATGGACGTAAAGCAATCAACC
TTGTCAGAAGTTATGCAAACAGTAAAGAATTCCCACTAATTCTGGGTAGA
GATTTTTCAGGTGTTGTTGTTAAAAGTGGTCGACTTTTTAAAAGATTCAA
GAGAGGTGACCCTGTTTATGGTGTAAGATGGGTAACAGGACAAGGTACAC
ATGCTGAATATGTTATCGTAAACAAATCTGAGATAAGTCCTAAACCTGTA
AACCTAACTCACATTGAGGCTGCTTCATTACCTTATGTGGCATGTACCAC
ATGGAGCGCATTGATGGACTCAGGTGCTGTGTCAATAATGGGCTCACGCA
AACTCAATATATTTATACCTGGCGGGACAGGTGGTATTGGATCATTTGCT
GTTCAACTTTGTAAAGCATACGGACACAATGTAACAACAGCTTGTGCACC
AAATGGTGTATCTATTTTAAACAATATTGACATCTATAATGTTTTAGATT
ATACTAGTAATACATATGAGAATGATTTGCAAAATAATGGCCCCTATGAT
GTTATACTTGACACACAAAATGAACGTTATGTTAATCTAtacaaaaaggt
tttaaaagAGAGCTCAAAATCTAAATATGTGTCTTTGAGACCTACTCTTT
TGCCTGATACAGATTCAAAAGGGATGACACTTGGGCTCATAGATGCTGGT
GGAAAATATGCTAAAAGCAGTATTGAACAGCTCAGTAGCGGCAAAGGGCA
GTACCAATGGGGATTTTTCAAGCCTAACGGTATGGTTCTTGATCACATCA
AACCTCTTATTGAAAATGGTAATATTAAAACCTTAGTGGACAAGGTTTTT
CCATTGGATGATATTGTTAATGCTTATAAATATGTAGAGAAAGGTCATGC
TAGAGGTAAAACAGTTATCGGTATGGTATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034705XLOC_034705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055085-proteinTCONS_00055085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055085-exon-scaffold_25-1491911889:32226..33641TCONS_00055085-exon-scaffold_25-1491911889:32226..33641Clytia hemisphaericaexon
TCONS_00055085-exon-scaffold_25-1510915933:32226..33641TCONS_00055085-exon-scaffold_25-1510915933:32226..33641Clytia hemisphaericaexon
TCONS_00055085-exon-scaffold_25-1575043694:32226..33641TCONS_00055085-exon-scaffold_25-1575043694:32226..33641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:32226..33641 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.9875	18.631	4.62601	3.19087	14.151	10.0547	5.32836	6.01431	3.26953	4.20325	2.41213	1.91843	2.0135	2.27376	2.38674	3.51065	6.44311	5.99334	0.781144	1.47134	4.17761	3.36843	22.0747	17.6792	3.43986	4.92888	6.08592	3.95725	10.8965	11.5672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020843PKS_ER
IPR013154ADH_N
IPR016040NAD(P)-bd_dom
IPR011032GroES-like
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00055085 vs. Swiss-Prot (Human)
Match: RT4I1 (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 4.970e-74
Identity = 138/371 (37.20%), Postives = 210/371 (56.60%), Query Frame = -1 
Query:  187 KISAQVLRSYTTQMKSLQINKYAPSVDLLNYQLSSPSITNHFLKPDEALVKVHAASINPFDIEMSRGYGRKAINLVRSYANSK----EFPLILGRDFSGVVVKSGRLFKRFKRGDPVYGVRWVTGQGTHAEYVIVNKSEISPKPVNLTHIEAASLPYVACTTWSALMDSGAVSIMGSRKLNIFIPGGTGGIGSFAVQLCKAYGHNVTTACAPNGVSILNNIDIYNVLDYTSNTYENDLQNNGPYDVILDTQNERYVNLYKKVLKESSKSKYVSLRPTLLPDTDSKGMTLGLIDAGGKYAKSSIEQLSSGKGQYQWGFFKPNGMVLDHIKPLIENGNIKTLVDKVFPLDDIVNAYKYVEKGHARGKTVIGMV 1287
            +IS    RS  T M +  I+KY  + ++L +  +      H+  P+E +VKVHAAS+NP D+ M  GYG  A+N+ R   + K    EFPL LGRD SGVV++ G   K FK GD V+       QGT +E+V+V+ +E+S KP +LTH +AASLPYVA T WSA+   G ++        + I G +GG+G+FA+Q+ KA+  +VT  C+ +   ++  +   +V+DY S + E  L++  P+D ILD             LK+ S + YV+L    L + D  G+  G++  G      +++    G   Y+W FF  +G  LD I  L++ G I+ ++++ FP   +  A+  VE+GHARGKTVI +V
Sbjct:   32 RISTTSPRS--TVMPAWVIDKYGKN-EVLRFTQNMMMPIIHY--PNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGV-HYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINVV 396
The following BLAST results are available for this feature:
BLAST of TCONS_00055085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT4I14.970e-7437.20Reticulon-4-interacting protein 1, mitochondrial O... [more]
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