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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055090 ID=TCONS_00055090|Name=TCONS_00055090|organism=Clytia hemisphaerica|type=transcript|length=284bp
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTTGATGAGGCGCTTTTGTTGTCAACCACTCC Run BLAST on NCBI transcript from alignment at scaffold_250:31279..32552+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055090 ID=TCONS_00055090|Name=TCONS_00055090|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at scaffold_250:31279..32552+ (Clytia hemisphaerica)
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTATACTATacttttcaagtcaaatttgaaacgtcaaaaaaactaGTC
GGCAAAAATGACGAAAAGAAAGTCGTTTGCTCGGCGAAATCTTTTACCGA
AGGGGGTAGCAGCGAGAAGTGGATTATCGGATCAAACTATACTTATACAg
tatatattttcgaaaatttagcccaaaacccttggggaTAGGCATTTCTA
AGGGTTGGAGGGTGCCAAAAAAGGGGGGTCATTTAATAAGGGGGAATCAG
ACATCTTTCCGCACTATAATTCCTCTATGTCTACTATCTTATTATTCTAC
TCCATAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGG
GAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAAT
CATCAATTTTATTATTCTACCCCATAGATGCCGATGAGGCGCTTTTGTTG
TCAACCACTCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAA
AATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTT
TATGAACATTTGAATTCCAATCATCAATTTTATTATTCTACTCCATAGAT
GCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGGGAAAGAAGC
AAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTG
GGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATT
TTATTATTCTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCAC
TCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGT
TAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACA
TTTGAATTCCAATCATCAATCTTATTATTCTACTCCATAGATGCCGATGA
GGCGCTTTTGTTGTCAACCACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055090-exon-scaffold_250-1491911889:31279..31530 | TCONS_00055090-exon-scaffold_250-1491911889:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1510915933:31279..31530 | TCONS_00055090-exon-scaffold_250-1510915933:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1575043694:31279..31530 | TCONS_00055090-exon-scaffold_250-1575043694:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1491911889:31838..31846 | TCONS_00055090-exon-scaffold_250-1491911889:31838..31846 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1510915933:31838..31846 | TCONS_00055090-exon-scaffold_250-1510915933:31838..31846 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1575043694:31838..31846 | TCONS_00055090-exon-scaffold_250-1575043694:31838..31846 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1491911889:32530..32552 | TCONS_00055090-exon-scaffold_250-1491911889:32530..32552 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1510915933:32530..32552 | TCONS_00055090-exon-scaffold_250-1510915933:32530..32552 | Clytia hemisphaerica | exon |
| TCONS_00055090-exon-scaffold_250-1575043694:32530..32552 | TCONS_00055090-exon-scaffold_250-1575043694:32530..32552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:31279..32552 + |
Blast
The following BLAST results are available for this feature:
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