TCONS_00055091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055091
Unique NameTCONS_00055091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055091 ID=TCONS_00055091|Name=TCONS_00055091|organism=Clytia hemisphaerica|type=transcript|length=284bp
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTTGATGAGGCGCTTTTGTTGTCAACCACTCC
Run BLAST on NCBI

transcript from alignment at scaffold_250:31279..32723+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055091 ID=TCONS_00055091|Name=TCONS_00055091|organism=Clytia hemisphaerica|type=transcript|length=1445bp|location=Sequence derived from alignment at scaffold_250:31279..32723+ (Clytia hemisphaerica)
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTATACTATacttttcaagtcaaatttgaaacgtcaaaaaaactaGTC
GGCAAAAATGACGAAAAGAAAGTCGTTTGCTCGGCGAAATCTTTTACCGA
AGGGGGTAGCAGCGAGAAGTGGATTATCGGATCAAACTATACTTATACAg
tatatattttcgaaaatttagcccaaaacccttggggaTAGGCATTTCTA
AGGGTTGGAGGGTGCCAAAAAAGGGGGGTCATTTAATAAGGGGGAATCAG
ACATCTTTCCGCACTATAATTCCTCTATGTCTACTATCTTATTATTCTAC
TCCATAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGG
GAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAAT
CATCAATTTTATTATTCTACCCCATAGATGCCGATGAGGCGCTTTTGTTG
TCAACCACTCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAA
AATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTT
TATGAACATTTGAATTCCAATCATCAATTTTATTATTCTACTCCATAGAT
GCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGGGAAAGAAGC
AAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTG
GGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATT
TTATTATTCTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCAC
TCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGT
TAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACA
TTTGAATTCCAATCATCAATCTTATTATTCTACTCCATAGATGCCGATGA
GGCGCTTTTGTTGTCAACCACTCCACCAGGgggaaaagaagcaaaaaacA
AAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTA
ACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATCTTATTATT
CTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034707XLOC_034707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055091-exon-scaffold_250-1491911889:31279..31530TCONS_00055091-exon-scaffold_250-1491911889:31279..31530Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1510915933:31279..31530TCONS_00055091-exon-scaffold_250-1510915933:31279..31530Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1575043694:31279..31530TCONS_00055091-exon-scaffold_250-1575043694:31279..31530Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1491911889:31838..31846TCONS_00055091-exon-scaffold_250-1491911889:31838..31846Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1510915933:31838..31846TCONS_00055091-exon-scaffold_250-1510915933:31838..31846Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1575043694:31838..31846TCONS_00055091-exon-scaffold_250-1575043694:31838..31846Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1491911889:32701..32723TCONS_00055091-exon-scaffold_250-1491911889:32701..32723Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1510915933:32701..32723TCONS_00055091-exon-scaffold_250-1510915933:32701..32723Clytia hemisphaericaexon
TCONS_00055091-exon-scaffold_250-1575043694:32701..32723TCONS_00055091-exon-scaffold_250-1575043694:32701..32723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:31279..32723 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120392	0	0.169485	0	0	0	0	0	0	0	0	0	0	0	0.592245	0	0	0	0	0	0	0.0458429	0	0.144966	0	0	0	0	0.613294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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