TCONS_00055092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055092
Unique NameTCONS_00055092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055092 ID=TCONS_00055092|Name=TCONS_00055092|organism=Clytia hemisphaerica|type=transcript|length=505bp
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAGG
AAGCAAAAAACGAAGATTATGATCGAGCCGCTCCCCCAGGTGGACGACCA
AATTTCCACCTAGAGTACGTACTAGTATATGATACTAGCAGAACGGATGC
ACACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggcaatTTCA
ATTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTTCGAATC
GGGAA
Run BLAST on NCBI

protein sequence of TCONS_00055092-protein

>TCONS_00055092-protein ID=TCONS_00055092-protein|Name=TCONS_00055092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
LKGEQTRLQMKNNEEKKSYNGVENTTSVLLKKIFTFALIPPFAAFLLVLP
KPGIVWAMSGVGALFVLGVNLLTEAADSSITKEDVDEALLLSTTPPGEKE
AKNEDYDRAAPPGGRPNFHLEYVLVYDTSRTDAHSSHCVFIKSIKDGNFN
CINSWRDIDPAPQVRIG
Run BLAST on NCBI

transcript from alignment at scaffold_250:31279..35739+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055092 ID=TCONS_00055092|Name=TCONS_00055092|organism=Clytia hemisphaerica|type=transcript|length=4461bp|location=Sequence derived from alignment at scaffold_250:31279..35739+ (Clytia hemisphaerica)
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTATACTATacttttcaagtcaaatttgaaacgtcaaaaaaactaGTC
GGCAAAAATGACGAAAAGAAAGTCGTTTGCTCGGCGAAATCTTTTACCGA
AGGGGGTAGCAGCGAGAAGTGGATTATCGGATCAAACTATACTTATACAg
tatatattttcgaaaatttagcccaaaacccttggggaTAGGCATTTCTA
AGGGTTGGAGGGTGCCAAAAAAGGGGGGTCATTTAATAAGGGGGAATCAG
ACATCTTTCCGCACTATAATTCCTCTATGTCTACTATCTTATTATTCTAC
TCCATAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGG
GAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAAT
CATCAATTTTATTATTCTACCCCATAGATGCCGATGAGGCGCTTTTGTTG
TCAACCACTCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAA
AATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTT
TATGAACATTTGAATTCCAATCATCAATTTTATTATTCTACTCCATAGAT
GCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGGGAAAGAAGC
AAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTG
GGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATT
TTATTATTCTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCAC
TCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGT
TAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACA
TTTGAATTCCAATCATCAATCTTATTATTCTACTCCATAGATGCCGATGA
GGCGCTTTTGTTGTCAACCACTCCACCAGGgggaaaagaagcaaaaaacA
AAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTA
ACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATCTTATTATT
CTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAG
GgggaaaagaagcaaaaaacAAAGGTTTGTATAAAATTGCGTTAAAATTT
GTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACATTTGAATT
CCAATCATCAATCTTATTATTCTACTCCATAGATGTTGATGAGGCGCTTT
TGTTGTCAACCACTCCACCAGGGGAAAAGGAAGCAAAAAACGAAGGTTTG
TAAATGCCTTTAACCTGATCTTCagtgtttggaaaaaaatgatatGAAGT
TTATGTGCATTTGAATTCCAAACTATTGCCCACCCAGGAAAATTGAGCTA
AAACTCCCGGGGTGGCTACTAGGGCAAATTGGGTTAAGGGGATAAATAGA
ATGTATAGAAGAGTCcaacgtagggtccatttttcaaacctcagcggagc
acccccgttgatcggcaagggtagtacccctcCGGGCTAAAGCTCAATAT
GCTTAGCTGATTGGATTTTCAGCTTTAAGTTATGCttagttaaaaaaact
tcaaagctTCCTtaattttgattcattttcatttccacTTGTTTCTCAAG
TTCGTTGTTAGTTTTTACATTCACCCGATACCACATTAAAACCTTCTTCG
TGTTCTTCCCTGTTTCATTTATCCCGTTTTCGAAGTTTCAATGACTTTAA
AAGGCTTCAAGATACGCTTaacattatgcttatttttttttgcaaatttc
agTATAAATATGCTTATAATCGTTATGCTTATAAAGCAAAATGTACGTAT
GTATCTGATTATTCTATTCTATAGATTATGATCGAGCCGCTCCCCCAGGT
GGACGACCAAATTTCCGTAGGTGTTTTTCATAAATAATCTTGCACAAATG
TCAATAGGCTTTCTTAAGTACGGTATCAATCCTTTCGTCAAAAGCTTTGC
TAGACTTATCAAAGCCATTTTTTGCCCTTCATTAtttagtcatttttcaa
aaagtggcaTTTTCGGGGGCAAATTGAAACCTATATAGGTGAATAGGTTG
GCTTTCAAAGATTCTAAATTTCTTTGCTGAACATCGCAATTTTTCTTTTG
GGCCAAGATGTATCCCGACGTCACTATTTCCCATGCAGAACCCTAAGCCC
CAAAAATCTGACGAAAAATCAAAGTCGCTACTAAAACCTAAAACCACTTA
TACTATTCGATAACTCTCAAAATTtgatatagaagacttttaaacgaaTA
TAGTCGATTTTTcaacctaactcgagaaaattgtcaaaacgggacttttt
tgtgatttttgacgtcaaatgagtGAAGAATTGACGTTTTTGGTCTTCGG
AGCTAATCTTTTCGAGTTAGGTTGAGAAATGGACTATATTCACATAAAAA
TTCTCTATATCGTTTTTTTAGAGCTATCGAATGGTATAAGTGCGGTTTTA
GGTTTTACCGACTTTGATTTTTCGTCAGATTTTTTAGTGAATAGTGCGAG
TCAATAGTGCGAGTCAATAGTGCTTTACTTGAGGATAACTGAAGTCATGT
TTTTTTTAGCTAGACGTAACGCTCAAGAACATTCAGAGTATCCAGCTTAC
ATTTTAGCGTCCCATAGATCTAAAGAATGAACTCCAAAAGTTTCAGTTTG
CGCCCccaccccaaattttttttaaaaaatggctGTCAGCTTCCTGACTA
TTTACCTCGAGAGTTAACCCTTTGTGCATCTTGGCCAAAAATTTTTACTA
GTTTTTCATagacttaatattttttcatgaaatttgggCAGTGTGACTAA
ATCAAGGATTGACACCTTCTGAcaaaattttatcattagtgATGATTCAt
tgccacctgatgacgtcatcaatttttgacATCTCCAAAAATAGGACCCC
GCCCCTCTAATTCTTTTTCGAgcttcaatattttttgcttaaattttgTG
TGGGAATTCCATTTGACATATGTATACGGGGCACACGGTCAATTTTGCCC
ACCTGTCATAggcgtgtattttacagaccgtcCCAGATTTgccttttttg
cctaaattagtgttaaattttgatatctcaagctattgacttgaaatttt
gaccagtgataGGTATTGATAATAGAAGCTTGCTCTCAAGACTTTAGTGA
GATTGGACCAGTAGTAATGCAGAAGGTGAGCATTTCAGGTAAAATACTGA
CTTGtttgtaaaataccaaccacgcAGGTGGCCgaattgaaattttacac
aTTGTCTCAGATGGTCAAGACCTTtcactggtgaaaatttcaactCAAAA
GTTACTGTAGCTCCTGAGTTCCGGAAAAGGGgggtgtattttacagaccg
gtctgtaaattaccaAATACCACCGTGGAACTGTTTTTTTCCCTATACTC
TGATCTAACTTGGCAAATGGATgcaatttcaacaaaaagtaCCAAGACAA
TCGGATAATTCATTCTAGCAGCTAATTtaacattctggtctgtaaaatac
caactaaACAGGTGACCGACCTGAAAATTTGTAAATCGTCTTCATATTTG
TCAATATCTGtcactggtgaaaatttcaagttcacaGCACTTGTCAATCC
TGAGATCCGAGGGGGAGGGGCTAACATGCCCCCCAAGATGCTCCACATat
aaaaaaataggaagatgcaCGAAGGGTTAACTTACTAGCCAAGATGGATA
GAAAAAGATACtaggaagatcgattaaaagATGGCAGAGGATAGAGCTTA
TGAACTCCACTTGACCGGATTTTATTCATCTTGATAACATCAGCAGTTTT
TTATGGGATGCAGTTTTTGCAAAGCGCCATCTAGAAACTTCTGAAAGGGC
GCCTAAAAAGCATTATGAGAGGGTGTTACGTCATATATACATCGAtttcc
ttttattttatagACCTAGAGTACGTACTAGTATATGATACTAGCAGAAC
GGATGCACACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggca
atTTCAATTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTT
CGAATCGGGAA

Coding sequence (CDS) from alignment at scaffold_250:31279..35739+

>TCONS_00055092 ID=TCONS_00055092|Name=TCONS_00055092|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_250:31279..35739+ (Clytia hemisphaerica)
CTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAAAA
AAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAATCT
TTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGCCA
AAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTGCT
GGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGAAG
ATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAGGAA
GCAAAAAACGAAGATTATGATCGAGCCGCTCCCCCAGGTGGACGACCAAA
TTTCCACCTAGAGTACGTACTAGTATATGATACTAGCAGAACGGATGCAC
ACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggcaatTTCAAT
TGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTTCGAATCGG
GCTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAAA
AAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAATC
TTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGCC
AAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTGC
TGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGAA
GATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAGGA
AGCAAAAAACGAAGATTATGATCGAGCCGCTCCCCCAGGTGGACGACCAA
ATTTCCACCTAGAGTACGTACTAGTATATGATACTAGCAGAACGGATGCA
CACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggcaatTTCAA
TTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTTCGAATCG
GGCTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAGG
AAGCAAAAAACGAAGATTATGATCGAGCCGCTCCCCCAGGTGGACGACCA
AATTTCCACCTAGAGTACGTACTAGTATATGATACTAGCAGAACGGATGC
ACACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggcaatTTCA
ATTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTTCGAATC
GGGCTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAA
AAAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAA
TCTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTG
CCAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGT
GCTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAG
AAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAG
GAAGCAAAAAACGAAGATTATGATCGAGCCGCTCCCCCAGGTGGACGACC
AAATTTCCACCTAGAGTACGTACTAGTATATGATACTAGCAGAACGGATG
CACACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggcaatTTC
AATTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTTCGAAT
CGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034707XLOC_034707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055092-exon-scaffold_250-1491911889:31279..31530TCONS_00055092-exon-scaffold_250-1491911889:31279..31530Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1510915933:31279..31530TCONS_00055092-exon-scaffold_250-1510915933:31279..31530Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1575043694:31279..31530TCONS_00055092-exon-scaffold_250-1575043694:31279..31530Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1491911889:32861..32923TCONS_00055092-exon-scaffold_250-1491911889:32861..32923Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1510915933:32861..32923TCONS_00055092-exon-scaffold_250-1510915933:32861..32923Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1575043694:32861..32923TCONS_00055092-exon-scaffold_250-1575043694:32861..32923Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1491911889:33503..33544TCONS_00055092-exon-scaffold_250-1491911889:33503..33544Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1510915933:33503..33544TCONS_00055092-exon-scaffold_250-1510915933:33503..33544Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1575043694:33503..33544TCONS_00055092-exon-scaffold_250-1575043694:33503..33544Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1491911889:35592..35739TCONS_00055092-exon-scaffold_250-1491911889:35592..35739Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1510915933:35592..35739TCONS_00055092-exon-scaffold_250-1510915933:35592..35739Clytia hemisphaericaexon
TCONS_00055092-exon-scaffold_250-1575043694:35592..35739TCONS_00055092-exon-scaffold_250-1575043694:35592..35739Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055092-proteinTCONS_00055092-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:31279..35739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07872	0.313873	0.593383	0.713088	7.74216	7.97689	32.388	29.2586	25.6554	32.8899	43.976	24.4719	47.5569	39.5604	52.657	48.6938	39.227	49.0495	45.4484	44.3402	33.0899	35.1352	19.5407	22.8357	45.4937	49.6676	31.6932	32.7317	27.3399	29.6215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top