|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055093 ID=TCONS_00055093|Name=TCONS_00055093|organism=Clytia hemisphaerica|type=transcript|length=356bp
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGAAAAGG
AAGCAAAAAACGAAGATCTTGATGAGGCGCTTTTGCTGTCAACCACTCCA
CCAGgg Run BLAST on NCBI transcript from alignment at scaffold_250:31279..40810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055093 ID=TCONS_00055093|Name=TCONS_00055093|organism=Clytia hemisphaerica|type=transcript|length=9532bp|location=Sequence derived from alignment at scaffold_250:31279..40810+ (Clytia hemisphaerica)
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTATACTATacttttcaagtcaaatttgaaacgtcaaaaaaactaGTC
GGCAAAAATGACGAAAAGAAAGTCGTTTGCTCGGCGAAATCTTTTACCGA
AGGGGGTAGCAGCGAGAAGTGGATTATCGGATCAAACTATACTTATACAg
tatatattttcgaaaatttagcccaaaacccttggggaTAGGCATTTCTA
AGGGTTGGAGGGTGCCAAAAAAGGGGGGTCATTTAATAAGGGGGAATCAG
ACATCTTTCCGCACTATAATTCCTCTATGTCTACTATCTTATTATTCTAC
TCCATAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGG
GAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAAT
CATCAATTTTATTATTCTACCCCATAGATGCCGATGAGGCGCTTTTGTTG
TCAACCACTCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAA
AATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTT
TATGAACATTTGAATTCCAATCATCAATTTTATTATTCTACTCCATAGAT
GCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGGGAAAGAAGC
AAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTG
GGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATT
TTATTATTCTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCAC
TCCACCAGGGGGGAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGT
TAAAATTTGTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACA
TTTGAATTCCAATCATCAATCTTATTATTCTACTCCATAGATGCCGATGA
GGCGCTTTTGTTGTCAACCACTCCACCAGGgggaaaagaagcaaaaaacA
AAGGTTTGTATAAAATTGCGTTAAAATTTGTCTTCAGTTTTGGGAGGGTA
ACGATATGAAGTTTATGAACATTTGAATTCCAATCATCAATCTTATTATT
CTACTCCATAGATGCCGATGAGGCGCTTTTGTTGTCAACCACTCCACCAG
GgggaaaagaagcaaaaaacAAAGGTTTGTATAAAATTGCGTTAAAATTT
GTCTTCAGTTTTGGGAGGGTAACGATATGAAGTTTATGAACATTTGAATT
CCAATCATCAATCTTATTATTCTACTCCATAGATGTTGATGAGGCGCTTT
TGTTGTCAACCACTCCACCAGGGGAAAAGGAAGCAAAAAACGAAGGTTTG
TAAATGCCTTTAACCTGATCTTCagtgtttggaaaaaaatgatatGAAGT
TTATGTGCATTTGAATTCCAAACTATTGCCCACCCAGGAAAATTGAGCTA
AAACTCCCGGGGTGGCTACTAGGGCAAATTGGGTTAAGGGGATAAATAGA
ATGTATAGAAGAGTCcaacgtagggtccatttttcaaacctcagcggagc
acccccgttgatcggcaagggtagtacccctcCGGGCTAAAGCTCAATAT
GCTTAGCTGATTGGATTTTCAGCTTTAAGTTATGCttagttaaaaaaact
tcaaagctTCCTtaattttgattcattttcatttccacTTGTTTCTCAAG
TTCGTTGTTAGTTTTTACATTCACCCGATACCACATTAAAACCTTCTTCG
TGTTCTTCCCTGTTTCATTTATCCCGTTTTCGAAGTTTCAATGACTTTAA
AAGGCTTCAAGATACGCTTaacattatgcttatttttttttgcaaatttc
agTATAAATATGCTTATAATCGTTATGCTTATAAAGCAAAATGTACGTAT
GTATCTGATTATTCTATTCTATAGATTATGATCGAGCCGCTCCCCCAGGT
GGACGACCAAATTTCCGTAGGTGTTTTTCATAAATAATCTTGCACAAATG
TCAATAGGCTTTCTTAAGTACGGTATCAATCCTTTCGTCAAAAGCTTTGC
TAGACTTATCAAAGCCATTTTTTGCCCTTCATTAtttagtcatttttcaa
aaagtggcaTTTTCGGGGGCAAATTGAAACCTATATAGGTGAATAGGTTG
GCTTTCAAAGATTCTAAATTTCTTTGCTGAACATCGCAATTTTTCTTTTG
GGCCAAGATGTATCCCGACGTCACTATTTCCCATGCAGAACCCTAAGCCC
CAAAAATCTGACGAAAAATCAAAGTCGCTACTAAAACCTAAAACCACTTA
TACTATTCGATAACTCTCAAAATTtgatatagaagacttttaaacgaaTA
TAGTCGATTTTTcaacctaactcgagaaaattgtcaaaacgggacttttt
tgtgatttttgacgtcaaatgagtGAAGAATTGACGTTTTTGGTCTTCGG
AGCTAATCTTTTCGAGTTAGGTTGAGAAATGGACTATATTCACATAAAAA
TTCTCTATATCGTTTTTTTAGAGCTATCGAATGGTATAAGTGCGGTTTTA
GGTTTTACCGACTTTGATTTTTCGTCAGATTTTTTAGTGAATAGTGCGAG
TCAATAGTGCGAGTCAATAGTGCTTTACTTGAGGATAACTGAAGTCATGT
TTTTTTTAGCTAGACGTAACGCTCAAGAACATTCAGAGTATCCAGCTTAC
ATTTTAGCGTCCCATAGATCTAAAGAATGAACTCCAAAAGTTTCAGTTTG
CGCCCccaccccaaattttttttaaaaaatggctGTCAGCTTCCTGACTA
TTTACCTCGAGAGTTAACCCTTTGTGCATCTTGGCCAAAAATTTTTACTA
GTTTTTCATagacttaatattttttcatgaaatttgggCAGTGTGACTAA
ATCAAGGATTGACACCTTCTGAcaaaattttatcattagtgATGATTCAt
tgccacctgatgacgtcatcaatttttgacATCTCCAAAAATAGGACCCC
GCCCCTCTAATTCTTTTTCGAgcttcaatattttttgcttaaattttgTG
TGGGAATTCCATTTGACATATGTATACGGGGCACACGGTCAATTTTGCCC
ACCTGTCATAggcgtgtattttacagaccgtcCCAGATTTgccttttttg
cctaaattagtgttaaattttgatatctcaagctattgacttgaaatttt
gaccagtgataGGTATTGATAATAGAAGCTTGCTCTCAAGACTTTAGTGA
GATTGGACCAGTAGTAATGCAGAAGGTGAGCATTTCAGGTAAAATACTGA
CTTGtttgtaaaataccaaccacgcAGGTGGCCgaattgaaattttacac
aTTGTCTCAGATGGTCAAGACCTTtcactggtgaaaatttcaactCAAAA
GTTACTGTAGCTCCTGAGTTCCGGAAAAGGGgggtgtattttacagaccg
gtctgtaaattaccaAATACCACCGTGGAACTGTTTTTTTCCCTATACTC
TGATCTAACTTGGCAAATGGATgcaatttcaacaaaaagtaCCAAGACAA
TCGGATAATTCATTCTAGCAGCTAATTtaacattctggtctgtaaaatac
caactaaACAGGTGACCGACCTGAAAATTTGTAAATCGTCTTCATATTTG
TCAATATCTGtcactggtgaaaatttcaagttcacaGCACTTGTCAATCC
TGAGATCCGAGGGGGAGGGGCTAACATGCCCCCCAAGATGCTCCACATat
aaaaaaataggaagatgcaCGAAGGGTTAACTTACTAGCCAAGATGGATA
GAAAAAGATACtaggaagatcgattaaaagATGGCAGAGGATAGAGCTTA
TGAACTCCACTTGACCGGATTTTATTCATCTTGATAACATCAGCAGTTTT
TTATGGGATGCAGTTTTTGCAAAGCGCCATCTAGAAACTTCTGAAAGGGC
GCCTAAAAAGCATTATGAGAGGGTGTTACGTCATATATACATCGAtttcc
ttttattttatagACCTAGAGTACGTACTAGTATATGATACTAGCAGAAC
GGATGCACACAGTTCCCATTGCGTTTTCATAAaatcgatcaaagatggca
atTTCAATTGTATAAATAGTTGGAGAGATATAGATCCCGCACCTCAAGTT
CGAATCGGGAAGGAAAAAAACAGACTTTGGAGAGTTAATGTGGAGTATAA
AGATCCAGAAATTAAAGGTAAACTGAACGAGATGAATGTTCCCTATAAAA
ATGcatttacacattttttttcttctcaacTGTAAAGCAGAATCAAAGTG
ACTGAATTCCATAAAAGAGGAACATtaaatcaatttcattttatcttGCA
GTGACAAGTGGATGTTCACAGAAAAGAGAGAATCTTTCAGGTATTGGCTT
CGAGcaacttttcttcaaatttactTGGGGTCTACAATTCAAAACTGTct
ggaaatatattttgaaagtgGGGTTATTCCCCGAATAACTTGGAAAAGGG
ATCCCGACAGATCCCCAGGGATCAGGAAAATTTCTTAGAGCAGAGGAGTA
GATTTGAATACTGTAGCCcagtaaaaagattttcaaaatctcatctCTTC
TCACGTCtgataatttattattttagagAGTGAGATTATGCAAAAGTTGT
CCGAATCCGTTGCTCCAAGCTCAAGGTATGTGAAAATATGTGACGCTTTT
CCTGTTAGGGTTGTGTTTACCTGGGTTCATTTATGGGCTGTGCTTCATCC
CTTCTCACCGTTTTTGCCATCTACCAAACTGTACGGTCAAAATATAAGGT
AATGGGCATCCTTTGAAATTTCTGCTGCGGTACTCTAAAACTCTCTGact
tttcattattttcccgAATAGGTGGGTTCCAACGGGTCATAGAAGAGATG
GTTTCTCTAGCGTCTAAAAATCTTCCAACATCGTTACAGCTTCAAAGTTA
CAAAGatttatttcagtttttttaaagaatctaagtaatcttcaaaaaat
tttacgtGCTAATGTCTTTTGTCTCACTAATTTTAGGTTCAAGTAAAATT
CATTCTTAAACCTCTGGGCAAATTGGAACATTTGAAACACCAAAGTTATG
AATTAATAAAAGTAAAGTCTCATCATTTTTTCCCTAGAATTGATGCCAAA
TCAATAAATAAAGATGAAGCTGAACTCACTCTTAAGGAAAATAATATTGA
TCGTATAACCCACCTGTATGTGATCGACGATGATGGTGTCGAAGACGTTT
TCAGTAATGGTTTTCGAATAAAGAACTCCCAGGAAGAAGGTTGTATTACC
GTCATTCTAAAAAACATTGATAGAAAAAAGAAGTTCAAAGTTGCTGTATG
TGGTATCGTGCGGGATGGAgacaatgaaaaagaaatttcattgACTTGTG
ACAAAGAAATTGAACCAAATCAAGgtaattttgaagtcaatctgaTTTCA
TTCCTTCCtcgtttttgttttattgaccAAAATGAATGAATTTTGTCGAT
tagcgaaattaaattccatcaaAAAGACGAAATTTCACGAATGACCTGAA
GCTCCAAGGGGAATTGGGatttacttcgaataaccggTGTAGCGGATTAT
TTTAACTCCCTGTAAATGTTGAACCCCCCCAGTTAAAAAAACTAGGAAAT
AATGACTCCCCTAGAGTAgaaatttcctaggaaatacTGACTCccttagt
aaataatgactcccGTAAAAGCTGAGGGAGTCAAGATAGTCAAGACTAGT
TTATCATGACCCCCCTCCCCAAAGTAGTCAAGAACTGAAGTCATTCCACT
GTCTTTTTATTtatatctaactttcatcacaTTGTGATTACTGTATTATA
TTTCTTCTAAAAAATCATTGTGACAAGCGCATTCTCTCGTTGatctcggg
taaattaatgcgtgtccaaattttcgtcaaTTTCTCGGAGGCAATTCCAC
CCCTCCTAGAATAACAAAtcatacctttaaagaagcgcattacgatgtag
aacatgaaaatcggcgttacttaaatttaggttttgccaattttgcgaaa
aaccgcaaaaacaaaaaaatgctgacgtcagcaaaatttattttttaaat
aactccagtttggctaatggtataaacatgaaatttggaccaaagttgca
aaTCATTAACAAAAACACTTTTACATAAtcctttttttcagattttgccg
acgtcagcagaaatcagcaaaatacgaaaatttgcaataaagtgctgaca
tcagcaaaatttcaaaaaaaaatttcaaaatgatccttttagtgatgtgc
aactttggtccaaatttcatgttcataccattagtcaaactggagttatt
taaaaaacaagttttgctgacgtcagcattttttggtttttgcgattttt
cgcaaaattggcaaaacctaaatttaagtaacaccgattttcgtgttcta
catcgtaatgcgcttctttaaaggtataatttattatgctaggaggggtg
gaATTGCCTccaaaaaattacgaaaatttggacacgcattaatttacccg
agatTTCTATTGTCCccgtttttcagattttaaaaccTATTGAGAATTGC
TTTAAGATGCTAAACTTTGCTAATTCGTTACTTCTCTCGTTCAAGGCtat
gaaataagaattttttgcagAGCTGATTTTCGTCGTAGACACCCACCTTT
TGccgaaattttttcatttttcaagggactttgaagaattttcagAATGT
ATGGTGTTTTCACGTAATTTTTGGTAGACACGAAGTTTAAACATTTATTC
TTCATCTGGCTTCTCGTCAGTATTTTGTAAAATGATCTTACAAAGAGGGA
AGTATACAGCAggtcttaagggctctgaccatagtcatcATATTTGTCAT
gtataaaatgtgtttttctgACTAATCTACGATGCAAAGCCATCACacgt
tatacattttctgttaggcaaactattcctgaatctaaaaaagtaaaaaa
ttgatgaagaagaaaatgaaaacagttgcttttgatcaatttttcatccc
aatttctCATACAAAAAGATAGCCttgatatccagaccgtaaactctttc
accgtctagtttttttttggtattttgtctctggtttacggtctggtcca
agtaactcgtctgcagggatatctgtccctgcatattgTAGACTGAGCTA
ACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAAGACTGTATA
TGGTTTCGTACCATCGATTAACTTATATTCTCAATTTCAACTTATAATAA
TTTGACAGCGTTTAGTTTACATGAAATGTCTTACAAAATAGGTTATACTC
TATTCGTGTCTCTTTCAATCTCCGTCTTTCATCATCTAAGTTGCAGCTTT
TATAGCTGTCAACGGAATGTTAATGGAATGTCGTTAGTTTTAAATTAAGT
AACAGATATTGGCCTTGGGCCGTATGAATCTCATTTGTATGTTTGTTGCG
GTTTGATCTTCGATCGTTATGTAAGGTATAATTTCAGCATGTTTCAGCAT
TTGCGTAAGTTTTAATCATCGATCGTTATGAGATATTGGTCTTGGTTGAA
CCACTTTCTGATGGGGTGGCCAGCTGGCTTTAAGCTCCAGCTGACAatat
atgcgagtgtctctaattggtcagtacgcgctcagtcactgagcagaatt
ttcgcggggtttgtgatatttttcgatgcgcgtgcataatttatggaaaa
agctgaccttgcaaaaaaagataaacaaatgaaaatgaaaacgcaggttc
atttctaaacaaaatggccgctggaaaagagcctttataaatgtggctga
tgttttgatgtagcttaaagtagttttgaaagtttttttgagtttgtaaa
agaggttttttagtaagttaattatgtgtgtcttcctgggtttacaaagt
tttgatagtctgtcaacaagggttcactcacagactGTGCCATTCAAACT
GTACCATACtgttttagttgcaccagactctaaaattttagaaactttgt
atgttgaggtaagagtgtttttttctaaaattttgagtctggatacccag
gctaacaAAAAGAGTCATCacttttgatacatcaatttagaaaaattttc
tgaaaaaatttagatagttcaatcttttgcagacagttaaaaaaaaattc
gaaacaaaaaggttaattacttaaaactaagcattttttgtaaaataaaa
attataacaatttattaacgtctttttaaggtCTGTAGCGTCATTTTTGT
GATTAAATTGCTAAATGCTCTTGATAGAATGAATTCAAAGACaatatagt
agagggcattttgtaaaatcgctcgactgttttgttagaagcacttgtta
tacatttttggaaagctaaggggtagcgcaatcgaaattactatgtttcc
aattttttttcggacactttggtgtgattttcggacaaatatgacggtct
caggcaaaaatcatagggttaaaaattaatgaaaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcaaaa
actggacaaaatagctgtttctggctgaaaaacacggttttcaagggtta
atatctcgagttaggtaggTAGGTTTCAAGAAACTTAAAACAAAAGTTAT
ATCTTCAAATCTCGTAAACATtttttcgactatggtcagagcccttaagt
ataAAAATTTTGAGCCAAATCTAAAAATTCTTGAAGGAAATACTGCCCTC
AGGTGGAGTATTTCTTTTACGAGGGTCTGTAGAGTTAGCCCTGAATAGcc
aaataaatttcaaataattttgtcataGATATTAAAGGGGAgtcatttta
attcaatttgtcTCCAGTTTTGGGAGGGTAATGATATGAAGTTTATGAAC
ATTTGAATTCCAATCTTCAATCTTATTATTCTACCCCATAGATCTTGATG
AGGCGCTTTTGCTGTCAACCACTCCACCAGgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055093-exon-scaffold_250-1491911889:31279..31530 | TCONS_00055093-exon-scaffold_250-1491911889:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1510915933:31279..31530 | TCONS_00055093-exon-scaffold_250-1510915933:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1575043694:31279..31530 | TCONS_00055093-exon-scaffold_250-1575043694:31279..31530 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1491911889:32861..32923 | TCONS_00055093-exon-scaffold_250-1491911889:32861..32923 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1510915933:32861..32923 | TCONS_00055093-exon-scaffold_250-1510915933:32861..32923 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1575043694:32861..32923 | TCONS_00055093-exon-scaffold_250-1575043694:32861..32923 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1491911889:40770..40810 | TCONS_00055093-exon-scaffold_250-1491911889:40770..40810 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1510915933:40770..40810 | TCONS_00055093-exon-scaffold_250-1510915933:40770..40810 | Clytia hemisphaerica | exon |
| TCONS_00055093-exon-scaffold_250-1575043694:40770..40810 | TCONS_00055093-exon-scaffold_250-1575043694:40770..40810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:31279..40810 + |
Blast
The following BLAST results are available for this feature:
|
