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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055095 ID=TCONS_00055095|Name=TCONS_00055095|organism=Clytia hemisphaerica|type=transcript|length=386bp
ttttagagAGTGAGATTATGCAAAAGTTGTCCGAATCCGTTGCTCCAAGC
TCAAGAATTGATGCCAAATCAATAAATAAAGATGAAGCTGAACTCACTCT
TAAGGAAAATAATATTGATCGTATAACCCACCTGTATGTGATCGACGATG
ATGGTGTCGAAGACGTTTTCAGTAATGGTTTTCGAATAAAGAACTCCCAG
GAAGAAGGTTGTATTACCGTCATTCTAAAAAACATTGATAGAAAAAAGAA
GTTCAAAGTTGCTGTATGTGGTATCGTGCGGGATGGAgacaatgaaaaag
aaatttcattgACTTGTGACAAAGAAATTGAACCAAATCAAGATGTTAAT
GAGGCGCTTTTGTTGTCAATCACTCCACCAGGGGAA Run BLAST on NCBI transcript from alignment at scaffold_250:36199..40984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055095 ID=TCONS_00055095|Name=TCONS_00055095|organism=Clytia hemisphaerica|type=transcript|length=4786bp|location=Sequence derived from alignment at scaffold_250:36199..40984+ (Clytia hemisphaerica)
ttttagagAGTGAGATTATGCAAAAGTTGTCCGAATCCGTTGCTCCAAGC
TCAAGGTATGTGAAAATATGTGACGCTTTTCCTGTTAGGGTTGTGTTTAC
CTGGGTTCATTTATGGGCTGTGCTTCATCCCTTCTCACCGTTTTTGCCAT
CTACCAAACTGTACGGTCAAAATATAAGGTAATGGGCATCCTTTGAAATT
TCTGCTGCGGTACTCTAAAACTCTCTGacttttcattattttcccgAATA
GGTGGGTTCCAACGGGTCATAGAAGAGATGGTTTCTCTAGCGTCTAAAAA
TCTTCCAACATCGTTACAGCTTCAAAGTTACAAAGatttatttcagtttt
tttaaagaatctaagtaatcttcaaaaaattttacgtGCTAATGTCTTTT
GTCTCACTAATTTTAGGTTCAAGTAAAATTCATTCTTAAACCTCTGGGCA
AATTGGAACATTTGAAACACCAAAGTTATGAATTAATAAAAGTAAAGTCT
CATCATTTTTTCCCTAGAATTGATGCCAAATCAATAAATAAAGATGAAGC
TGAACTCACTCTTAAGGAAAATAATATTGATCGTATAACCCACCTGTATG
TGATCGACGATGATGGTGTCGAAGACGTTTTCAGTAATGGTTTTCGAATA
AAGAACTCCCAGGAAGAAGGTTGTATTACCGTCATTCTAAAAAACATTGA
TAGAAAAAAGAAGTTCAAAGTTGCTGTATGTGGTATCGTGCGGGATGGAg
acaatgaaaaagaaatttcattgACTTGTGACAAAGAAATTGAACCAAAT
CAAGgtaattttgaagtcaatctgaTTTCATTCCTTCCtcgtttttgttt
tattgaccAAAATGAATGAATTTTGTCGATtagcgaaattaaattccatc
aaAAAGACGAAATTTCACGAATGACCTGAAGCTCCAAGGGGAATTGGGat
ttacttcgaataaccggTGTAGCGGATTATTTTAACTCCCTGTAAATGTT
GAACCCCCCCAGTTAAAAAAACTAGGAAATAATGACTCCCCTAGAGTAga
aatttcctaggaaatacTGACTCccttagtaaataatgactcccGTAAAA
GCTGAGGGAGTCAAGATAGTCAAGACTAGTTTATCATGACCCCCCTCCCC
AAAGTAGTCAAGAACTGAAGTCATTCCACTGTCTTTTTATTtatatctaa
ctttcatcacaTTGTGATTACTGTATTATATTTCTTCTAAAAAATCATTG
TGACAAGCGCATTCTCTCGTTGatctcgggtaaattaatgcgtgtccaaa
ttttcgtcaaTTTCTCGGAGGCAATTCCACCCCTCCTAGAATAACAAAtc
atacctttaaagaagcgcattacgatgtagaacatgaaaatcggcgttac
ttaaatttaggttttgccaattttgcgaaaaaccgcaaaaacaaaaaaat
gctgacgtcagcaaaatttattttttaaataactccagtttggctaatgg
tataaacatgaaatttggaccaaagttgcaaaTCATTAACAAAAACACTT
TTACATAAtcctttttttcagattttgccgacgtcagcagaaatcagcaa
aatacgaaaatttgcaataaagtgctgacatcagcaaaatttcaaaaaaa
aatttcaaaatgatccttttagtgatgtgcaactttggtccaaatttcat
gttcataccattagtcaaactggagttatttaaaaaacaagttttgctga
cgtcagcattttttggtttttgcgatttttcgcaaaattggcaaaaccta
aatttaagtaacaccgattttcgtgttctacatcgtaatgcgcttcttta
aaggtataatttattatgctaggaggggtggaATTGCCTccaaaaaatta
cgaaaatttggacacgcattaatttacccgagatTTCTATTGTCCccgtt
tttcagattttaaaaccTATTGAGAATTGCTTTAAGATGCTAAACTTTGC
TAATTCGTTACTTCTCTCGTTCAAGGCtatgaaataagaattttttgcag
AGCTGATTTTCGTCGTAGACACCCACCTTTTGccgaaattttttcatttt
tcaagggactttgaagaattttcagAATGTATGGTGTTTTCACGTAATTT
TTGGTAGACACGAAGTTTAAACATTTATTCTTCATCTGGCTTCTCGTCAG
TATTTTGTAAAATGATCTTACAAAGAGGGAAGTATACAGCAggtcttaag
ggctctgaccatagtcatcATATTTGTCATgtataaaatgtgtttttctg
ACTAATCTACGATGCAAAGCCATCACacgttatacattttctgttaggca
aactattcctgaatctaaaaaagtaaaaaattgatgaagaagaaaatgaa
aacagttgcttttgatcaatttttcatcccaatttctCATACAAAAAGAT
AGCCttgatatccagaccgtaaactctttcaccgtctagtttttttttgg
tattttgtctctggtttacggtctggtccaagtaactcgtctgcagggat
atctgtccctgcatattgTAGACTGAGCTAACAAAGGGGGAGACGGCTCA
GCGGAGAGATCAGTAATTTAAGACTGTATATGGTTTCGTACCATCGATTA
ACTTATATTCTCAATTTCAACTTATAATAATTTGACAGCGTTTAGTTTAC
ATGAAATGTCTTACAAAATAGGTTATACTCTATTCGTGTCTCTTTCAATC
TCCGTCTTTCATCATCTAAGTTGCAGCTTTTATAGCTGTCAACGGAATGT
TAATGGAATGTCGTTAGTTTTAAATTAAGTAACAGATATTGGCCTTGGGC
CGTATGAATCTCATTTGTATGTTTGTTGCGGTTTGATCTTCGATCGTTAT
GTAAGGTATAATTTCAGCATGTTTCAGCATTTGCGTAAGTTTTAATCATC
GATCGTTATGAGATATTGGTCTTGGTTGAACCACTTTCTGATGGGGTGGC
CAGCTGGCTTTAAGCTCCAGCTGACAatatatgcgagtgtctctaattgg
tcagtacgcgctcagtcactgagcagaattttcgcggggtttgtgatatt
tttcgatgcgcgtgcataatttatggaaaaagctgaccttgcaaaaaaag
ataaacaaatgaaaatgaaaacgcaggttcatttctaaacaaaatggccg
ctggaaaagagcctttataaatgtggctgatgttttgatgtagcttaaag
tagttttgaaagtttttttgagtttgtaaaagaggttttttagtaagtta
attatgtgtgtcttcctgggtttacaaagttttgatagtctgtcaacaag
ggttcactcacagactGTGCCATTCAAACTGTACCATACtgttttagttg
caccagactctaaaattttagaaactttgtatgttgaggtaagagtgttt
ttttctaaaattttgagtctggatacccaggctaacaAAAAGAGTCATCa
cttttgatacatcaatttagaaaaattttctgaaaaaatttagatagttc
aatcttttgcagacagttaaaaaaaaattcgaaacaaaaaggttaattac
ttaaaactaagcattttttgtaaaataaaaattataacaatttattaacg
tctttttaaggtCTGTAGCGTCATTTTTGTGATTAAATTGCTAAATGCTC
TTGATAGAATGAATTCAAAGACaatatagtagagggcattttgtaaaatc
gctcgactgttttgttagaagcacttgttatacatttttggaaagctaag
gggtagcgcaatcgaaattactatgtttccaattttttttcggacacttt
ggtgtgattttcggacaaatatgacggtctcaggcaaaaatcatagggtt
aaaaattaatgaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgcaaaaactggacaaaatagctgttt
ctggctgaaaaacacggttttcaagggttaatatctcgagttaggtaggT
AGGTTTCAAGAAACTTAAAACAAAAGTTATATCTTCAAATCTCGTAAACA
TtttttcgactatggtcagagcccttaagtataAAAATTTTGAGCCAAAT
CTAAAAATTCTTGAAGGAAATACTGCCCTCAGGTGGAGTATTTCTTTTAC
GAGGGTCTGTAGAGTTAGCCCTGAATAGccaaataaatttcaaataattt
tgtcataGATATTAAAGGGGAgtcattttaattcaatttgtcTCCAGTTT
TGGGAGGGTAATGATATGAAGTTTATGAACATTTGAATTCCAATCTTCAA
TCTTATTATTCTACCCCATAGATCTTGATGAGGCGCTTTTGCTGTCAACC
ACTCCACCAGgggaaaagaaatcaaaaaatgaaggtttgTATAAAATTGC
GTTAAAATTTGTCTTCAGTTTTGGGAGGGTAATGATATGAAGTTTATGAA
CATTTGAATTCCAATCATCAATTATATTATTCTACTCCATAGATGTTAAT
GAGGCGCTTTTGTTGTCAATCACTCCACCAGGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055095-exon-scaffold_250-1491911889:36199..36253 | TCONS_00055095-exon-scaffold_250-1491911889:36199..36253 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1510915933:36199..36253 | TCONS_00055095-exon-scaffold_250-1510915933:36199..36253 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1575043694:36199..36253 | TCONS_00055095-exon-scaffold_250-1575043694:36199..36253 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1491911889:36716..37002 | TCONS_00055095-exon-scaffold_250-1491911889:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1510915933:36716..37002 | TCONS_00055095-exon-scaffold_250-1510915933:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1575043694:36716..37002 | TCONS_00055095-exon-scaffold_250-1575043694:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1491911889:40941..40984 | TCONS_00055095-exon-scaffold_250-1491911889:40941..40984 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1510915933:40941..40984 | TCONS_00055095-exon-scaffold_250-1510915933:40941..40984 | Clytia hemisphaerica | exon |
| TCONS_00055095-exon-scaffold_250-1575043694:40941..40984 | TCONS_00055095-exon-scaffold_250-1575043694:40941..40984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:36199..40984 + |
Blast
The following BLAST results are available for this feature:
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