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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055097 ID=TCONS_00055097|Name=TCONS_00055097|organism=Clytia hemisphaerica|type=transcript|length=1553bp
GCGAATTTAGTTtagttcaaatttttgaaagattcgaatgtcagaggttc
gaattagagagagtcggcTGTTGTCTAATTCTGTTGTTTTTAATTCTTGC
AGTTTTCTTGATGTGGTGGAAACTTCTAAGCGTCTTTTTCGGTTCCTTAA
AGTTTGGAGAAAGGGACCATTTTTCCCATAGTAATAAAtcttaatgttta
tttttttttacaatataaaaataatttaaagctagcaaaaaaaaaattat
gtctaAGTTAATTGAGTTTTACTAATAATGATAatgttacaaaaaaaaaa
tcaaaaacaatggaaagtcgaaaaaaaaagcaaaatattttgaatacatA
AACTAAAATTAatagatgaaaaataaaattgtaaattaatcgcgcgaaaa
aaaaaatatcataattttaaagttttgttttccttttctcgaaaaaaaaa
aaaataatgaaaagttGTGTGCAagtaaaatgactttttttttttgtaaa
aaaaagacGTTTCGTAAGTGTGACCATGCTTGATCCCATCCAAATACAAA
AACAAGCCAAATAACATGATCTGTGTTCAGATGtacgaaaagaaaaaaca
atattttccaAATTCTCCGTCTCCATAGCACAGGAGTCAAATATGAGTGA
TTTGTGAATGCAAAAATTTCGAATCCACCTACGGTTCATACACCATCTGT
TTGCGAAACGGTTTTCGAACTTTCACCACATCTCCAATAAGGCCATCGAA
ACAGAATACCAGCTTTGAAGttaatagtgagGTAAAACTCACTCAGTTGG
GGTAACACTTTACAATCAGATGTTGCGTGTTTCAATTTCACCACAAGTAA
AAACGTCACTCAGTATCGTTGCGTTAATGTTGATTTTGTTGTTCAGCATC
TATGACCATAGTATTTGCCATAAAATTTTTAGGCCAAAATAAACCAATGA
CCTTACGTCACAACAATATTCGACGATAATCCGTTTGGAACAACGTAATC
CGTCTGGTACTACGTCATACCATAACACGAGAATTTTTCGTAATCCCTAC
CGAACCTTTCATTTCCTTTCCACCAAAAGCCGCCCAACCGCCAGTACAAA
GACTCTTTGAATTTCCCATTCATAGAATTAGATTGCAGTTTCGAAAGATT
TCCATTCCGTAGCGGTCGGCGTGCTGCTCGATACAACAACCGGAACTGAA
TCgatttttgctgaatcagccTTTTTCTTAGAACTGGAACCGTCTGACCG
TGCCGAATTTACCACACTCTCGAGTCCCGATTCCGCAAGCACCGTCTCAC
TAAACGATGGCTCATCGTGCACTAGCTCATAACTATCGTTCAATTCCGAG
GGTGGTAAATTCTTACCCGCCTCGCCACCCGATGGTGCTTGGGGCGTAGA
TGTTATGGAGATACTTGACAGTCTATTGGAAGTAATGTTGGCTGTGGTTG
ATTCATCCAAAATGTTAGCCAGACTACTGGTACTCGGAGCTTCAGTGATC
TTGACAGACATGTCTTGGACATTGGACACACCAAATAACCTAATGATGGA
AAA Run BLAST on NCBI transcript from alignment at scaffold_250:63677..65387+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055097 ID=TCONS_00055097|Name=TCONS_00055097|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at scaffold_250:63677..65387+ (Clytia hemisphaerica)
GCGAATTTAGTTtagttcaaatttttgaaagattcgaatgtcagaggttc
gaattagagagagtcggcTGTTGTCTAATTCTGTTGTTTTTAATTCTTGC
AGTTTTCTTGATGTGGTGGAAACTTCTAAGCGTCTTTTTCGGTTCCTTAA
AGTTTGGAGAAAGGGACCATTTTTCCCATAGTAATAAAtcttaatgttta
tttttttttacaatataaaaataatttaaagctagcaaaaaaaaaattat
gtctaAGTTAATTGAGTTTTACTAATAATGATAatgttacaaaaaaaaaa
tcaaaaacaatggaaagtcgaaaaaaaaagcaaaatattttgaatacatA
AACTAAAATTAatagatgaaaaataaaattgtaaattaatcgcgcgaaaa
aaaaaatatcataattttaaagttttgttttccttttctcgaaaaaaaaa
aaaataatgaaaagttGTGTGCAagtaaaatgactttttttttttgtaaa
aaaaagacGTTTCGTAAGTGTGACCATGCTTGATCCCATCCAAATACAAA
AACAAGCCAAATAACATGATCTGTGTTCAGATGtacgaaaagaaaaaaca
atattttccaAATTCTCCGTCTCCATAGCACAGGAGTCAAATATGAGTGA
TTTGTGAATGCAAAAATTTCGAATCCACCTACGGTTCATACACCATCTGT
TTGCGAAACGGTTTTCGAACTTTCACCACATCTCCAATAAGGCCATCGAA
ACAGAATACCAGCTTTGAAGttaatagtgaggttaagtaaatcggtaaaa
tcacgacgaggAACgcaaatttaacaggctagcgagtttttttttttagc
gagaatttttctagaaatttcACTAGCCTTGTACATTTTTTGTCCGTCGT
CGCGATTATCcttgtatgcttaacctcagtaataGCAAGGTAAAACTCAC
TCAGTTGGGGTAACACTTTACAATCAGATGTTGCGTGTTTCAATTTCACC
ACAAGTAAAAACGTCACTCAGTATCGTTGCGTTAATGTTGATTTTGTTGT
TCAGCATCTATGACCATAGTATTTGCCATAAAATTTTTAGGCCAAAATAA
ACCAATGACCTTACGTCACAACAATATTCGACGATAATCCGTTTGGAACA
ACGTAATCCGTCTGGTACTACGTCATACCATAACACGAGAATTTTTCGTA
ATCCCTACCGAACCTTTCATTTCCTTTCCACCAAAAGCCGCCCAACCGCC
AGTACAAAGACTCTTTGAATTTCCCATTCATAGAATTAGATTGCAGTTTC
GAAAGATTTCCATTCCGTAGCGGTCGGCGTGCTGCTCGATACAACAACCG
GAACTGAATCgatttttgctgaatcagccTTTTTCTTAGAACTGGAACCG
TCTGACCGTGCCGAATTTACCACACTCTCGAGTCCCGATTCCGCAAGCAC
CGTCTCACTAAACGATGGCTCATCGTGCACTAGCTCATAACTATCGTTCA
ATTCCGAGGGTGGTAAATTCTTACCCGCCTCGCCACCCGATGGTGCTTGG
GGCGTAGATGTTATGGAGATACTTGACAGTCTATTGGAAGTAATGTTGGC
TGTGGTTGATTCATCCAAAATGTTAGCCAGACTACTGGTACTCGGAGCTT
CAGTGATCTTGACAGACATGTCTTGGACATTGGACACACCAAATAACCTA
ATGATGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055097-exon-scaffold_250-1491911889:63677..64457 | TCONS_00055097-exon-scaffold_250-1491911889:63677..64457 | Clytia hemisphaerica | exon |
| TCONS_00055097-exon-scaffold_250-1510915933:63677..64457 | TCONS_00055097-exon-scaffold_250-1510915933:63677..64457 | Clytia hemisphaerica | exon |
| TCONS_00055097-exon-scaffold_250-1575043694:63677..64457 | TCONS_00055097-exon-scaffold_250-1575043694:63677..64457 | Clytia hemisphaerica | exon |
| TCONS_00055097-exon-scaffold_250-1491911889:64616..65387 | TCONS_00055097-exon-scaffold_250-1491911889:64616..65387 | Clytia hemisphaerica | exon |
| TCONS_00055097-exon-scaffold_250-1510915933:64616..65387 | TCONS_00055097-exon-scaffold_250-1510915933:64616..65387 | Clytia hemisphaerica | exon |
| TCONS_00055097-exon-scaffold_250-1575043694:64616..65387 | TCONS_00055097-exon-scaffold_250-1575043694:64616..65387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:63677..65387 + |
Blast
The following BLAST results are available for this feature:
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