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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055099 ID=TCONS_00055099|Name=TCONS_00055099|organism=Clytia hemisphaerica|type=transcript|length=1279bp
CCAAGGTTCGTTTGGAACGATGTCGAAATAGAAAAAGTTGGACATGTTCC
TTCAAATATTGACGGTTTAAAGGTTTACCATGTGAAGACGTTAGGAGAAC
AAACTTTGACTCAAAATCTAAAGGATGGTAGAAATTGGAGCCAGGATTCA
AGATCACAGTGGGCTGAATATAAGACAGTCAGGTACCGGGATTGTTTAGG
TGGAAGAAGTTGCCCAAATGGTCACTGTCCGTACATTATCGAATTTCAGA
AGGTAAATGATGTAGACTTTGATAAAAATGGATTTTGCAAATTCTGTCAG
GCAACTGGAATATTGGGAATTTGTCATGCTCGAAAATATGTAGCATATAC
ACATATTGCTACTGAAGCGTACGTTTATCATTATGGTAAACACAACTGTT
CTGCAAAACAAATTAACCAATTACCGGTTTGTGATATCGCCAAAGCAGTA
GAAAACAATCCCTCGATACGACCAGCAGAAATCCAAACCAACGCAATTGT
TTCTGCATTGCGAAACCGCACCTCCTGGGGCAGTATATTCCAAACTGCTG
AGAAACTATCTGATACCAGAAAAATTTCCAATGCAAAAAGCAAGCAGAAG
AAAGCAATCTATCCAAGTGGGGAAGATTTTAAAGGGGTGATCGAGTTGAA
AGAATACACTGACAAACAGGACGTTTATTTCATTTATGACATAAATCGTG
AAAACCAGCACATTTTTAAAAGCTCGAAAGGGTCTCTTAAAATTGCAAAT
GATATGTGTAACACTACACATTTCCTGAAAGAAGAATACTGTCACTTTGA
TGGAAACCATAAAAGGACCAAAGACTTTGTAACACTCACTGCCAGCACAT
ATCACCCTCTTTTGAAGAAGCAAGTTTCCTTGGCTTCAATGCAATGTAAA
CACGAGGACGGTGAAACTGTTGAATTGTTTTGGAGAACTTTCAATGAAGC
ATTCAAAAGTGCAAACGACGTAAATTATCGATTTGAACCAAAAGGTTGGT
GTACCGATATGGTTACTGCTAATTTCAATGGCTTGGTCAAAATCTACGGA
GAAGACATCCTTGAAAACGTGAAAGGGTGCAATTTCATTTCCGGCAATCA
GTCGAAAAGAAAGCAAGAACCTATGGTGAAGATTTTCGTCAAAAAGCAAG
TGACTTTCTAGAAGCATCAACAGAGGAAGCTTACAAGGCAGTCTATGCAA
ATCTCAAGACATACATCAGCCGCTCGCCAGTGTCAAATGCAGAAAACTTG
ACTGATTGGCTAGCTTGGTGGGATTCCCG Run BLAST on NCBI protein sequence of TCONS_00055099-protein >TCONS_00055099-protein ID=TCONS_00055099-protein|Name=TCONS_00055099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
PRFVWNDVEIEKVGHVPSNIDGLKVYHVKTLGEQTLTQNLKDGRNWSQDS
RSQWAEYKTVRYRDCLGGRSCPNGHCPYIIEFQKVNDVDFDKNGFCKFCQ
ATGILGICHARKYVAYTHIATEAYVYHYGKHNCSAKQINQLPVCDIAKAV
ENNPSIRPAEIQTNAIVSALRNRTSWGSIFQTAEKLSDTRKISNAKSKQK
KAIYPSGEDFKGVIELKEYTDKQDVYFIYDINRENQHIFKSSKGSLKIAN
DMCNTTHFLKEEYCHFDGNHKRTKDFVTLTASTYHPLLKKQVSLASMQCK
HEDGETVELFWRTFNEAFKSANDVNYRFEPKGWCTDMVTANFNGLVKIYG
EDILENVKGCNFISGNQSKRKQEPMVKIFVKKQVTF Run BLAST on NCBI transcript from alignment at scaffold_250:188868..191049+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055099 ID=TCONS_00055099|Name=TCONS_00055099|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at scaffold_250:188868..191049+ (Clytia hemisphaerica)
CCAAGGTTCGTTTGGAACGATGTCGAAATAGAAAAAGTTGGACATGTTCC
TTCAAATATTGACGGTTTAAAGGTTTACCATGTGAAGACGTTAGGAGAAC
AAACTTTGACTCAAAATCTAAAGGATGGTAGAAATTGGAGCCAGGATTCA
AGATCACAGTGGGCTGAATATAAGACAGTCAGGTACCGGGATTGTTTAGG
TGGAAGAAGTTGCCCAAATGGTCACTGTCCGTACATTATCGAATTTCAGA
AGGTAAATGATGTAGACTTTGATAAAAATGGATTTTGCAAATTCTGTCAG
GCAACTGGAATATTGGGAATTTGTCATGCTCGAAAATATGTAGCATATAC
ACATATTGCTACTGAAGCGTACGTTTATCATTATGGTAAACACAACTGTT
CTGCAAAACAAATTAACCAATTACCGGTTTGTGATATCGCCAAAGCAGTA
GAAAACAATCCCTCGATACGACCAGCAGAAATCCAAACCAACGCAATTGT
TTCTGCATTGCGAAACCGCACCTCCTGGGGCAGTATATTCCAAACTGCTG
AGAAACTATCTGATACCAGAAAAATTTCCAATGCAAAAAGCAAGCAGAAG
AAAGCAATCTATCCAAGTGGGGAAGATTTTAAAGGGGTGATCGAGTTGAA
AGAATACACTGACAAACAGGACGTTTATTTCATTTATGACATAAATCGTG
AAAACCAGCACATTTTTAAAAGCTCGAAAGGGTCTCTTAAAATTGCAAAT
GATATGTGTAACACTACACATTTCCTGAAAGAAGAATACTGTCACTTTGA
TGGAAACCATAAAAGGACCAAAGACTTTGTAACACTCACTGCCAGCACAT
ATCACCCTCTTTTGAAGAAGCAAGTTTCCTTGGCTTCAATGCAATGTAAA
CACGAGGACGGTGAAACTGTTGAATTGTTTTGGAGAACTTTCAATGAAGC
ATTCAAAAGTGCAAACGACGTAAATTATCGATTTGAACCAAAAGGTTGGT
GTACCGATATGGTTACTGCTAATTTCAATGGCTTGGTCAAAATCTACGGA
GAAGACATCCTTGAAAACGTGAAAGGGTGCAATTTCATTTCCGGCAATCA
GTCGAAAAGAAAGCAAGAACCTATGGTGAAGATTTTCGTCAAAAAGCAAG
TGACTTTCTAGAAGCATCAACAGAGGAAGCTTACAAGGCAGTCTATGCAA
ATCTCAAGACATACATCAGCCGCTCGCCAGGTAccttaaagaaaataatt
tggcgagaacttaaAATTTTACGGATTAGGCGAATTTGGCCGACATTCAC
CAACTTAAGTCCCCCCCTCagatttaactttttgaaaatatgagctcttt
aaaggtttatttttctccttttgactgtttttttctctaaatttttcagc
aaccgccaaattaaattcccgccaaaatttagNGAATTTCATTTCCGGCA
ATCAGTTGAAAAGAAAGCAAGAACCTATGGTGAAGATTTTCGTCAAAAAG
CAAGTGAACTTCTAGAAGCATGAACAGAGGAAGCTTACAAGACAGCCTCT
GCAAATCTCAAGACATACATCAGCCGCTCGCCAGGTAccttaaagaaaat
aatttggcgagaacttaattTTACGGATTAGGCGAATTTGGCCGACATTC
GCCAACTTAAGTCCCCCCCGCCagatttaactttttgaaaatatgagctc
tttaaaggtttatttttctccttttgactgttttttttctcgcaatttta
aggttaaatttttcagcaaccgccaaattaaattcccgccaaaatttagt
TCCATTAAGGTAGTTGTAATAAAACCTGcataattatattttttttgcgt
tttgaaatataatttttattctactctaaatgtaaacaaatatcTATAGT
CATAAAATCGAAACCAACTACCATTTAAGCTTTAAAAgtgtacttaattt
cgcggtaaCTAAAATTTCGCCGTTTTTTTACAACTGAAAGGTTATTACAT
ATTGCAATCGAcggattttaaaagaaatcatGCTTTCGATTGaaaagttt
atttatttcatgGGAAAATCTAAAAATAGGTTTTGTTTAAAGAAATAACA
TTTTATTGTTCATACTTGCATGACTTTTTTTAGTGTCAAATGCAGAAAAC
TTGACTGATTGGCTAGCTTGGTGGGATTCCCG Coding sequence (CDS) from alignment at scaffold_250:188868..191049+ >TCONS_00055099 ID=TCONS_00055099|Name=TCONS_00055099|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_250:188868..191049+ (Clytia hemisphaerica)
CCAAGGTTCGTTTGGAACGATGTCGAAATAGAAAAAGTTGGACATGTTCC
TTCAAATATTGACGGTTTAAAGGTTTACCATGTGAAGACGTTAGGAGAAC
AAACTTTGACTCAAAATCTAAAGGATGGTAGAAATTGGAGCCAGGATTCA
AGATCACAGTGGGCTGAATATAAGACAGTCAGGTACCGGGATTGTTTAGG
TGGAAGAAGTTGCCCAAATGGTCACTGTCCGTACATTATCGAATTTCAGA
AGGTAAATGATGTAGACTTTGATAAAAATGGATTTTGCAAATTCTGTCAG
GCAACTGGAATATTGGGAATTTGTCATGCTCGAAAATATGTAGCATATAC
ACATATTGCTACTGAAGCGTACGTTTATCATTATGGTAAACACAACTGTT
CTGCAAAACAAATTAACCAATTACCGGTTTGTGATATCGCCAAAGCAGTA
GAAAACAATCCCTCGATACGACCAGCAGAAATCCAAACCAACGCAATTGT
TTCTGCATTGCGAAACCGCACCTCCTGGGGCAGTATATTCCAAACTGCTG
AGAAACTATCTGATACCAGAAAAATTTCCAATGCAAAAAGCAAGCAGAAG
AAAGCAATCTATCCAAGTGGGGAAGATTTTAAAGGGGTGATCGAGTTGAA
AGAATACACTGACAAACAGGACGTTTATTTCATTTATGACATAAATCGTG
AAAACCAGCACATTTTTAAAAGCTCGAAAGGGTCTCTTAAAATTGCAAAT
GATATGTGTAACACTACACATTTCCTGAAAGAAGAATACTGTCACTTTGA
TGGAAACCATAAAAGGACCAAAGACTTTGTAACACTCACTGCCAGCACAT
ATCACCCTCTTTTGAAGAAGCAAGTTTCCTTGGCTTCAATGCAATGTAAA
CACGAGGACGGTGAAACTGTTGAATTGTTTTGGAGAACTTTCAATGAAGC
ATTCAAAAGTGCAAACGACGTAAATTATCGATTTGAACCAAAAGGTTGGT
GTACCGATATGGTTACTGCTAATTTCAATGGCTTGGTCAAAATCTACGGA
GAAGACATCCTTGAAAACGTGAAAGGGTGCAATTTCATTTCCGGCAATCA
GTCGAAAAGAAAGCAAGAACCTATGGTGAAGATTTTCGTCAAAAAGCAAG
TGACTTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055099-exon-scaffold_250-1491911889:188868..190097 | TCONS_00055099-exon-scaffold_250-1491911889:188868..190097 | Clytia hemisphaerica | exon |
| TCONS_00055099-exon-scaffold_250-1510915933:188868..190097 | TCONS_00055099-exon-scaffold_250-1510915933:188868..190097 | Clytia hemisphaerica | exon |
| TCONS_00055099-exon-scaffold_250-1575043694:188868..190097 | TCONS_00055099-exon-scaffold_250-1575043694:188868..190097 | Clytia hemisphaerica | exon |
| TCONS_00055099-exon-scaffold_250-1491911889:191001..191049 | TCONS_00055099-exon-scaffold_250-1491911889:191001..191049 | Clytia hemisphaerica | exon |
| TCONS_00055099-exon-scaffold_250-1510915933:191001..191049 | TCONS_00055099-exon-scaffold_250-1510915933:191001..191049 | Clytia hemisphaerica | exon |
| TCONS_00055099-exon-scaffold_250-1575043694:191001..191049 | TCONS_00055099-exon-scaffold_250-1575043694:191001..191049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:188868..191049 + |
Blast
The following BLAST results are available for this feature:
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