TCONS_00055103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055103
Unique NameTCONS_00055103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055103 ID=TCONS_00055103|Name=TCONS_00055103|organism=Clytia hemisphaerica|type=transcript|length=687bp
GGGGACCCATCACCTCCTCGGAAAAAGAGTAAAGTTGctTCCAGATCACA
ATCACAAAGAAAGTTTTCAGATGACCAGGGGAAGAGAAAAAACTATGGCG
CCCACAAAGTTGATTCAGATGATGATTCATCAGGCAGTGAAAGTTCTGAA
AGAGAAGATAATCGTACTATGAATTTGTCGACTTTGAAAAATACACATCT
TTCATCACAATCGTCTCCCCTAATTCATTTTGACGGCGGCCCATTTAATG
AATCGCCACTGCCAAAAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGG
TCACCTCGTAAGCACGTAACACCAAATTCACATAAGTCAACATTTTCAAC
GAGTAGCAGTGGAAAAGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGA
GTTCAAGAAAAAGTCTTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCA
GGAAAAGGAAAACATCGCAGCAAATCCGCAGCATGTAATATCCAAGACAT
GTACCCATTACCTGAAGCAGaatttcagcGGAAGCAAATAAACCTTCTCT
TGGAAATAAAAAAGTTGGTGGGCGGTCCTAATAAGGACAAAATTTATGAC
CGTACAGAGAAGAAAAAGTGTGAAACCGTGGAAGAATTGTGTGCATATGA
TAAGAAGCTGGACGATCAGAAGGAGTTTGAAAATTTG
Run BLAST on NCBI

protein sequence of TCONS_00055103-protein

>TCONS_00055103-protein ID=TCONS_00055103-protein|Name=TCONS_00055103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
GDPSPPRKKSKVASRSQSQRKFSDDQGKRKNYGAHKVDSDDDSSGSESSE
REDNRTMNLSTLKNTHLSSQSSPLIHFDGGPFNESPLPKKTVRENESPRR
SPRKHVTPNSHKSTFSTSSSGKERKSESRSESKSSRKSLGFGSGTKSSES
GKGKHRSKSAACNIQDMYPLPEAEFQRKQINLLLEIKKLVGGPNKDKIYD
RTEKKKCETVEELCAYDKKLDDQKEFENL
Run BLAST on NCBI

transcript from alignment at scaffold_250:269286..271855+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055103 ID=TCONS_00055103|Name=TCONS_00055103|organism=Clytia hemisphaerica|type=transcript|length=2570bp|location=Sequence derived from alignment at scaffold_250:269286..271855+ (Clytia hemisphaerica)
GGGGACCCATCACCTCCTCGGAAAAAGAGTAAAGTTGGTAAGTGTTGTCA
TATGTTTTCAGTATACATTGTATGATTTCTTATTACTGAACTGAAAGGTT
TGTAAATCTAATAGCTATTATATTTTCCCTGGCTCTGTTAAAAGCATGAG
ATAAAACGgaattaattttgtttttaagctTCCAGATCACAATCACAAAG
AAAGTTTTCAGATGACCAGGGGAAGAGAAAAAACTATGGTAAAACCTTAT
CCTTGTAAGGTTGTAACTTTTGGTTGCATTCTAGTTGCACCATCATGctc
attaaaaagatatttgcgatattatcctaacaatatttgaaaagaattaa
tagtggaaaatgaaaattaaagaaaaaatgaactttttgtaGAATTGAAT
TACAATGACCATTTCCACgattttttacacaattttcattttcatttttc
aatactttttgGAATAAATTTTATAAGATATGATATTCCAACATTAAATG
TCTTTTCAAGAGAACAAATCGACACTTCAATTCTTGGTCTCTAAAGTTAC
ATCCAGTTATAGTCACTGTAGAGTGTTTTGagattaattcattttttaac
ATACTGAcaatattaagcagatattcaataggtaaaagttgtaGAGTGTA
GGAACTATTCAATGACTGTTTTTGCCTACGGGTATATAATAAAATAAGTT
AACCCTTTCAGTCCCAGTTTTTTTTTACCTCAAAAAAGAATTATTTCAAT
GAACGTCATAGAATTATTAAATTGTAGCCTTTTGGAAGCTCTAAATTGAC
TACTTGTTATCCTCATAATTTTGACAACTTCAGTCTTTCATTTTAGAAGA
ATCACAGTTcatttctttgtttgattttatgTTAGGCGCCCACAAAGTTG
ATTCAGATGATGATTCATCAGGCAGTGAAAGTTCTGAAAGTAAGTTACAT
gttttaacctttttttaaatctattacATCTTTTTTTTTGATTAAGTTGT
CCTAGGATTGAATTATAGACTAAACTGGATGCtgactttttaaattgtta
AATACACTAGATATTTTGACAAGATTACTGTAATTATTTTGCTTTACTTT
TTTTAAGGAGAAGATAATCGTACTATGAATTTGTCGACTTTGAAAAATAG
TAAGTGCACTCTGATAGAAATGTTGGGGATGCTGGAAACGGGGTATACAT
ACATACAACGCAGGCGTCTGGGTTTAAGATCTTAcaaaatattgtaaaca
aaGGAACTAACTCTATAACTATCAGTTGCTGAAAAACACAACAGATTTTT
CTATTTCCCCAAATAACTTTTGTAACCTATCTTATGACATGGGTTAAATG
ATTAATGATTCgcaaaataaaaagacaaagaGCAAAAATNTTGCTGAAAA
ACACAACAGATTTTTCTATTTCCCCAAATAACTTTTGTAACCTATCTTAT
GACATGGGTTAAATGATTAATGATTCgcaaaataaaaagacaaagaGCAA
AAATAGACGTAATATAATGCCATTGAAAAACTTTACTCTATCTAATTGAA
GTAATAGAACCTGATTAtagcttttctttttccttttataGCACATCTTT
CATCACAATCGTCTCCCCTAATTCATTTTGACGGCGGCCCATTTAATGAA
TCGCCACTGCCAAAAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGGTC
ACCTCGTAAGCACGTAACACCAAATTCACATAAGTCAACATTTTCAACGA
GTAGCAGTGGAAAAGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGAGT
TCAAGAAAAAGTCTTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCAGG
TATGTATGACAGTTTTTACAAAGAATTAATGAGCACTGTCACTTAATTCT
TGACAGTGCCATCTGTTTGATTATATTCAGCAAAAGTATTTATGGTACAT
TTCTTTTCCGTATGAttcttttgaatgaaatggTTATAcacagaaatctt
ttttttaatcggTGAAAAGATATTCCTTGTGTGCAGTATGTAGTATACAA
ATGTATATTATATTATAGGAAAAGGAAAACATCGCAGCAAATCCGCAGCA
TGTAATATCCAAGACATGTACCCATTACCTGAAGCAGGTCAGTATGGATT
TatgaatttgattttaaagTTGCCTTTCAATGAGCTAATATTTTAAGTGT
ACATATATATTCATCACCGTCTCTTAGCATGTATGATACTACTGAAATCA
TAATATCTATATAGCCGCCTGATGGAAGACTGAGATGAAACGAAAACTTT
GTGTATGATAGCAACAGTTTATGAGAAAAGCTTTTCGGTTTTAGAAAACG
GGAcggaatgaataaataaaaaaactttacaatcaTACTCATcgattttt
cagaatttcagcGGAAGCAAATAAACCTTCTCTTGGAAATAAAAAAGTTG
GTGGGCGGTCCTAATAAGGACAAAATTTATGACCGTACAGAGAAGAAAAA
GTGTGAAACCGTGGAAGAATTGTGTGCATATGATAAGAAGCTGGACGATC
AGAAGGAGTTTGAAAATTTG

Coding sequence (CDS) from alignment at scaffold_250:269286..271855+

>TCONS_00055103 ID=TCONS_00055103|Name=TCONS_00055103|organism=Clytia hemisphaerica|type=CDS|length=4809bp|location=Sequence derived from alignment at scaffold_250:269286..271855+ (Clytia hemisphaerica)
GGGGACCCATCACCTCCTCGGAAAAAGAGTAAAGTTGctTCCAGATCACA
ATCACAAAGAAAGTTTTCAGATGACCAGGGGAAGAGAAAAAACTATGGCG
CCCACAAAGTTGATTCAGATGATGATTCATCAGGCAGTGAAAGTTCTGAA
AGAGAAGATAATCGTACTATGAATTTGTCGACTTTGAAAAATACACATCT
TTCATCACAATCGTCTCCCCTAATTCATTTTGACGGCGGCCCATTTAATG
AATCGCCACTGCCAAAAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGG
TCACCTCGTAAGCACGTAACACCAAATTCACATAAGTCAACATTTTCAAC
GAGTAGCAGTGGAAAAGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGA
GTTCAAGAAAAAGTCTTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCA
GGAAAAGGAAAACATCGCAGCAAATCCGCAGCATGTAATATCCAAGACAT
GTACCCATTACCTGAAGCAGaatttcagcGGAAGCAAATAAACCTTCTCT
TGGAAATAAAAAAGTTGGTGGGCGGTCCTAATAAGGACAAAATTTATGAC
CGTACAGAGAAGAAAAAGTGTGAAACCGTGGAAGAATTGTGTGCATATGA
TAAGAAGCTGGACGATCAGAAGGAGTTTGAAAATTTGGGGGACCCATCAC
CTCCTCGGAAAAAGAGTAAAGTTGctTCCAGATCACAATCACAAAGAAAG
TTTTCAGATGACCAGGGGAAGAGAAAAAACTATGGCGCCCACAAAGTTGA
TTCAGATGATGATTCATCAGGCAGTGAAAGTTCTGAAAGAGAAGATAATC
GTACTATGAATTTGTCGACTTTGAAAAATACACATCTTTCATCACAATCG
TCTCCCCTAATTCATTTTGACGGCGGCCCATTTAATGAATCGCCACTGCC
AAAAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGGTCACCTCGTAAGC
ACGTAACACCAAATTCACATAAGTCAACATTTTCAACGAGTAGCAGTGGA
AAAGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGAGTTCAAGAAAAAG
TCTTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCAGGAAAAGGAAAAC
ATCGCAGCAAATCCGCAGCATGTAATATCCAAGACATGTACCCATTACCT
GAAGCAGaatttcagcGGAAGCAAATAAACCTTCTCTTGGAAATAAAAAA
GTTGGTGGGCGGTCCTAATAAGGACAAAATTTATGACCGTACAGAGAAGA
AAAAGTGTGAAACCGTGGAAGAATTGTGTGCATATGATAAGAAGCTGGAC
GATCAGAAGGAGTTTGAAAATTTGGGGGACCCATCACCTCCTCGGAAAAA
GAGTAAAGTTGctTCCAGATCACAATCACAAAGAAAGTTTTCAGATGACC
AGGGGAAGAGAAAAAACTATGGCGCCCACAAAGTTGATTCAGATGATGAT
TCATCAGGCAGTGAAAGTTCTGAAAGAGAAGATAATCGTACTATGAATTT
GTCGACTTTGAAAAATACACATCTTTCATCACAATCGTCTCCCCTAATTC
ATTTTGACGGCGGCCCATTTAATGAATCGCCACTGCCAAAAAAAACCGTC
CGAGAAAACGAAAGTCCGAGACGGTCACCTCGTAAGCACGTAACACCAAA
TTCACATAAGTCAACATTTTCAACGAGTAGCAGTGGAAAAGAGAGAAAGA
GTGAATCAAGGAGTGAATCAAAGAGTTCAAGAAAAAGTCTTGGTTTTGGC
TCGGGAACCAAATCAAGCGAATCAGGAAAAGGAAAACATCGCAGCAAATC
CGCAGCATGTAATATCCAAGACATGTACCCATTACCTGAAGCAGaatttc
agcGGAAGCAAATAAACCTTCTCTTGGAAATAAAAAAGTTGGTGGGCGGT
CCTAATAAGGACAAAATTTATGACCGTACAGAGAAGAAAAAGTGTGAAAC
CGTGGAAGAATTGTGTGCATATGATAAGAAGCTGGACGATCAGAAGGAGT
TTGAAAATTTGGGGGACCCATCACCTCCTCGGAAAAAGAGTAAAGTTGct
TCCAGATCACAATCACAAAGAAAGTTTTCAGATGACCAGGGGAAGAGAAA
AAACTATGGCGCCCACAAAGTTGATTCAGATGATGATTCATCAGGCAGTG
AAAGTTCTGAAAGAGAAGATAATCGTACTATGAATTTGTCGACTTTGAAA
AATACACATCTTTCATCACAATCGTCTCCCCTAATTCATTTTGACGGCGG
CCCATTTAATGAATCGCCACTGCCAAAAAAAACCGTCCGAGAAAACGAAA
GTCCGAGACGGTCACCTCGTAAGCACGTAACACCAAATTCACATAAGTCA
ACATTTTCAACGAGTAGCAGTGGAAAAGAGAGAAAGAGTGAATCAAGGAG
TGAATCAAAGAGTTCAAGAAAAAGTCTTGGTTTTGGCTCGGGAACCAAAT
CAAGCGAATCAGGAAAAGGAAAACATCGCAGCAAATCCGCAGCATGTAAT
ATCCAAGACATGTACCCATTACCTGAAGCAGaatttcagcGGAAGCAAAT
AAACCTTCTCTTGGAAATAAAAAAGTTGGTGGGCGGTCCTAATAAGGACA
AAATTTATGACCGTACAGAGAAGAAAAAGTGTGAAACCGTGGAAGAATTG
TGTGCATATGATAAGAAGCTGGACGATCAGAAGGAGTTTGAAAATTTGGG
GGACCCATCACCTCCTCGGAAAAAGAGTAAAGTTGctTCCAGATCACAAT
CACAAAGAAAGTTTTCAGATGACCAGGGGAAGAGAAAAAACTATGGCGCC
CACAAAGTTGATTCAGATGATGATTCATCAGGCAGTGAAAGTTCTGAAAG
AGAAGATAATCGTACTATGAATTTGTCGACTTTGAAAAATACACATCTTT
CATCACAATCGTCTCCCCTAATTCATTTTGACGGCGGCCCATTTAATGAA
TCGCCACTGCCAAAAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGGTC
ACCTCGTAAGCACGTAACACCAAATTCACATAAGTCAACATTTTCAACGA
GTAGCAGTGGAAAAGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGAGT
TCAAGAAAAAGTCTTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCAGG
AAAAGGAAAACATCGCAGCAAATCCGCAGCATGTAATATCCAAGACATGT
ACCCATTACCTGAAGCAGaatttcagcGGAAGCAAATAAACCTTCTCTTG
GAAATAAAAAAGTTGGTGGGCGGTCCTAATAAGGACAAAATTTATGACCG
TACAGAGAAGAAAAAGTGTGAAACCGTGGAAGAATTGTGTGCATATGATA
AGAAGCTGGACGATCAGAAGGAGTTTGAAAATTTGGGGGACCCATCACCT
CCTCGGAAAAAGAGTAAAGTTGctTCCAGATCACAATCACAAAGAAAGTT
TTCAGATGACCAGGGGAAGAGAAAAAACTATGGCGCCCACAAAGTTGATT
CAGATGATGATTCATCAGGCAGTGAAAGTTCTGAAAGAGAAGATAATCGT
ACTATGAATTTGTCGACTTTGAAAAATACACATCTTTCATCACAATCGTC
TCCCCTAATTCATTTTGACGGCGGCCCATTTAATGAATCGCCACTGCCAA
AAAAAACCGTCCGAGAAAACGAAAGTCCGAGACGGTCACCTCGTAAGCAC
GTAACACCAAATTCACATAAGTCAACATTTTCAACGAGTAGCAGTGGAAA
AGAGAGAAAGAGTGAATCAAGGAGTGAATCAAAGAGTTCAAGAAAAAGTC
TTGGTTTTGGCTCGGGAACCAAATCAAGCGAATCAGGAAAAGGAAAACAT
CGCAGCAAATCCGCAGCATGTAATATCCAAGACATGTACCCATTACCTGA
AGCAGaatttcagcGGAAGCAAATAAACCTTCTCTTGGAAATAAAAAAGT
TGGTGGGCGGTCCTAATAAGGACAAAATTTATGACCGTACAGAGAAGAAA
AAGTGTGAAACCGTGGAAGAATTGTGTGCATATGATAAGAAGCTGGACGA
TCAGAAGGAGTTTGAAAATTTGGGGGACCCATCACCTCCTCGGAAAAAGA
GTAAAGTTGctTCCAGATCACAATCACAAAGAAAGTTTTCAGATGACCAG
GGGAAGAGAAAAAACTATGGCGCCCACAAAGTTGATTCAGATGATGATTC
ATCAGGCAGTGAAAGTTCTGAAAGAGAAGATAATCGTACTATGAATTTGT
CGACTTTGAAAAATACACATCTTTCATCACAATCGTCTCCCCTAATTCAT
TTTGACGGCGGCCCATTTAATGAATCGCCACTGCCAAAAAAAACCGTCCG
AGAAAACGAAAGTCCGAGACGGTCACCTCGTAAGCACGTAACACCAAATT
CACATAAGTCAACATTTTCAACGAGTAGCAGTGGAAAAGAGAGAAAGAGT
GAATCAAGGAGTGAATCAAAGAGTTCAAGAAAAAGTCTTGGTTTTGGCTC
GGGAACCAAATCAAGCGAATCAGGAAAAGGAAAACATCGCAGCAAATCCG
CAGCATGTAATATCCAAGACATGTACCCATTACCTGAAGCAGaatttcag
cGGAAGCAAATAAACCTTCTCTTGGAAATAAAAAAGTTGGTGGGCGGTCC
TAATAAGGACAAAATTTATGACCGTACAGAGAAGAAAAAGTGTGAAACCG
TGGAAGAATTGTGTGCATATGATAAGAAGCTGGACGATCAGAAGGAGTTT
GAAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034712XLOC_034712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055103-exon-scaffold_250-1491911889:269286..269322TCONS_00055103-exon-scaffold_250-1491911889:269286..269322Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:269286..269322TCONS_00055103-exon-scaffold_250-1510915933:269286..269322Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:269286..269322TCONS_00055103-exon-scaffold_250-1575043694:269286..269322Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:269464..269523TCONS_00055103-exon-scaffold_250-1491911889:269464..269523Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:269464..269523TCONS_00055103-exon-scaffold_250-1510915933:269464..269523Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:269464..269523TCONS_00055103-exon-scaffold_250-1575043694:269464..269523Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:270171..270224TCONS_00055103-exon-scaffold_250-1491911889:270171..270224Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:270171..270224TCONS_00055103-exon-scaffold_250-1510915933:270171..270224Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:270171..270224TCONS_00055103-exon-scaffold_250-1575043694:270171..270224Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:270393..270434TCONS_00055103-exon-scaffold_250-1491911889:270393..270434Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:270393..270434TCONS_00055103-exon-scaffold_250-1510915933:270393..270434Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:270393..270434TCONS_00055103-exon-scaffold_250-1575043694:270393..270434Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:270877..271134TCONS_00055103-exon-scaffold_250-1491911889:270877..271134Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:270877..271134TCONS_00055103-exon-scaffold_250-1510915933:270877..271134Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:270877..271134TCONS_00055103-exon-scaffold_250-1575043694:270877..271134Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:271354..271422TCONS_00055103-exon-scaffold_250-1491911889:271354..271422Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:271354..271422TCONS_00055103-exon-scaffold_250-1510915933:271354..271422Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:271354..271422TCONS_00055103-exon-scaffold_250-1575043694:271354..271422Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1491911889:271689..271855TCONS_00055103-exon-scaffold_250-1491911889:271689..271855Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1510915933:271689..271855TCONS_00055103-exon-scaffold_250-1510915933:271689..271855Clytia hemisphaericaexon
TCONS_00055103-exon-scaffold_250-1575043694:271689..271855TCONS_00055103-exon-scaffold_250-1575043694:271689..271855Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055103-proteinTCONS_00055103-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:269286..271855 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416148	0.0741452	0.504222	0	11.9063	11.7209	5.7472	5.36864	2.7507	3.50748	3.48242	3.64774	2.53261	3.00972	1.83878	1.49497	4.06015	2.25326	6.03385	11.9316	2.64595	2.44416	2.39096	1.94409	3.17961	5.00399	5.01886	1.53605	3.65055	3.04175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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