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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055104 ID=TCONS_00055104|Name=TCONS_00055104|organism=Clytia hemisphaerica|type=transcript|length=6983bpRun BLAST on NCBI protein sequence of TCONS_00055104-protein >TCONS_00055104-protein ID=TCONS_00055104-protein|Name=TCONS_00055104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1851bp MSNKKSQKEFTICVVGLSGYDNQEKRLYGVGKSCFCNRLVRPAQDEYYTDRun BLAST on NCBI transcript from alignment at scaffold_250:63677..108372- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055104 ID=TCONS_00055104|Name=TCONS_00055104|organism=Clytia hemisphaerica|type=transcript|length=44696bp|location=Sequence derived from alignment at scaffold_250:63677..108372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_250:63677..108372- >TCONS_00055104 ID=TCONS_00055104|Name=TCONS_00055104|organism=Clytia hemisphaerica|type=CDS|length=122232bp|location=Sequence derived from alignment at scaffold_250:63677..108372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055104 vs. Swiss-Prot (Human)
Match: RHG05 (Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2) HSP 1 Score: 504.597 bits (1298), Expect = 1.738e-148 Identity = 332/961 (34.55%), Postives = 525/961 (54.63%), Query Frame = 2
Query: 170 FTICVVGLSGYDNQEKRLYGVGKSCFCNRLVRPAQDEYYTDHASVFSTSDFVGTVLNSDHFLYWGTAERNIENAETKGRIKIIEHTEFIDDASYSPLSKGGQLAAYTKRATSAKISSSGKMMYISRDQVALQNEFEEKQMEE-KLQVDAFVCIYDVSTMLSKRTHYIQLQEEVLSNLLSNIAKTKKPAIIVASKCDKGDTQILQRAQNFVTNKKLNTQLVESSSELDVNVDYAFQVLWSLLDTKNKHRVKPKPLSYQEGLLIQNEKVSGLNKKYLNLIQRCATENSLLMSWKDFQALHGESSIFKEYILACGSDKAQLVFNQQAKKIKRHHEDKKLNEFLNKLPDALDELLPTIQSIEANDWKWENCQKAIKNHLLFDKWFQVLPQGVPWNSNDQLFKKTDR-IPFDVLQVERSRACFDRHYKKLRESARKSRMKVEFRKLLELTLQIRPGTSWADASAWISNEESYKCLDEMERKVIFETYLREITYNAKTEFQELLFESANKFSKLNKESRPSESEMRELYEYLQDDSRYKDLENLDNARDILLFNHIALMQSPNR--CLSGPEKCMDRRIQHVVEMTERRTTQNPYXXXXXXXXXXXXXXXXXXXXXXXXRELEEKIRVGSSSCEDVEYIIDGQIYGLNLKVHDVSQNSTTGASEVQSIITDFRPQGYLAIYSSPDSLRFIKECLKEIEEHENQTH-----TALPLIVLLANEAGTPESEIQFLRNEGHNLANSLQCIFLDYPYTVSLMDDRIHSSQVEDSLRGVFDIINKR-SRPAGTPGGTDDYNCDVRILLCSMCGDEYSLELILSSMLQQNNCYSNPEKQ-DTIMLEAMVDGVKKTIAVTLGSYHRAYGL-KNQMFHGFILVYSAKRLASLETLKAYVATLPRNVPVQVLAVTGSSS----AASILFHKPDATYLLHDDXXXXXXXXXXXXXXNQANAFVNFFRDVCDKKTFTE 3004
+TI +VGLSG + ++K GVGKSC CNR VR DEYY +H SV ST DF G V+N+DHFLYWG +N E+ + +I +IE TEFIDD ++ P + L Y KRA ++K+ S+ K+MYI DQ+ L+ +FE+KQM E KL VD F+ DVS +++ Q + ++NL ++K+KKP II A+KCD+ L+ Q F +NKK N +VE+S+ +VN++ F L +LD K R KPK + Y + Q + V K+ L+Q T +WK ++EYI G+ KA+ F++ +++K+ H K+ E++N LP A + LLP ++ IE W K ++ F F VL + PW+ D + K DR IPFD+L + + H + L R+ MK +F+K LE I PG W + ++ +E+YK + E + K ++ + REI AK EFQE+LFE + F L+ + PS +M E++ L ++ RYK L+ L R+ LL HI + P + CLSG + C D +++ ++ + + + + +NL I+GK+GL +EL +IR S+ D EY +DG+IY L+L+ V S S++ + F+P G +++S +SL FI E + +I +Q LP ++LAN+ + + LR++G LAN LQC F+D P + + +Q++ +LRGV + + + P D D+RI++C+MCGD +S++LILS L ++C + Q +++ML+ ++ ++ I +T+ SYH + G+ K+++ HG+ILVYSAKR AS+ L+A+++ + +PVQ++AVT S + +I + ++ + T T L Q F FF DV +KK E
Sbjct: 13 YTISIVGLSGTE-KDKGNCGVGKSCLCNRFVRSKADEYYPEHTSVLSTIDFGGRVVNNDHFLYWGDIIQNSEDG-VECKIHVIEQTEFIDDQTFLP-HRSTNLQPYIKRAAASKLQSAEKLMYICTDQLGLEQDFEQKQMPEGKLNVDGFLLCIDVSQGCNRK---FDDQLKFVNNLFVQLSKSKKPVIIAATKCDECVDHYLREVQAFASNKK-NLLVVETSARFNVNIETCFTALVQMLD---KTRSKPKIIPYLDAYKTQRQLVVTATDKFEKLVQ---TVRDYHATWKTVSNKLKNHPDYEEYINLEGTRKARNTFSKHIEQLKQEHIRKRREEYINTLPRAFNTLLPNLEEIEH--LNWSEALKLMEKRADFQLCFVVL-EKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEKRRVEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAYKYITEADSKEVYGRHQREIVEKAKEEFQEMLFEHSELFYDLDLNATPSSDKMSEIHTVLSEEPRYKALQKLAPDRESLLLKHIGFVYHPTKETCLSG-QNCTDIKVEQLLASSLLQLDHG-RLRLYHDSTNIDKVNLFILGKDGLAQELANEIRTQST---DDEYALDGKIYELDLR--PVDAKSPYFLSQLWT--AAFKPHGCFCVFNSIESLSFIGEFIGKIRTEASQIRKDKYMANLPFTLILANQRDSISKNLPILRHQGQQLANKLQCPFVDVP--AGTYPRKFNETQIKQALRGVLESVKHNLDVVSPIPANKDLSEADLRIVMCAMCGDPFSVDLILSPFLDSHSCSAAQAGQNNSLMLDKIIGEKRRRIQITILSYHSSIGVRKDELVHGYILVYSAKRKASMGMLRAFLSEVQDTIPVQLVAVTDSQADFFENEAIKELMTEGEHIATEITAKFTALYSLSQYHRQTEVFTLFFSDVLEKKNMIE 946 HSP 2 Score: 155.606 bits (392), Expect = 1.676e-37 Identity = 78/191 (40.84%), Postives = 113/191 (59.16%), Query Frame = 2
Query: 4721 YFGKNLADIIPQCGLCPIFVEKAIKHVETNGMNTVGIYRQSGNKNDIKIIMDKFDADNNINLHELGISVHAVTGALKNFFNLLPEPLVPYEFGKKINTIMSIMDAEERLTKLGDMINQMPPVNHEVFLKTMCHLHRVSLSSSSNMMDTRNLQIVLYPTLMRPEFKSLSNISQNMNMALFVQTCIEQAERLF 5293
YFG L D++ P+FVEK ++ +E G+ T G+YR SGNK D I +FD D+NINL + ++V+AV GALK FF LP+PL+PY ++ I D ERL L +++ + PVN++VF + HL+RVS N+M NL I +PTLMRP+F++ +S V+T I+Q + F
Sbjct: 1259 YFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFF 1449 The following BLAST results are available for this feature:
BLAST of TCONS_00055104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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