TCONS_00055109 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055109
Unique Name	TCONS_00055109
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	540

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_250:217053..221360-

transcript sequence

>TCONS_00055109 ID=TCONS_00055109|Name=TCONS_00055109|organism=Clytia hemisphaerica|type=transcript|length=540bp
AttaaaaaattcttaagattcAGAAAGACCAATCTTGGATTTACAAATCA
AGGGACATGGGAGGAGTGTACCACAAAAACAAACGAAAGCATACGTGaTG
CTTATTAGGAATGGCAACAACATGGTCCAGTCCGATTCTTGAGAAAAgct
tttgcttatttttatcagactttttctcaatatttcgttgtttttttcac
acaaaaacattattgataacaatgcccaccatcaaccATGGTTCAATtgt
tctccttattgctatctaactttcatcatcaggtaatCAGCATGTGGCTT
GTTAGCACTAAAATAGCTGGCACTTCCTTTTTTTAGATTCCCTTTTAATT
CTTAGCCTGTGTCATATTTTTCCTTGCATTGCTGACCATTCTTTGAATCC
AAAACTGCTTGTCTTtggttctttttcttttgttttattttcaggagAAT
TCACGCAGAACAACTCTTGGTGGAGTATGTTACTCGACGCGATGTCTCTC
TTGGTCAAGTTTTACTGAATACAAAACAACCATGTAAGTA

Run BLAST on NCBI

transcript from alignment at scaffold_250:217053..221360-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055109 ID=TCONS_00055109|Name=TCONS_00055109|organism=Clytia hemisphaerica|type=transcript|length=4308bp|location=Sequence derived from alignment at scaffold_250:217053..221360- (Clytia hemisphaerica)
ATTAAAAAATTCTTAAGATTCAGAAAGACCAATCTTGGATTTACAAATCA
AGGTAACTGTATTATTTTCTTTGGTTTTCTCAACATATATAACTTTTTGT
TTCTTAGCAAATCGAATTTGAATTATTAGCTATCTTTAAGAAGTGGAGTT
TCAGAATTATGCTTCATGATTCAAATGATTTGATGACCACTGAACTTAAT
CAAATTCAATCGATTTGAATTAAAGATGTGATATAATTGTTCTACAGGGA
CATGGGAGGAGTGTACCACAAAAACAAACGAAAGCATACGTGGTGAGTGG
TGACAGGGAGGGGGAGGTCAAGTAGAAATGCACCAAGCAGTGGCGTGGTG
GGAAAATTTCTTTGGGGTGGCCAAGGCAAATATGGCGACGTTTTTAAAGA
TTTTTTGTGTGCGAGCGAAGCGAGCCAGAAAATTTTGAGTTTTTGAGGTG
ATGAGGGGCGCCATTTTTATTTTTTCATTTGTCAATCTTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTATTAAATTAGTGTGTGGTGATTAGTAAAAG
CTTGATTACAGGCTATTACTATTTCGTCCACGTAACTATTGGTGGTTGTC
TTCATGCTTTGAATTATTGCTAGACCAGTCAGTTTTCAAAGACAGTATTT
TTATATGAAACTGACTTTTGGTAAATTTTGAATTAAAGTGTGGTCAATCA
GGCGTCTTATATGAAACAAAAACTTATGTAAAAATGTCTATTTCAAGTTG
ATTACAATTATGGTCAGAATTGTCTTGACATTTTCAGGGCATTTTTGTGT
TTTTCAGAATTTATTGATTGTGTGAAAATGGTAACTTCAAGCTTTCTACT
TTTATAATTGGACATTTTAATTTGGAAAGGGTTAAATGGCTGTCAGGTTA
TATTTGAATTGGATAACTATTTTGTGCTTATTGTTAAGATATTATGGAGT
GGAAATTTATCAATTAAAAAACTATAAGCAATTTTCAAAAATGAAAATAA
TAGTAAGATGAGTGTTTTTCTTTTCTGGTGGTTCTTGAGGTAATAAGAGA
CTTGGATGCTGAATTTCAGCCTCAAAATATATTTCAGGATATATTTTCTT
ATATTTTGTGCAGTGTGTAGGCCTGTCGTCATGCAAAAAGAACCAATTCC
ATTGCGCAAAAGGATGTGTAAATGTTTTTCTTGAACTTTTGCACACTGAT
GCAAAATAGGGATATCTAAAATGTGACTGAGCTCGATTTTCGAAAACATA
TTGTTGTGGCCAAAAATGCGGGAAATATGCCGGAAAAAACCGTGTTCTCN
GAAAACATATTGTTGTGGTCGAAAATGCGGGAAATATGCCAGAAAAACCG
GTGTTCTGGCATTTTTCTGGAGATTTCATCAATAGCTTTTTCTAATTTTT
TTTTGCACAAAAAAGATGCTTATTAGGAATGGCAACAACATGGTCCAGTC
CGATTCTTGAGAAAAGCTTTTGCTTATTTTTATCAGACTTTTTCTCAATA
TTTCGTTGTTTTTTTCACACAAAAACATTATTGATAACAATGCCCACCAT
CAACCATGGTTCAATTGTTCTCCTTATTGCTATCTAACTTTCATCATCAG
GTAATCAGCATGTGGCTTGTTAGCACTAAAATAGCTGGCACTTCCTTTTT
TTAGATTCCCTTTTAATTCTTAGCCTGTGTCATATTTTTCCTTGCATTGC
TGACCATTCTTTGAATCCAAAACTGCTTGTCTTTGGTTCTTTTTCTTTTG
TTTTATTTTCAGGAGAATTCACGCAGAACAACTCTTGGTGGAGTATGTTA
CTCGACGCGATGTCTCTCTTGGTCAAGTTTTACTGAATACAAAACAACCA
TGTAAGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034717	XLOC_034717	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055109-exon-scaffold_250-1575043694:221309..221360	TCONS_00055109-exon-scaffold_250-1575043694:221309..221360	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1575043694:221069..221113	TCONS_00055109-exon-scaffold_250-1575043694:221069..221113	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1575043694:217053..217495	TCONS_00055109-exon-scaffold_250-1575043694:217053..217495	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1510915933:221309..221360	TCONS_00055109-exon-scaffold_250-1510915933:221309..221360	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1510915933:221069..221113	TCONS_00055109-exon-scaffold_250-1510915933:221069..221113	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1510915933:217053..217495	TCONS_00055109-exon-scaffold_250-1510915933:217053..217495	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1491911889:221309..221360	TCONS_00055109-exon-scaffold_250-1491911889:221309..221360	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1491911889:221069..221113	TCONS_00055109-exon-scaffold_250-1491911889:221069..221113	Clytia hemisphaerica	exon
TCONS_00055109-exon-scaffold_250-1491911889:217053..217495	TCONS_00055109-exon-scaffold_250-1491911889:217053..217495	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_250	supercontig	scaffold_250:217053..221360 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06147	0.888018	1.38815	2.05335	1.71859	0.844304	2.06241	3.2452	1.18542	0.952738	1.23793	1.35213	0.696929	0.85529	2.19507	2.83118	3.55807	3.54737	2.1211	1.51869	6.90869	7.2564	3.68469	6.17066	0.386708	0.427394	1.15736	2.17583	3.70767	2.62486

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055109 vs. Swiss-Prot (Human)

BLAST of TCONS_00055109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055109 (transcript) - C. hemisphaerica