TCONS_00055110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055110
Unique NameTCONS_00055110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055110 ID=TCONS_00055110|Name=TCONS_00055110|organism=Clytia hemisphaerica|type=transcript|length=263bp
ACACAGCTTCAAGagtgagtttgaaattttctacgaCTCCAAGGACATAA
TCCTGATTAAAATCATACCGCTTATGATAATGAGCATGTTGTACGATCGC
TTTGGCAATGGCATGACGAGTGCAGGTTGGTGCATCACCTTGATTGGTGG
GGTGTACTTTCCCTCCTAGTGCATTTGGATCACTCATTGTTCATACTCCA
TGTAATAATCAATAATCTAAAGTAatcatgatttttgaaatactaGAACG
AGGACAATTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_250:18666..18928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055110 ID=TCONS_00055110|Name=TCONS_00055110|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at scaffold_250:18666..18928 (Clytia hemisphaerica)
CTTTAATTGTCCTCGTTCtagtatttcaaaaatcatgatTACTTTAGATT
ATTGATTATTACATGGAGTATGAACAATGAGTGATCCAAATGCACTAGGA
GGGAAAGTACACCCCACCAATCAAGGTGATGCACCAACCTGCACTCGTCA
TGCCATTGCCAAAGCGATCGTACAACATGCTCATTATCATAAGCGGTATG
ATTTTAATCAGGATTATGTCCTTGGAGtcgtagaaaatttcaaactcact
CTTGAAGCTGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034718XLOC_034718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055110-exon-scaffold_250-1491911889:18666..18928TCONS_00055110-exon-scaffold_250-1491911889:18666..18928Clytia hemisphaericaexon
TCONS_00055110-exon-scaffold_250-1510915933:18666..18928TCONS_00055110-exon-scaffold_250-1510915933:18666..18928Clytia hemisphaericaexon
TCONS_00055110-exon-scaffold_250-1575043694:18666..18928TCONS_00055110-exon-scaffold_250-1575043694:18666..18928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:18666..18928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25508	1.83586	0.710535	0	4.23137	6.01864	19.3633	20.3936	14.2781	34.0613	51.4985	27.1661	47.9962	46.3771	65.9227	68.8331	58.8866	50.6998	52.7002	51.6566	30.3371	23.9718	12.232	20.9329	35.7095	38.4844	24.0936	28.4683	20.1991	25.5473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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