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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055113 ID=TCONS_00055113|Name=TCONS_00055113|organism=Clytia hemisphaerica|type=transcript|length=1507bp
GTCGAATAGCGCATCTTTCTGAATCAAATACATGACTTTGCCTTTATATC
GATCGTGGTTCGTTAGCTGTATCGCTTTATGTTGGAGTAAAACTGTTTTA
CCTGTACCAAAAGGTCCAAGAATCATTAGTTTGTTAAAGCGTGGATCGTT
GCTATTCAGTACTGCCATTTGTTGATTAGAATAAAATAGAATATTGTCAC
TAGTCGATACGTTTTCGATGGCATTGTGGACGTAATCCACCCAATTGGAG
CTGGTTATTGGTGCAACAAGGTCCTTCTTGGAaacatgaatcgaaaaaac
aatGATCTTCAAAAGTTTCTGAACTTGATCGAGTGGTGTTGGCTTTTGTG
CTGGCTGAAGGATTGGGAATTTGTTGAAAATACTCATCAGCCATCTTTTT
ATATCTGTTTCCATCGTTATGAAATGTTGACTGCTCATTAGAATCGGGCA
TTTGCCGGCACAAATAACCGGAAAAAATGTCCATCCCGGTTCCAGTTGAT
CTCCTAATCTTTCCTCGAATAATTGATGGTTTGATTCTAATTGCTTAAAA
ACTCGATCGTTTTTAAGTTCGCTTTTCATCTCTACGGAAATGATGAGTTT
TCTTTTCCACGAGATAATCAAAAAGTCTGCTTCTTTGTGCATTTTGTTTC
gaatatttgtcaaaaaattgacCGATGAGAGAACAACTGTGTCCTGGAGA
ATGTCATCTTCCAAAGGTAGGAGCTGGTCATAAAACCAATGCTCAAGTTG
TTCTCCCAATTCTGACAATTCTAATCCAAAAAGCCATTGAAGGTTCGAAT
CTTGCGGTGGTTTCTCTTGAACTTTCTGTTGAAGaagctttttgaaattc
tttttgctcAGAGATTCGCGTAGAAAAGTTTTGAATTCTGGTTCTGGTGA
TGTCTGTGGAATTTCATTGATGCAAGATTGAACAAAAGTTGCTAGTTCTG
ACGTAGTTGATGGAAGATTAACTTGGTCAGTTTTGAGCTCTTCGATTGTT
AAATACATAATTTTGAGATTCATCGCCCACTTATCGAAaatgtttttgtc
aatttgatCAGAGTCACTTTGTGCCTGCATCAATTCTTCTAATTCCATCG
TCAGCCAATTCTCTGGCGAATGCCCTTTCAAATTGCTCAAAAGTCTATCC
ACATCTTTCttgacaccataatcaagaATAGCTACTGATGACTTCTTTGT
ATATTGATTCGAAACAAACGTTGGAGGTATGAAGACAGCATCGTGTACGT
CCTCAATGAAAAGTGAAGAATCACCATATTCTCTTTGAAGGAGAAACATG
GCAGCTTTGATGGGGTCGTTAAACTTGAGAGTATTTCCCAAGTTGAATTG
CTTAGCTTGACGACTTGATACTGTTTGGTTGTTCCTGATGATTTGCCAGT
ACAGCGATTCATTTTGATTACACTTTGTAGGATCAATTGGCTTTGGTTGC
AATAACATGAGCTTTTGTGCCATACAGGGGATAGTCGCCATAATTTTTAT
ATACACT Run BLAST on NCBI protein sequence of TCONS_00055113-protein >TCONS_00055113-protein ID=TCONS_00055113-protein|Name=TCONS_00055113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
VYIKIMATIPCMAQKLMLLQPKPIDPTKCNQNESLYWQIIRNNQTVSSRQ
AKQFNLGNTLKFNDPIKAAMFLLQREYGDSSLFIEDVHDAVFIPPTFVSN
QYTKKSSVAILDYGVKKDVDRLLSNLKGHSPENWLTMELEELMQAQSDSD
QIDKNIFDKWAMNLKIMYLTIEELKTDQVNLPSTTSELATFVQSCINEIP
QTSPEPEFKTFLRESLSKKNFKKLLQQKVQEKPPQDSNLQWLFGLELSEL
GEQLEHWFYDQLLPLEDDILQDTVVLSSVNFLTNIRNKMHKEADFLIISW
KRKLIISVEMKSELKNDRVFKQLESNHQLFEERLGDQLEPGWTFFPVICA
GKCPILMSSQHFITMETDIKRWLMSIFNKFPILQPAQKPTPLDQVQKLLK
IIVFSIHVSKKDLVAPITSSNWVDYVHNAIENVSTSDNILFYSNQQMAVL
NSNDPRFNKLMILGPFGTGKTVLLQHKAIQLTNHDRYKGKVMYLIQKDAL
FD Run BLAST on NCBI transcript from alignment at scaffold_250:48496..50002 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055113 ID=TCONS_00055113|Name=TCONS_00055113|organism=Clytia hemisphaerica|type=transcript|length=1507bp|location=Sequence derived from alignment at scaffold_250:48496..50002 (Clytia hemisphaerica)
AGTGTATATAAAAATTATGGCGACTATCCCCTGTATGGCACAAAAGCTCA
TGTTATTGCAACCAAAGCCAATTGATCCTACAAAGTGTAATCAAAATGAA
TCGCTGTACTGGCAAATCATCAGGAACAACCAAACAGTATCAAGTCGTCA
AGCTAAGCAATTCAACTTGGGAAATACTCTCAAGTTTAACGACCCCATCA
AAGCTGCCATGTTTCTCCTTCAAAGAGAATATGGTGATTCTTCACTTTTC
ATTGAGGACGTACACGATGCTGTCTTCATACCTCCAACGTTTGTTTCGAA
TCAATATACAAAGAAGTCATCAGTAGCTATtcttgattatggtgtcaaGA
AAGATGTGGATAGACTTTTGAGCAATTTGAAAGGGCATTCGCCAGAGAAT
TGGCTGACGATGGAATTAGAAGAATTGATGCAGGCACAAAGTGACTCTGa
tcaaattgacaaaaacattTTCGATAAGTGGGCGATGAATCTCAAAATTA
TGTATTTAACAATCGAAGAGCTCAAAACTGACCAAGTTAATCTTCCATCA
ACTACGTCAGAACTAGCAACTTTTGTTCAATCTTGCATCAATGAAATTCC
ACAGACATCACCAGAACCAGAATTCAAAACTTTTCTACGCGAATCTCTga
gcaaaaagaatttcaaaaagcttCTTCAACAGAAAGTTCAAGAGAAACCA
CCGCAAGATTCGAACCTTCAATGGCTTTTTGGATTAGAATTGTCAGAATT
GGGAGAACAACTTGAGCATTGGTTTTATGACCAGCTCCTACCTTTGGAAG
ATGACATTCTCCAGGACACAGTTGTTCTCTCATCGgtcaattttttgaca
aatattcGAAACAAAATGCACAAAGAAGCAGACTTTTTGATTATCTCGTG
GAAAAGAAAACTCATCATTTCCGTAGAGATGAAAAGCGAACTTAAAAACG
ATCGAGTTTTTAAGCAATTAGAATCAAACCATCAATTATTCGAGGAAAGA
TTAGGAGATCAACTGGAACCGGGATGGACATTTTTTCCGGTTATTTGTGC
CGGCAAATGCCCGATTCTAATGAGCAGTCAACATTTCATAACGATGGAAA
CAGATATAAAAAGATGGCTGATGAGTATTTTCAACAAATTCCCAATCCTT
CAGCCAGCACAAAAGCCAACACCACTCGATCAAGTTCAGAAACTTTTGAA
GATCattgttttttcgattcatgttTCCAAGAAGGACCTTGTTGCACCAA
TAACCAGCTCCAATTGGGTGGATTACGTCCACAATGCCATCGAAAACGTA
TCGACTAGTGACAATATTCTATTTTATTCTAATCAACAAATGGCAGTACT
GAATAGCAACGATCCACGCTTTAACAAACTAATGATTCTTGGACCTTTTG
GTACAGGTAAAACAGTTTTACTCCAACATAAAGCGATACAGCTAACGAAC
CACGATCGATATAAAGGCAAAGTCATGTATTTGATTCAGAAAGATGCGCT
ATTCGAC Coding sequence (CDS) from alignment at scaffold_250:48496..50002 >TCONS_00055113 ID=TCONS_00055113|Name=TCONS_00055113|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_250:48496..50002 (Clytia hemisphaerica)
GTGTATATAAAAATTATGGCGACTATCCCCTGTATGGCACAAAAGCTCAT
GTTATTGCAACCAAAGCCAATTGATCCTACAAAGTGTAATCAAAATGAAT
CGCTGTACTGGCAAATCATCAGGAACAACCAAACAGTATCAAGTCGTCAA
GCTAAGCAATTCAACTTGGGAAATACTCTCAAGTTTAACGACCCCATCAA
AGCTGCCATGTTTCTCCTTCAAAGAGAATATGGTGATTCTTCACTTTTCA
TTGAGGACGTACACGATGCTGTCTTCATACCTCCAACGTTTGTTTCGAAT
CAATATACAAAGAAGTCATCAGTAGCTATtcttgattatggtgtcaaGAA
AGATGTGGATAGACTTTTGAGCAATTTGAAAGGGCATTCGCCAGAGAATT
GGCTGACGATGGAATTAGAAGAATTGATGCAGGCACAAAGTGACTCTGat
caaattgacaaaaacattTTCGATAAGTGGGCGATGAATCTCAAAATTAT
GTATTTAACAATCGAAGAGCTCAAAACTGACCAAGTTAATCTTCCATCAA
CTACGTCAGAACTAGCAACTTTTGTTCAATCTTGCATCAATGAAATTCCA
CAGACATCACCAGAACCAGAATTCAAAACTTTTCTACGCGAATCTCTgag
caaaaagaatttcaaaaagcttCTTCAACAGAAAGTTCAAGAGAAACCAC
CGCAAGATTCGAACCTTCAATGGCTTTTTGGATTAGAATTGTCAGAATTG
GGAGAACAACTTGAGCATTGGTTTTATGACCAGCTCCTACCTTTGGAAGA
TGACATTCTCCAGGACACAGTTGTTCTCTCATCGgtcaattttttgacaa
atattcGAAACAAAATGCACAAAGAAGCAGACTTTTTGATTATCTCGTGG
AAAAGAAAACTCATCATTTCCGTAGAGATGAAAAGCGAACTTAAAAACGA
TCGAGTTTTTAAGCAATTAGAATCAAACCATCAATTATTCGAGGAAAGAT
TAGGAGATCAACTGGAACCGGGATGGACATTTTTTCCGGTTATTTGTGCC
GGCAAATGCCCGATTCTAATGAGCAGTCAACATTTCATAACGATGGAAAC
AGATATAAAAAGATGGCTGATGAGTATTTTCAACAAATTCCCAATCCTTC
AGCCAGCACAAAAGCCAACACCACTCGATCAAGTTCAGAAACTTTTGAAG
ATCattgttttttcgattcatgttTCCAAGAAGGACCTTGTTGCACCAAT
AACCAGCTCCAATTGGGTGGATTACGTCCACAATGCCATCGAAAACGTAT
CGACTAGTGACAATATTCTATTTTATTCTAATCAACAAATGGCAGTACTG
AATAGCAACGATCCACGCTTTAACAAACTAATGATTCTTGGACCTTTTGG
TACAGGTAAAACAGTTTTACTCCAACATAAAGCGATACAGCTAACGAACC
ACGATCGATATAAAGGCAAAGTCATGTATTTGATTCAGAAAGATGCGCTA
TTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055113-exon-scaffold_250-1491911889:48496..50002 | TCONS_00055113-exon-scaffold_250-1491911889:48496..50002 | Clytia hemisphaerica | exon |
| TCONS_00055113-exon-scaffold_250-1510915933:48496..50002 | TCONS_00055113-exon-scaffold_250-1510915933:48496..50002 | Clytia hemisphaerica | exon |
| TCONS_00055113-exon-scaffold_250-1575043694:48496..50002 | TCONS_00055113-exon-scaffold_250-1575043694:48496..50002 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:48496..50002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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