TCONS_00055115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055115
Unique NameTCONS_00055115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055115 ID=TCONS_00055115|Name=TCONS_00055115|organism=Clytia hemisphaerica|type=transcript|length=291bp
caaacaattaccatggtgattatgtgcCTTGAGACgttgaatgatttttt
atgaatatgaAGTTGTTTTGATCCGCTGGGGGTTAATCACcgtggcaata
atttcaaaacgaggcaaaagatgttcgtaacgtaatttatgaaaaggtct
atttctcGTCTTAAGGATTCAAAAAGATTCTATAATGTTCACAATGTCAA
TTGACTATGATGCTAATAACGCATCCCCTCTCATATGTTTTGATATCGGA
GATTCGTATCGTATATAAAATTTCCATCCAAGAGTTATCCC
Run BLAST on NCBI

transcript from alignment at scaffold_250:126809..127099

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055115 ID=TCONS_00055115|Name=TCONS_00055115|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at scaffold_250:126809..127099 (Clytia hemisphaerica)
GGGATAACTCTTGGATGGAAATTTTATATACGATACGAATCTCCGATATC
AAAACATATGAGAGGGGATGCGTTATTAGCATCATAGTCAATTGACATTG
TGAACATTATAGAATCTTTTTGAATCCTTAAGACgagaaatagacctttt
cataaattacgttacgaacatcttttgcctcgttttgaaattattgccac
gGTGATTAACCCCCAGCGGATCAAAACAACTtcatattcataaaaaatca
ttcaacGTCTCAAGgcacataatcaccatggtaattgtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034723XLOC_034723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055115-exon-scaffold_250-1491911889:126809..127099TCONS_00055115-exon-scaffold_250-1491911889:126809..127099Clytia hemisphaericaexon
TCONS_00055115-exon-scaffold_250-1510915933:126809..127099TCONS_00055115-exon-scaffold_250-1510915933:126809..127099Clytia hemisphaericaexon
TCONS_00055115-exon-scaffold_250-1575043694:126809..127099TCONS_00055115-exon-scaffold_250-1575043694:126809..127099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:126809..127099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.420371	1.46427	1.91008	1.74401	1.37814	3.87955	3.11313	0	1.34988	3.05719	0.287097	0.286698	1.19095	0.489563	0.788063	0.32361	0.33169	0	0	0.416792	0	0.988535	0.449361	0.465325	0.826132	4.72877	1.8925	1.91386	2.92488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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