TCONS_00055116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055116
Unique NameTCONS_00055116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055116 ID=TCONS_00055116|Name=TCONS_00055116|organism=Clytia hemisphaerica|type=transcript|length=257bp
CTTGGGTAAGGCATCAGGTTACGCACACAAAGTTATACAAGGACATAAAA
AGTAAAGCCAAGTTCAGTTGTAGGTATACACAGATTATCATCTTATAATA
CTTTATTATTCAATCCATATATAAGTCCATTTCATTTTATGGATATAAAT
GTCATTAAAACTCCCACTTCTAAAGAAGGCAACTTCCAATTCATCCAACC
AGATCGATGAACACAATTGGCATTCAGCCATTGAGTGCTAGCTGACATCA
GTACCNN
Run BLAST on NCBI

transcript from alignment at scaffold_250:148911..149167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055116 ID=TCONS_00055116|Name=TCONS_00055116|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at scaffold_250:148911..149167 (Clytia hemisphaerica)
NNGGTACTGATGTCAGCTAGCACTCAATGGCTGAATGCCAATTGTGTTCA
TCGATCTGGTTGGATGAATTGGAAGTTGCCTTCTTTAGAAGTGGGAGTTT
TAATGACATTTATATCCATAAAATGAAATGGACTTATATATGGATTGAAT
AATAAAGTATTATAAGATGATAATCTGTGTATACCTACAACTGAACTTGG
CTTTACTTTTTATGTCCTTGTATAACTTTGTGTGCGTAACCTGATGCCTT
ACCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034724XLOC_034724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055116-exon-scaffold_250-1491911889:148911..149167TCONS_00055116-exon-scaffold_250-1491911889:148911..149167Clytia hemisphaericaexon
TCONS_00055116-exon-scaffold_250-1510915933:148911..149167TCONS_00055116-exon-scaffold_250-1510915933:148911..149167Clytia hemisphaericaexon
TCONS_00055116-exon-scaffold_250-1575043694:148911..149167TCONS_00055116-exon-scaffold_250-1575043694:148911..149167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:148911..149167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09848	0.975654	0	0	14.7483	0.289388	3.65517	9.52663	24.0877	28.7108	44.7025	30.4094	24.518	12.1684	11.8453	12.6146	13.9069	14.996	24.4526	32.9676	20.0398	24.0478	37.8227	32.6082	3.97302	3.15571	33.7306	23.391	9.47565	7.78573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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