TCONS_00055118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055118
Unique NameTCONS_00055118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055118 ID=TCONS_00055118|Name=TCONS_00055118|organism=Clytia hemisphaerica|type=transcript|length=214bp
TAGACTCAGACAGCAGGTCCTAATTTCAGCCCTGAATTTAGTTGCTGTTA
ATTATGAGctttttgttctttatttttagagAAGTTGTTAGCTAGAATAA
AACAAATCTCAGGCTTATTATTTTCCAATGGCAATTTGAAGAGTAGCTGA
TTGACTACTATGTCTTATATAACCAGCCCCACCAGACAGCCCATGCAGTA
ATGTCAACCGAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_250:151046..151259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055118 ID=TCONS_00055118|Name=TCONS_00055118|organism=Clytia hemisphaerica|type=transcript|length=214bp|location=Sequence derived from alignment at scaffold_250:151046..151259 (Clytia hemisphaerica)
TACTCGGTTGACATTACTGCATGGGCTGTCTGGTGGGGCTGGTTATATAA
GACATAGTAGTCAATCAGCTACTCTTCAAATTGCCATTGGAAAATAATAA
GCCTGAGATTTGTTTTATTCTAGCTAACAACTTctctaaaaataaagaac
aaaaagCTCATAATTAACAGCAACTAAATTCAGGGCTGAAATTAGGACCT
GCTGTCTGAGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034726XLOC_034726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055118-exon-scaffold_250-1491911889:151046..151259TCONS_00055118-exon-scaffold_250-1491911889:151046..151259Clytia hemisphaericaexon
TCONS_00055118-exon-scaffold_250-1510915933:151046..151259TCONS_00055118-exon-scaffold_250-1510915933:151046..151259Clytia hemisphaericaexon
TCONS_00055118-exon-scaffold_250-1575043694:151046..151259TCONS_00055118-exon-scaffold_250-1575043694:151046..151259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:151046..151259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.80993	1.95964	0.612419	0	8.96944	21.5927	7.55474	21.5752	6.37805	2.98387	0.330869	3.11161	4.68532	4.55617	0	3.6331	0.278759	6.59048	3.37491	2.09225	1.27917	0.143795	0	1.04814	27.1834	26.1056	8.46168	3.39962	7.10785	6.12946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top