TCONS_00055126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055126
Unique NameTCONS_00055126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055126 ID=TCONS_00055126|Name=TCONS_00055126|organism=Clytia hemisphaerica|type=transcript|length=476bp
ATTTGATCAGCTTTGTTTTTGCAGTTGTTGTTAACTTTATTAGGTGTAGT
TGTTGTCACCGTTGGTTTTGTGGGAAAGGATATCAGAGGgaaatttgttt
ttgtatgattaGCAAAAGATGTAACAACATTTGATTCTTTATATATTAAT
AAATAAGGCACAATATGGTCATTCACTTTACAGTTAAAATTAGGGTTGTG
GATAGGATTCACTATGGCATCGTCCACAGAAAACCACTGTTCACCATATT
TTACAGCTGATGTGTAATGGCCGCTATTTGCAGTTTCGCCATGGTGAAAG
ATGACTGCTTGTAATTGTAAAGTTCCCAATAGAATATTGTCAATTCGATT
CTCAATTGTAATTTCTGGAATTACTTTTCTACAAGTATTTGTTGCTTGAT
CAAAACGAAATACACCCAAGGAAATAATCAGATAATCAGAAACATGGAGC
AGTGTTGTTGATTTTAATGCCATCGT
Run BLAST on NCBI

protein sequence of TCONS_00055126-protein

>TCONS_00055126-protein ID=TCONS_00055126-protein|Name=TCONS_00055126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
TMALKSTTLLHVSDYLIISLGVFRFDQATNTCRKVIPEITIENRIDNILL
GTLQLQAVIFHHGETANSGHYTSAVKYGEQWFSVDDAIVNPIHNPNFNCK
VNDHIVPYLLIYKESNVVTSFANHTKTNFPLISFPTKPTVTTTTPNKVNN
NCKNKADQ
Run BLAST on NCBI

transcript from alignment at scaffold_250:246040..246515

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055126 ID=TCONS_00055126|Name=TCONS_00055126|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at scaffold_250:246040..246515 (Clytia hemisphaerica)
ACGATGGCATTAAAATCAACAACACTGCTCCATGTTTCTGATTATCTGAT
TATTTCCTTGGGTGTATTTCGTTTTGATCAAGCAACAAATACTTGTAGAA
AAGTAATTCCAGAAATTACAATTGAGAATCGAATTGACAATATTCTATTG
GGAACTTTACAATTACAAGCAGTCATCTTTCACCATGGCGAAACTGCAAA
TAGCGGCCATTACACATCAGCTGTAAAATATGGTGAACAGTGGTTTTCTG
TGGACGATGCCATAGTGAATCCTATCCACAACCCTAATTTTAACTGTAAA
GTGAATGACCATATTGTGCCTTATTTATTAATATATAAAGAATCAAATGT
TGTTACATCTTTTGCtaatcatacaaaaacaaatttcCCTCTGATATCCT
TTCCCACAAAACCAACGGTGACAACAACTACACCTAATAAAGTTAACAAC
AACTGCAAAAACAAAGCTGATCAAAT

Coding sequence (CDS) from alignment at scaffold_250:246040..246515

>TCONS_00055126 ID=TCONS_00055126|Name=TCONS_00055126|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_250:246040..246515 (Clytia hemisphaerica)
ACGATGGCATTAAAATCAACAACACTGCTCCATGTTTCTGATTATCTGAT
TATTTCCTTGGGTGTATTTCGTTTTGATCAAGCAACAAATACTTGTAGAA
AAGTAATTCCAGAAATTACAATTGAGAATCGAATTGACAATATTCTATTG
GGAACTTTACAATTACAAGCAGTCATCTTTCACCATGGCGAAACTGCAAA
TAGCGGCCATTACACATCAGCTGTAAAATATGGTGAACAGTGGTTTTCTG
TGGACGATGCCATAGTGAATCCTATCCACAACCCTAATTTTAACTGTAAA
GTGAATGACCATATTGTGCCTTATTTATTAATATATAAAGAATCAAATGT
TGTTACATCTTTTGCtaatcatacaaaaacaaatttcCCTCTGATATCCT
TTCCCACAAAACCAACGGTGACAACAACTACACCTAATAAAGTTAACAAC
AACTGCAAAAACAAAGCTGATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034734XLOC_034734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055126-exon-scaffold_250-1491911889:246040..246515TCONS_00055126-exon-scaffold_250-1491911889:246040..246515Clytia hemisphaericaexon
TCONS_00055126-exon-scaffold_250-1510915933:246040..246515TCONS_00055126-exon-scaffold_250-1510915933:246040..246515Clytia hemisphaericaexon
TCONS_00055126-exon-scaffold_250-1575043694:246040..246515TCONS_00055126-exon-scaffold_250-1575043694:246040..246515Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055126-proteinTCONS_00055126-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:246040..246515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480572	0.205524	0.218217	0.168167	0.634176	1.01473	0	0.330291	0.929933	0.785304	2.80418	1.6234	1.82229	3.12081	0.754053	0.93559	0	0.855865	0.16154	1.01404	1.8582	0	0	0.728268	1.62444	4.25413	0	0.227572	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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