TCONS_00055128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055128
Unique NameTCONS_00055128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055128 ID=TCONS_00055128|Name=TCONS_00055128|organism=Clytia hemisphaerica|type=transcript|length=393bp
CGATTCAATTGCTAGAAAAGTTATCAGGATGGGCTCCAATCTTGTCAATT
CTGACCCATATTGGAACAGATGCAAAAGAGAATTGGATGCTTTACTTTTC
TTTAGAAGATACTCAATAGGGGATTTACCAAGCTACTTTCATACTAATAG
TATGGCAGAACTCCACTGGGCTCCACTTAAACAATTTTTGGCTAAATACC
TTAGTTCTACATGTGAGATCACTTATGATaacattttaaataaattgaAT
ACAGATATGCATTATCTCAGAAGAACAGTTTTACAAAATCTGCACATTGC
CACTTTATATTTCGAGACAAGGACAATAAATTACTATAACACAGTAGCCA
AAGAGTTGTTTAACTTAACTGATTATTGGTTTCGCTTTGAATT
Run BLAST on NCBI

protein sequence of TCONS_00055128-protein

>TCONS_00055128-protein ID=TCONS_00055128-protein|Name=TCONS_00055128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
DSIARKVIRMGSNLVNSDPYWNRCKRELDALLFFRRYSIGDLPSYFHTNS
MAELHWAPLKQFLAKYLSSTCEITYDNILNKLNTDMHYLRRTVLQNLHIA
TLYFETRTINYYNTVAKELFNLTDYWFRFE
Run BLAST on NCBI

transcript from alignment at scaffold_250:250035..250427

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055128 ID=TCONS_00055128|Name=TCONS_00055128|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_250:250035..250427 (Clytia hemisphaerica)
AATTCAAAGCGAAACCAATAATCAGTTAAGTTAAACAACTCTTTGGCTAC
TGTGTTATAGTAATTTATTGTCCTTGTCTCGAAATATAAAGTGGCAATGT
GCAGATTTTGTAAAACTGTTCTTCTGAGATAATGCATATCTGTATtcaat
ttatttaaaatgttATCATAAGTGATCTCACATGTAGAACTAAGGTATTT
AGCCAAAAATTGTTTAAGTGGAGCCCAGTGGAGTTCTGCCATACTATTAG
TATGAAAGTAGCTTGGTAAATCCCCTATTGAGTATCTTCTAAAGAAAAGT
AAAGCATCCAATTCTCTTTTGCATCTGTTCCAATATGGGTCAGAATTGAC
AAGATTGGAGCCCATCCTGATAACTTTTCTAGCAATTGAATCG

Coding sequence (CDS) from alignment at scaffold_250:250035..250427

>TCONS_00055128 ID=TCONS_00055128|Name=TCONS_00055128|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_250:250035..250427 (Clytia hemisphaerica)
TTCAAAGCGAAACCAATAATCAGTTAAGTTAAACAACTCTTTGGCTACTG
TGTTATAGTAATTTATTGTCCTTGTCTCGAAATATAAAGTGGCAATGTGC
AGATTTTGTAAAACTGTTCTTCTGAGATAATGCATATCTGTATtcaattt
atttaaaatgttATCATAAGTGATCTCACATGTAGAACTAAGGTATTTAG
CCAAAAATTGTTTAAGTGGAGCCCAGTGGAGTTCTGCCATACTATTAGTA
TGAAAGTAGCTTGGTAAATCCCCTATTGAGTATCTTCTAAAGAAAAGTAA
AGCATCCAATTCTCTTTTGCATCTGTTCCAATATGGGTCAGAATTGACAA
GATTGGAGCCCATCCTGATAACTTTTCTAGCAATTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034736XLOC_034736Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055128-proteinTCONS_00055128-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055128-exon-scaffold_250-1491911889:250035..250427TCONS_00055128-exon-scaffold_250-1491911889:250035..250427Clytia hemisphaericaexon
TCONS_00055128-exon-scaffold_250-1510915933:250035..250427TCONS_00055128-exon-scaffold_250-1510915933:250035..250427Clytia hemisphaericaexon
TCONS_00055128-exon-scaffold_250-1575043694:250035..250427TCONS_00055128-exon-scaffold_250-1575043694:250035..250427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:250035..250427 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.19711e-08	0.616437	0.223096	2.14189	0.460619	1.37503	0.26059	0.986976	0.448888	0.782004	0	0	0	0	0	0	0	0	0	0	1.42108	3.23549	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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