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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055132 ID=TCONS_00055132|Name=TCONS_00055132|organism=Clytia hemisphaerica|type=transcript|length=1784bp
CGTAGATCGACATCTTACACACATCATTGCCGTCCAAAACAGAGTAAATA
CCCCTGCAGAGCTGATTGGTGTACCAGCGACCAAAATACAAAACGCAAGT
GATATCAATCTTACTAAATATATTCCAAAAATAACGGACGAGCAAAATCT
AAAAGAAGAGCTGAAGGTTTTGGTGGCTAGGGATTTAGCAGAATATGTAG
ACGAGTTGAAATGGATGAAAAAGTTCACACCAGAGGTTATAACTCACAAG
TATATGAAAGAGACAGAAGCTGTATCAACAACAtttTCTTTGGGGCCCAC
GATTTGAATGAGAACACCAGTTCTGGAATAACAAAGATATTGAGGGAGAT
ACATCAGTTTGTTCCTGGACATGACACGTCAAATATGTTAAGCATCATTG
TCATTGGTGATTTATTGACTTATGAAAGGATGTTGAATGGAATTGAACAT
CAGAAAGATGCGAGTACTGCAACTAAAGGACTGGAAGGGTTGGTGCCAGG
CATTGCTGATTTCCATACCTTAGGAAACATGTTAGAAGCACTGTGGAGCA
TTTTCTATGACACTAAATCAGCTACGGCACGCAACTTTCTAAATGCACGA
AATGTCACCAAGGAGCCAATGAAATGTGTCAATGCCTCAGAAGAAATGCA
TCTGAAGTATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttat
caaacaataaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAAC
AAGANNNNTCTGAAGTATGTTGAAGCAATCTTACTGGCAGCCTACgacct
ttttttatcaaacaataaCGATATCATTCCCAGTGAACAAACCAAAGAGA
ATTACAACAAGAATTGCGATGGTATGGTAACAACATTTTTGATGCCTGCA
TATCAAATGAAAGAGGAAATTGAATTTGGACCACACCAACAAACCAACAG
TGTACCCAACTACACAAAAAATGTCCTTGCACTCGGATACATGGTTAAAT
CGTTTATGGATGCAAGAAAGTGTGAAGACGGGGAAAGGATTATTCGTCTC
cataaatatttaattttatattttacactCACACACAAAACTAAATATGC
ATTATATAACCTTCACCTATTGGCTCCAGTTAACGACCTGTTGCCACCAG
CTTTGGCCCATGAAATTACTTGGAACAGGGTGGTCAACAATAAAGGATAT
GCAAGTTCAAATGTGGAGCTTGAAAGAGAGCTGCAGCACCGCAACAAGTg
gacaaaagaagaaattaaactATTTCGGGGAACAATAACAGAGAAATCGA
TTCTTCGAATTGGTAGCAGCTATGATATGCTCAGAAGTATTGCATCTAAC
TTTGACGAGCAGATTTCTGTCAAAGAACCATCTAGGAGGCATACCACTCC
CAGTTGGAAGGCGGACGTGCTAGAGTTGGCTGAGCAGtacaaagaaaaga
aactatttcaaaaggagaaagacaaaaaacacctacaattttttggattt
ccctATGCTCTGaacattaaaaaatttaaagattggGCCATTGAAAGTAT
CCTAAAGGCCAGCAAGAAAGGAGTTTACAGTCTACTTGAAGAGGGTGTGT
CAGACAGTTGAATAATTcttttcaaatcttcattttggGTTAATAGTTCT
CATTATTTTGTTCTCCTTTTTTATACAATTTACAaaacttttaataattt
ttagaaTCATGTTATaacaaatatttatattataatAATCTATTCTACTA
ATCAACCCATTGACAAGGTGCATTTAAGACAAAC Run BLAST on NCBI protein sequence of TCONS_00055132-protein >TCONS_00055132-protein ID=TCONS_00055132-protein|Name=TCONS_00055132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MDEKVHTRGYNSQVYERDRSCINNIFFGAHDLNENTSSGITKILREIHQF
VPGHDTSNMLSIIVIGDLLTYERMLNGIEHQKDASTATKGLEGLVPGIAD
FHTLGNMLEALWSIFYDTKSATARNFLNARNVTKEPMKCVNASEEMHLKY
VEAILLAAYDLFLSNNNDIIPSEQTKENYNKXXLKYVEAILLAAYDLFLS
NNNDIIPSEQTKENYNKNCDGMVTTFLMPAYQMKEEIEFGPHQQTNSVPN
YTKNVLALGYMVKSFMDARKCEDGERIIRLHKYLILYFTLTHKTKYALYN
LHLLAPVNDLLPPALAHEITWNRVVNNKGYASSNVELERELQHRNKWTKE
EIKLFRGTITEKSILRIGSSYDMLRSIASNFDEQISVKEPSRRHTTPSWK
ADVLELAEQYKEKKLFQKEKDKKHLQFFGFPYALNIKKFKDWAIESILKA
SKKGVYSLLEEGVSDS Run BLAST on NCBI transcript from alignment at scaffold_251:17204..19621+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055132 ID=TCONS_00055132|Name=TCONS_00055132|organism=Clytia hemisphaerica|type=transcript|length=2418bp|location=Sequence derived from alignment at scaffold_251:17204..19621+ (Clytia hemisphaerica)
CGTAGATCGACATCTTACACACATCATTGCCGTCCAAAACAGAGTAAATA
CCCCTGCAGAGCTGATTGGTGTACCAGCGACCAAAATACAAAACGCAAGT
GATATCAATCTTACTAAATATATTCCAAAAATAACGGACGAGCAAAATCT
AAAAGAAGAGCTGAAGGTTTTGGTGGCTAGGGATTTAGCAGAATATGTAG
ACGAGTTGAAATGGATGAAAAAGTTCACACCAGAGGTTATAACTCACAAG
TATATGAAAGAGACAGAAGCTGTATCAACAACAGTAAGAATCTTTTCTAA
GAGTTTTTTATTTCCATTCGCCAAGGCCATTATGTACTTTAAATGCAAAA
CAAGAATGAATCTTGGTTTTTCAAACTGTAGGAAAATAcatccaaaacaa
aatttgaaagacATGAAGAACAGAAATTAAACGCTGAATAAGACAAAGTA
GAatgcattttatttttattttacagtttTCTTTGGGGCCCACGATTTGA
ATGAGAACACCAGTTCTGGAATAACAAAGATATTGAGGGAGATACATCAG
TTTGTTCCTGGACATGACACGTCAAATATGTTAAGCATCATTGTCATTGG
TGATTTATTGACTTATGAAAGGATGTTGAATGGAATTGAACATCAGAAAG
ATGCGAGTACTGCAACTAAAGGACTGGAAGGGTTGGTGCCAGGCATTGCT
GATTTCCATACCTTAGGAAACATGTTAGAAGTGAGAGAAAAATAGTATTT
TCTTTTCAACTGTGCTGAGTATTATGCTTATTTCTTGTTGTATGACAGTC
TGTCTCAATCAATCTCAAATAGTTCAAGTTGACCCAAAGAACTAAAAATG
AGATGTctgtttttgagtaatttagttCTTTCTGCGTTTCTACTTCCTCT
ATTTTTTTGCTAGTGAAGTCTCTTAGATTAAGATTAGGATTTAAAACTGA
GATTAACTACTTGTTTTAGCCCCCAGCCAAGCAAGCAGCCCCAACTTTAA
CGTAGTAAAAAATTCCTGAGTGgtttgttcttttattttttgaggTCTAT
ACATAAAGGAGAATGAGGGTTTGGACACAATATGGTCTGGTATGGAGACC
TTTTAAAATTACACTATAGAATGTCCCTCAGAATCAAAAGATTAATCCAT
ggcaaaatttttctttcatagGCACTGTGGAGCATTTTCTATGACACTAA
ATCAGCTACGGCACGCAACTTTCTAAATGCACGAAATGTCACCAAGGAGC
CAATGAAATGTGTCAATGCCTCAGAAGAAATGCATCTGAAGTATGTTGAA
GCAATCTTACTGGCAGCCTACgacctttttttatcaaacaataaCGATAT
CATTCCCAGTGAACAAACCAAAGAGAATTACAACAAGANNNNTCTGAAGT
ATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatcaaacaat
aaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACAAGAATTG
CGATGGTATGGTAACAACATTTTTGATGCCTGCATATCAAATGAAAGAGG
AAATTGAATTTGGACCACACCAACAAACCAACAGTGTACCCAACTACACA
AAAAATGTCCTTGCACTCGGATACATGGTTAAATCGTTTATGGATGCAAG
AAAGTGTGAAGACGGGGAAAGGATTATTCGTCTCcataaatatttaattt
tatattttacactCACACACAAAACTAAATATGCATTATATAACCTTCAC
CTATTGGCTCCAGTTAACGACCTGTTGCCACCAGCTTTGGCCCATGAAAT
TACTTGGAACAGGGTGGTCAACAATAAAGGATATGCAAGTTCAAATGTGG
AGCTTGAAAGAGAGCTGCAGCACCGCAACAAGTggacaaaagaagaaatt
aaactATTTCGGGGAACAATAACAGAGAAATCGATTCTTCGAATTGGTAG
CAGCTATGATATGCTCAGAAGTATTGCATCTAACTTTGACGAGCAGATTT
CTGTCAAAGAACCATCTAGGAGGCATACCACTCCCAGTTGGAAGGCGGAC
GTGCTAGAGTTGGCTGAGCAGtacaaagaaaagaaactatttcaaaagga
gaaagacaaaaaacacctacaattttttggatttccctATGCTCTGaaca
ttaaaaaatttaaagattggGCCATTGAAAGTATCCTAAAGGCCAGCAAG
AAAGGAGTTTACAGTCTACTTGAAGAGGGTGTGTCAGACAGTTGAATAAT
TcttttcaaatcttcattttggGTTAATAGTTCTCATTATTTTGTTCTCC
TTTTTTATACAATTTACAaaacttttaataatttttagaaTCATGTTATa
acaaatatttatattataatAATCTATTCTACTAATCAACCCATTGACAA
GGTGCATTTAAGACAAAC Coding sequence (CDS) from alignment at scaffold_251:17204..19621+ >TCONS_00055132 ID=TCONS_00055132|Name=TCONS_00055132|organism=Clytia hemisphaerica|type=CDS|length=4203bp|location=Sequence derived from alignment at scaffold_251:17204..19621+ (Clytia hemisphaerica)
ATGGATGAAAAAGTTCACACCAGAGGTTATAACTCACAAGTATATGAAAG
AGACAGAAGCTGTATCAACAACAtttTCTTTGGGGCCCACGATTTGAATG
AGAACACCAGTTCTGGAATAACAAAGATATTGAGGGAGATACATCAGTTT
GTTCCTGGACATGACACGTCAAATATGTTAAGCATCATTGTCATTGGTGA
TTTATTGACTTATGAAAGGATGTTGAATGGAATTGAACATCAGAAAGATG
CGAGTACTGCAACTAAAGGACTGGAAGGGTTGGTGCCAGGCATTGCTGAT
TTCCATACCTTAGGAAACATGTTAGAAGCACTGTGGAGCATTTTCTATGA
CACTAAATCAGCTACGGCACGCAACTTTCTAAATGCACGAAATGTCACCA
AGGAGCCAATGAAATGTGTCAATGCCTCAGAAGAAATGCATCTGAAGTAT
GTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatcaaacaataa
CGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACAAGANNNNTC
TGAAGTATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatca
aacaataaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACAA
GAATTGCGATGGTATGGTAACAACATTTTTGATGCCTGCATATCAAATGA
AAGAGGAAATTGAATTTGGACCACACCAACAAACCAACAGTGTACCCAAC
TACACAAAAAATGTCCTTGCACTCGGATACATGGTTAAATCGTTTATGGA
TGCAAGAAAGTGTGAAGACGGGGAAAGGATTATTCGTCTCcataaatatt
taattttatattttacactCACACACAAAACTAAATATGCATTATATAAC
CTTCACCTATTGGCTCCAGTTAACGACCTGTTGCCACCAGCTTTGGCCCA
TGAAATTACTTGGAACAGGGTGGTCAACAATAAAGGATATGCAAGTTCAA
ATGTGGAGCTTGAAAGAGAGCTGCAGCACCGCAACAAGTggacaaaagaa
gaaattaaactATTTCGGGGAACAATAACAGAGAAATCGATTCTTCGAAT
TGGTAGCAGCTATGATATGCTCAGAAGTATTGCATCTAACTTTGACGAGC
AGATTTCTGTCAAAGAACCATCTAGGAGGCATACCACTCCCAGTTGGAAG
GCGGACGTGCTAGAGTTGGCTGAGCAGtacaaagaaaagaaactatttca
aaaggagaaagacaaaaaacacctacaattttttggatttccctATGCTC
TGaacattaaaaaatttaaagattggGCCATTGAAAGTATCCTAAAGGCC
AGCAAGAAAGGAGTTTACAGTCTACTTGAAGAGGGTGTGTCAGACAGTTG
AATGGATGAAAAAGTTCACACCAGAGGTTATAACTCACAAGTATATGAAA
GAGACAGAAGCTGTATCAACAACAtttTCTTTGGGGCCCACGATTTGAAT
GAGAACACCAGTTCTGGAATAACAAAGATATTGAGGGAGATACATCAGTT
TGTTCCTGGACATGACACGTCAAATATGTTAAGCATCATTGTCATTGGTG
ATTTATTGACTTATGAAAGGATGTTGAATGGAATTGAACATCAGAAAGAT
GCGAGTACTGCAACTAAAGGACTGGAAGGGTTGGTGCCAGGCATTGCTGA
TTTCCATACCTTAGGAAACATGTTAGAAGCACTGTGGAGCATTTTCTATG
ACACTAAATCAGCTACGGCACGCAACTTTCTAAATGCACGAAATGTCACC
AAGGAGCCAATGAAATGTGTCAATGCCTCAGAAGAAATGCATCTGAAGTA
TGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatcaaacaata
aCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACAAGANNNNT
CTGAAGTATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatc
aaacaataaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACA
AGAATTGCGATGGTATGGTAACAACATTTTTGATGCCTGCATATCAAATG
AAAGAGGAAATTGAATTTGGACCACACCAACAAACCAACAGTGTACCCAA
CTACACAAAAAATGTCCTTGCACTCGGATACATGGTTAAATCGTTTATGG
ATGCAAGAAAGTGTGAAGACGGGGAAAGGATTATTCGTCTCcataaatat
ttaattttatattttacactCACACACAAAACTAAATATGCATTATATAA
CCTTCACCTATTGGCTCCAGTTAACGACCTGTTGCCACCAGCTTTGGCCC
ATGAAATTACTTGGAACAGGGTGGTCAACAATAAAGGATATGCAAGTTCA
AATGTGGAGCTTGAAAGAGAGCTGCAGCACCGCAACAAGTggacaaaaga
agaaattaaactATTTCGGGGAACAATAACAGAGAAATCGATTCTTCGAA
TTGGTAGCAGCTATGATATGCTCAGAAGTATTGCATCTAACTTTGACGAG
CAGATTTCTGTCAAAGAACCATCTAGGAGGCATACCACTCCCAGTTGGAA
GGCGGACGTGCTAGAGTTGGCTGAGCAGtacaaagaaaagaaactatttc
aaaaggagaaagacaaaaaacacctacaattttttggatttccctATGCT
CTGaacattaaaaaatttaaagattggGCCATTGAAAGTATCCTAAAGGC
CAGCAAGAAAGGAGTTTACAGTCTACTTGAAGAGGGTGTGTCAGACAGTT
GAATGGATGAAAAAGTTCACACCAGAGGTTATAACTCACAAGTATATGAA
AGAGACAGAAGCTGTATCAACAACAtttTCTTTGGGGCCCACGATTTGAA
TGAGAACACCAGTTCTGGAATAACAAAGATATTGAGGGAGATACATCAGT
TTGTTCCTGGACATGACACGTCAAATATGTTAAGCATCATTGTCATTGGT
GATTTATTGACTTATGAAAGGATGTTGAATGGAATTGAACATCAGAAAGA
TGCGAGTACTGCAACTAAAGGACTGGAAGGGTTGGTGCCAGGCATTGCTG
ATTTCCATACCTTAGGAAACATGTTAGAAGCACTGTGGAGCATTTTCTAT
GACACTAAATCAGCTACGGCACGCAACTTTCTAAATGCACGAAATGTCAC
CAAGGAGCCAATGAAATGTGTCAATGCCTCAGAAGAAATGCATCTGAAGT
ATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttatcaaacaat
aaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAACAAGANNNN
TCTGAAGTATGTTGAAGCAATCTTACTGGCAGCCTACgacctttttttat
caaacaataaCGATATCATTCCCAGTGAACAAACCAAAGAGAATTACAAC
AAGAATTGCGATGGTATGGTAACAACATTTTTGATGCCTGCATATCAAAT
GAAAGAGGAAATTGAATTTGGACCACACCAACAAACCAACAGTGTACCCA
ACTACACAAAAAATGTCCTTGCACTCGGATACATGGTTAAATCGTTTATG
GATGCAAGAAAGTGTGAAGACGGGGAAAGGATTATTCGTCTCcataaata
tttaattttatattttacactCACACACAAAACTAAATATGCATTATATA
ACCTTCACCTATTGGCTCCAGTTAACGACCTGTTGCCACCAGCTTTGGCC
CATGAAATTACTTGGAACAGGGTGGTCAACAATAAAGGATATGCAAGTTC
AAATGTGGAGCTTGAAAGAGAGCTGCAGCACCGCAACAAGTggacaaaag
aagaaattaaactATTTCGGGGAACAATAACAGAGAAATCGATTCTTCGA
ATTGGTAGCAGCTATGATATGCTCAGAAGTATTGCATCTAACTTTGACGA
GCAGATTTCTGTCAAAGAACCATCTAGGAGGCATACCACTCCCAGTTGGA
AGGCGGACGTGCTAGAGTTGGCTGAGCAGtacaaagaaaagaaactattt
caaaaggagaaagacaaaaaacacctacaattttttggatttccctATGC
TCTGaacattaaaaaatttaaagattggGCCATTGAAAGTATCCTAAAGG
CCAGCAAGAAAGGAGTTTACAGTCTACTTGAAGAGGGTGTGTCAGACAGT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055132-exon-scaffold_251-1491911889:17204..17486 | TCONS_00055132-exon-scaffold_251-1491911889:17204..17486 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1510915933:17204..17486 | TCONS_00055132-exon-scaffold_251-1510915933:17204..17486 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1575043694:17204..17486 | TCONS_00055132-exon-scaffold_251-1575043694:17204..17486 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1491911889:17680..17933 | TCONS_00055132-exon-scaffold_251-1491911889:17680..17933 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1510915933:17680..17933 | TCONS_00055132-exon-scaffold_251-1510915933:17680..17933 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1575043694:17680..17933 | TCONS_00055132-exon-scaffold_251-1575043694:17680..17933 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1491911889:18375..19621 | TCONS_00055132-exon-scaffold_251-1491911889:18375..19621 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1510915933:18375..19621 | TCONS_00055132-exon-scaffold_251-1510915933:18375..19621 | Clytia hemisphaerica | exon |
| TCONS_00055132-exon-scaffold_251-1575043694:18375..19621 | TCONS_00055132-exon-scaffold_251-1575043694:18375..19621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:17204..19621 + |
Blast
The following BLAST results are available for this feature:
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