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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055135 ID=TCONS_00055135|Name=TCONS_00055135|organism=Clytia hemisphaerica|type=transcript|length=1835bp
CTTAGCGTGTTGTCTCATCAATTCTTTGGGTGGTTGTTTGCTCCAAATAT
CATGATAGTCAACATAGTCATCATCGTCCACCGGCAATTGTGGTGTTAAC
AAATTGTTGTTGTGGTTCCTTGTCGTCTTATGACTTCCGTATGCATCCGC
CATTACCCGGTCAACATCATGTGCAGACGGCACGTCGTAAATTTCTTGTT
GTATACCGGTGTTTCGGTATTCGCTTTGCGTGTTCTGATATTGCGAGACT
GCAGTTGGGTCGCTTCTACGACTAGATGTTGGATTGCTAGTCGGTACATC
GTAGAGTTCCTGACTTGCTCGTTTTGAAGATGAATGAGTGGAGTTGAAAC
TCGATCTATTTGACGAAGTTGCGTTATCAGTGCGTTCGAGTTGTTTAAGC
ATATCGATAAACTCGGGATTAGTGGTTGGGTCTTGATTCCTTGGTGCTGG
CACGTCATAAATCTCTTGCGACGTTGGGTAAGATTCTTTTGATTTTCGGG
CGGACTGTGGCGTACCGGGCGTACTTCGGTTTAACGGTGCGTTAGCGGTC
GCCGCCACAGATGAGGAAGGGACGTTATAAATCTCTTGTAAGCGAGTTGG
AGTGTTTTTCAAGTTCTTGGCATTGTTAGAACGAGGGCTGAACCCACGTG
GTAAAGTATGTGACATGGTGTTACTAGCCGGACTTTGTAGATGAAAGTTT
TTACGCCCTGTATTGGGTGGTCGACCGCCATTCACGTCTTTCTTTGGAAC
GTCGTAAATCTCTTGCGACGGGCCGTCCGCGGCGTCAATTCCCGTATTCG
AAGACGTAAAACTACCACGTGGTGTAGACGTGTTACTATTCAAAGGCGTT
CTCTTGATGGTGCTACTGATTGGATCCTCGTTAAAAGGAGAATCCATAAT
CTCACCCATTAGTTCGTCGACGTCGATACTGGTTCTTGATTTCGGTACAT
CATAAACCTCGTCACTGACGGCTGGAATATTATTCGGAACTCTGTACGGT
TCTGGTTGTTTTGGCGGTGCCTGTTTTCTCAGATTAGACGGCACGTCATA
AGTCTCTGTCGGCCCGTCAATGTGTTTCGGTGATACACGTTTATTGAGAT
TCGAAGGAACGTCGTACGTTTCAGACGGTTCTTCAACTCGACTACGGTTT
AATTGCGACGGAACGTCGTACGTTTCTGTCGGACCTTCATGTTGTTTACG
TGCCGATCTTTGGTTTAAATTTGAAGGGACGTCGTACGTTTCTGTCGGCC
CGGCGTCGTATTCTTTACGTCCGGTACGTGGTGAATCATAACCAGTTGGA
ATACTATTCGATTGATTCAAATTACCAGAGCTTCTATTGGAACTCCTGTT
AGATGGAATGTCGTAAATCTCTTGGGTTGTATCAAGAGTTGAATTTAAAC
TACTCGGAATATCATAAACTTCTTGACTAATCTCTACTTGttcttttcca
cttttcccTTTCAATGGTATGTCAAACATGTCCTTTATACTCAACTGCGG
TACAAAACCGGGTGTTTTAACAGGGTTGGGTAGATAGTCATAATTATTGG
GTGCTCCGCCATCGAGGGCGTCATGTCCGTCAGAATTATCATCCGTTTCG
TAGGACGCCCGTTTTTTGGTGGACGCTGATTTACGTTCGAGTTGATCTAA
TTGCATGGGATCAATGACCTGTAACCGGTTTCCCGGTACGATACCTTGTT
CTCCGTGTAGTAGACATAACCACCATCCGGTTAAACCGTCAATGTCTTTC
TCAATGACAGTAACAATGTCACCTTTCCGGATATTGAGCTCGTCCGGTGC
ATCCGCATGATTGTCATAAGCTGCCCTCGCCAGCA Run BLAST on NCBI transcript from alignment at scaffold_251:146733..148888+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055135 ID=TCONS_00055135|Name=TCONS_00055135|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at scaffold_251:146733..148888+ (Clytia hemisphaerica)
CTTAGCGTGTTGTCTCATCAATTCTTTGGGTGGTTGTTTGCTCCAAATAT
CATGATAGTCAACATAGTCATCATCGTCCACCGGCAATTGTGGTGTTAAC
AAATTGTTGTTGTGGTTCCTTGTCGTCTTATGACTTCCGTATGCATCCGC
CATTACCCGGTCAACATCATGTGCAGACGGCACATCGTAAATTTCTTGTT
GGGAAgagtttttgttgtttgttggaacgTCGTATATTTCCGAAGGGCCA
TCGTTTCTCGAAGCCTTATTATATGAAGGGATTTTGTACTGTTCAGGGGC
CGGCGAACGCCTTCTTGAAGATGATTGGGGCGTGTCGTAGATTTCCTGAC
CTCGAGGTGTTGAAGTTTGAGCTGGTGGTATAAAGTTTAGGTCGTTACCC
CCTGATAAACGATTGATTTTCGTTGAACGTCCGAGGGTTTGAGTGTTTCG
TGGAGGGGGTACATCATATAATTCTTCTTGGCTTCGGTGACTTGACGGAG
GTACGTCGTAAATTTCTTGTTGTATACCGGTGTTTCGGTATTCGCTTTGC
GTGTTCTGATATTGCGAGACTGCAGTTGGGTCGCTTCTACGACTAGATGT
TGGATTGCTAGTCGGTACATCGTAGAGTTCCTGACTTGCTCGTTTTGAAG
ATGAATGAGTGGAGTTGAAACTCGATCTATTTGACGAAGTTGCGTTATCA
GTGCGTTCGAGTTGTTTAAGCATATCGATAAACTCGGGATTAGTGGTTGG
GTCTTGATTCCTTGGTGCTGGCACGTCATAAATCTCTTGCGACGTTGGGT
AAGATTCTTTTGATTTTCGGGCGGACTGTGGCGTACCGGGCGTACTTCGG
TTTAACGGTGCGTTAGCGGTCGCCGCCACAGATGAGGAAGGGACGTTATA
AATCTCTTGTAAGCGAGTTGGAGTGTTTTTCAAGTTCTTGGCATTGTTAG
AACGAGGGCTGAACCCACGTGGTAAAGTATGTGACATGGTGTTACTAGCC
GGACTTTGTAGATGAAAGTTTTTACGCCCTGTATTGGGTGGTCGACCGCC
ATTCACGTCTTTCTTTGGAACGTCGTAAATCTCTTGCGACGGGCCGTCCG
CGGCGTCAATTCCCGTATTCGAAGACGTAAAACTACCACGTGGTGTAGAC
GTGTTACTATTCAAAGGCGTTCTCTTGATGGTGCTACTGATTGGATCCTC
GTTAAAAGGAGAATCCATAATCTCACCCATTAGTTCGTCGACGTCGATAC
TGGTTCTTGATTTCGGTACATCATAAACCTCGTCACTGACGGCTGGAATA
TTATTCGGAACTCTGTACGGTTCTGGTTGTTTTGGCGGTGCCTGTTTTCT
CAGATTAGACGGCACGTCATAAGTCTCTGTCGGCCCGTCAATGTGTTTCG
GTGATACACGTTTATTGAGATTCGAAGGAACGTCGTACGTTTCAGACGGT
TCTTCAACTCGACTACGGTTTAATTGCGACGGAACGTCGTACGTTTCTGT
CGGACCTTCATGTTGTTTACGTGCCGATCTTTGGTTTAAATTTGAAGGGA
CGTCGTACGTTTCTGTCGGCCCGGCGTCGTATTCTTTACGTCCGGTACGT
GGTGAATCATAACCAGTTGGAATACTATTCGATTGATTCAAATTACCAGA
GCTTCTATTGGAACTCCTGTTAGATGGAATGTCGTAAATCTCTTGGGTTG
TATCAAGAGTTGAATTTAAACTACTCGGAATATCATAAACTTCTTGACTA
ATCTCTACTTGttcttttccacttttcccTTTCAATGGTATGTCAAACAT
GTCCTTTATACTCAACTGCGGTACAAAACCGGGTGTTTTAACAGGGTTGG
GTAGATAGTCATAATTATTGGGTGCTCCGCCATCGAGGGCGTCATGTCCG
TCAGAATTATCATCCGTTTCGTAGGACGCCCGTTTTTTGGTGGACGCTGA
TTTACGTTCGAGTTGATCTAATTGCATGGGATCAATGACCTGTAACCGGT
TTCCCGGTACGATACCTTGTTCTCCGTGTAGTAGACATAACCACCATCCG
GTTAAACCGTCAATGTCTTTCTCAATGACAGTAACAATGTCACCTTTCCG
GATATTGAGCTCGTCCGGTGCATCCGCATGATTGTCATAAGCTGCCCTCG
CCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055135-exon-scaffold_251-1491911889:146733..146915 | TCONS_00055135-exon-scaffold_251-1491911889:146733..146915 | Clytia hemisphaerica | exon |
| TCONS_00055135-exon-scaffold_251-1510915933:146733..146915 | TCONS_00055135-exon-scaffold_251-1510915933:146733..146915 | Clytia hemisphaerica | exon |
| TCONS_00055135-exon-scaffold_251-1575043694:146733..146915 | TCONS_00055135-exon-scaffold_251-1575043694:146733..146915 | Clytia hemisphaerica | exon |
| TCONS_00055135-exon-scaffold_251-1491911889:147237..148888 | TCONS_00055135-exon-scaffold_251-1491911889:147237..148888 | Clytia hemisphaerica | exon |
| TCONS_00055135-exon-scaffold_251-1510915933:147237..148888 | TCONS_00055135-exon-scaffold_251-1510915933:147237..148888 | Clytia hemisphaerica | exon |
| TCONS_00055135-exon-scaffold_251-1575043694:147237..148888 | TCONS_00055135-exon-scaffold_251-1575043694:147237..148888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:146733..148888 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001452 | SH3_domain |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00055135 vs. Swiss-Prot (Human)
Match: BCAR1 (Breast cancer anti-estrogen resistance protein 1 OS=Homo sapiens GN=BCAR1 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 3.848e-24 Identity = 111/352 (31.53%), Postives = 146/352 (41.48%), Query Frame = -3
Query: 943 LARAAYDNHADAPDELNIRKGDIVTVIEKDIDGLTGWWLCLLHGEQGIVPGNRLQVIDPMQLDQLERKSASTKKRASYETDDNSDGHDALDGGA-------PNNYD------YL-PNPVK-------TPGFVPQLS----------------------IKDMFDIPLKGKSGKEQVEISQEVYDIPSSLNSTLDTTQEIYDI-PXXXXXXXXXXXXXXXXSIPTGYDSPRTGRKE-YDAGPTET--YDVPSNLNQRSARKQHEGPTETYDVPSQLNRSRVEEPSETYDVPSNLNKRVSPKHIDGPTETYDVPSNLRKQAPPKQPEP-YRVPNNI-------PAVSDEVYDVP 1833
LA+A YDN A++PDEL+ RKGDI+TV+E+D GL GWWLC LHG QGIVPGNRL+++ M ++K A G A A PN Y YL P P K PG PQ D++ +P G G +Q++Y +P S D IY + PS + + +PT R G+ Y+A E YD+P +L GP + YDVP + E YD P K P D E YDVP ++ K PP Y VP ++ P + +E YDVP
Sbjct: 7 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGM----YDKKPAGPGPGPPATPAQPQPGLHAPAPPASQYTPMLPNTYQPQPDSVYLVPTPSKAQQGLYQVPGPSPQFQSPPAKQTSTFSKQTPHHPFPSPATDLYQVP-PGPGGP-----AQDIYQVPPSAGMGHD----IYQVPPSMDTRSWEGTKPPAKVVVPT-----RVGQGYVYEAAQPEQDEYDIPRHLLA-------PGPQDIYDVPPVRGLLPSQYGQEVYDTPPMAVK--GPNGRDPLLEVYDVPPSVEKGLPPSNHHAVYDVPPSVSKDVPDGPLLREETYDVP 330
The following BLAST results are available for this feature:
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