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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055136 ID=TCONS_00055136|Name=TCONS_00055136|organism=Clytia hemisphaerica|type=transcript|length=1434bp
aaaaagttatttgaaacaaattttcaatcaaaatttttcaaacttcagAT
TTAACTAAGAagcaaaatttgttaaaaactagtttcaaaatggATCGTCG
GGtcacttttttaaaatttttcggaATAATCTCAATAACATTTGCAATCA
GATACGAGCTGAttggtcaaaacaaaaaacccAACAAACCACCATACAGC
ATTGTCAATGTCAAGTTTGAGCaacattgtttttcaaaatgtcatcaCGA
TGAAAAATGTGCATCTTTTCTCATCCAGACAACATCCAAAGACAACCCAA
TCACTTGTCATTTTTATAACACAACTACTACCAATTTGATCGAGTCACAA
ACTGCGCTTCAAGGAACCAAATTATACACAGATATTCAAGACTGTAGAGA
TCTGTACCATCTCGGATACAAAGCTTCTGGTATCTACTCTCTCAATCTAC
CGGGAGGGGTAGGAACGAAAGATGTCAGATGTGATATGGAGAATCGAGGA
GGTGGCTGGATGGTTTTCACTTATCGAATGATCGGACAACACGACTGGAA
TGCTGATtgggaaacttataaaaacggATTCGGCGAACATCCTGGTGACT
TTTATATCGGCAACGAAATACTACACAAAATAACGACATCGGGAGATTAC
GAGTTTTATTACATCTCCGAAGACTTGGAAACTGGACAAAAATATAATGG
TTGGTATGAACATTTCTACATCGAAAGTGAATCCGATTTATACCGATTAC
GTTTATTGGGAAACTCTGAAGGAACCGTAAATACACTGAATATTCACAAC
AACAGAGCATTTTCCACCATTGATAGGGACAATGATAACCATGAAACCAC
ATTTTGTGCTCGAGACACTCGGAAAGGCGCTAATTGGTGGTATCGGTGTG
GTCAGTTTTCCCCTTTCGGTCGATTTCATGACACAACTAGTGCGCATGTT
TGTATGGGGGTTGAAACAATTCcgaaaaaatgctcaaaatattttcaaat
gatgTTTAGAAGGCGATGAGCTGGtagaatttcttttctttttttaattt
aaaattgtattgTATTATTATTAATAATGATGATTGGGCttaccccactg
ttgaggatactGATTtttcgaaccccctggatatcctactttattaggaT
ATCCACTCTTGAAAATATGCTCAACTCCCtcgatatcctctcttataaag
gaTGCTTTCCcttggatatcgtatttttttacatgaaaagacactttacc
ctctggatatccagggggttacttgaaaagacactttaccctcTGGATAT
CCGCTCGCTtatagatatttaaccccctggatatccacttttacCGCACG
ATAATCTTTTCGCCGTTTTTTTGCTGCACATTTAATCGATCTGTCCAcac
caagaccggtctcATATCATCGAGCACTTTTGGG Run BLAST on NCBI protein sequence of TCONS_00055136-protein >TCONS_00055136-protein ID=TCONS_00055136-protein|Name=TCONS_00055136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MDRRVTFLKFFGIISITFAIRYELIGQNKKPNKPPYSIVNVKFEQHCFSK
CHHDEKCASFLIQTTSKDNPITCHFYNTTTTNLIESQTALQGTKLYTDIQ
DCRDLYHLGYKASGIYSLNLPGGVGTKDVRCDMENRGGGWMVFTYRMIGQ
HDWNADWETYKNGFGEHPGDFYIGNEILHKITTSGDYEFYYISEDLETGQ
KYNGWYEHFYIESESDLYRLRLLGNSEGTVNTLNIHNNRAFSTIDRDNDN
HETTFCARDTRKGANWWYRCGQFSPFGRFHDTTSAHVCMGVETIPKKCSK
YFQMMFRRR Run BLAST on NCBI transcript from alignment at scaffold_251:201983..203447+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055136 ID=TCONS_00055136|Name=TCONS_00055136|organism=Clytia hemisphaerica|type=transcript|length=1465bp|location=Sequence derived from alignment at scaffold_251:201983..203447+ (Clytia hemisphaerica)
aaaaagttatttgaaacaaattttcaatcaaaatttttcaaacttcagAT
TTAACTAAGAagcaaaatttgttaaaaactagtttcaaaatggATCGTCG
GGtcacttttttaaaatttttcggaATAATCTCAATAACATTTGCAATCA
GATACGAGCTGAttggtcaaaacaaaaaacccAACAAACCACCATACAGC
ATTGTCAATGTCAAGTTTGAGCaacattgtttttcaaaatgtcatcaCGA
TGAAAAATGTGCATCTTTTCTCATCCAGACAACATCCAAAGACAACCCAA
TCACTTGTCATTTTTATAACACAACTACTACCAATTTGATCGAGTCACAA
ACTGCGCTTCAAGGAACCAAATTATACACAGATATTCAAGACTGTAGAGA
TCTGTACCATCTCGGATACAAAGCTTCTGGTATCTACTCTCTCAATCTAC
CGGGAGGGGTAGGAACGAAAGATGTCAGATGTGATATGGAGAATCGAGGA
GGTGGCTGGATGGTTTTCACTTATCGAATGATCGGACAACACGACTGGAA
TGCTGATtgggaaacttataaaaacggATTCGGCGAACATCCTGGTGACT
TTTATATCGGCAACGAAATACTACACAAAATAACGACATCGGGAGATTAC
GAGTTTTATTACATCTCCGAAGACTTGGAAACTGGACAAAAATATAATGG
TTGGTATGAACATTTCTACATCGAAAGTGAATCCGATTTATACCGATTAC
GTTTATTGGGAAACTCTGAAGGAACCGTAAATACACTGAATATTCACAAC
AACAGAGCATTTTCCACCATTGATAGGGACAATGATAACCATGAAACCAC
ATTTTGTGCTCGAGACACTCGGAAAGGCGCTAATTGGTGGTATCGGTGTG
GTCAGTTTTCCCCTTTCGGTCGATTTCATGACACAACTAGTGCGCATGTT
TGTATGGGGGTTGAAACAATTCcgaaaaaatgctcaaaatattttcaaat
gatgTTTAGAAGGCGATGAGCTGGtagaatttcttttctttttttaattt
aaaattgtattgTATTATTATTAATAATGATGATTGGGCttaccccactg
ttgaggatactGATTtttcgaaccccctggatatcctactttattaggaT
ATCCACTCTTGAAAATATGCTCAACTCCCtcgatatcctctcttataaag
gaTGCTTTCCcttggatatcgtatttttttacatgaaaagacactttacc
ctctggatatccagggggttacttgaaaagacactttaccctcTGGATAT
CCGCTCGCTtatagatatttaaccccctggatatccacttttacCGCACG
ATAATCTTTTCGCCGTTTTTTTGCTGCACATTTAATCGATCTGTCCAcac
caagaccggtctcatttttaatgtacaAATTGTTGGGGGGTCACATATCA
TCGAGCACTTTTGGG Coding sequence (CDS) from alignment at scaffold_251:201983..203447+ >TCONS_00055136 ID=TCONS_00055136|Name=TCONS_00055136|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_251:201983..203447+ (Clytia hemisphaerica)
atggATCGTCGGGtcacttttttaaaatttttcggaATAATCTCAATAAC
ATTTGCAATCAGATACGAGCTGAttggtcaaaacaaaaaacccAACAAAC
CACCATACAGCATTGTCAATGTCAAGTTTGAGCaacattgtttttcaaaa
tgtcatcaCGATGAAAAATGTGCATCTTTTCTCATCCAGACAACATCCAA
AGACAACCCAATCACTTGTCATTTTTATAACACAACTACTACCAATTTGA
TCGAGTCACAAACTGCGCTTCAAGGAACCAAATTATACACAGATATTCAA
GACTGTAGAGATCTGTACCATCTCGGATACAAAGCTTCTGGTATCTACTC
TCTCAATCTACCGGGAGGGGTAGGAACGAAAGATGTCAGATGTGATATGG
AGAATCGAGGAGGTGGCTGGATGGTTTTCACTTATCGAATGATCGGACAA
CACGACTGGAATGCTGATtgggaaacttataaaaacggATTCGGCGAACA
TCCTGGTGACTTTTATATCGGCAACGAAATACTACACAAAATAACGACAT
CGGGAGATTACGAGTTTTATTACATCTCCGAAGACTTGGAAACTGGACAA
AAATATAATGGTTGGTATGAACATTTCTACATCGAAAGTGAATCCGATTT
ATACCGATTACGTTTATTGGGAAACTCTGAAGGAACCGTAAATACACTGA
ATATTCACAACAACAGAGCATTTTCCACCATTGATAGGGACAATGATAAC
CATGAAACCACATTTTGTGCTCGAGACACTCGGAAAGGCGCTAATTGGTG
GTATCGGTGTGGTCAGTTTTCCCCTTTCGGTCGATTTCATGACACAACTA
GTGCGCATGTTTGTATGGGGGTTGAAACAATTCcgaaaaaatgctcaaaa
tattttcaaatgatgTTTAGAAGGCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055136-exon-scaffold_251-1491911889:201983..203395 | TCONS_00055136-exon-scaffold_251-1491911889:201983..203395 | Clytia hemisphaerica | exon |
| TCONS_00055136-exon-scaffold_251-1510915933:201983..203395 | TCONS_00055136-exon-scaffold_251-1510915933:201983..203395 | Clytia hemisphaerica | exon |
| TCONS_00055136-exon-scaffold_251-1575043694:201983..203395 | TCONS_00055136-exon-scaffold_251-1575043694:201983..203395 | Clytia hemisphaerica | exon |
| TCONS_00055136-exon-scaffold_251-1491911889:203427..203447 | TCONS_00055136-exon-scaffold_251-1491911889:203427..203447 | Clytia hemisphaerica | exon |
| TCONS_00055136-exon-scaffold_251-1510915933:203427..203447 | TCONS_00055136-exon-scaffold_251-1510915933:203427..203447 | Clytia hemisphaerica | exon |
| TCONS_00055136-exon-scaffold_251-1575043694:203427..203447 | TCONS_00055136-exon-scaffold_251-1575043694:203427..203447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:201983..203447 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055136 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4) HSP 1 Score: 117.857 bits (294), Expect = 1.058e-27 Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 3
Query: 387 QDCRDLYHLGYKASGIYSLNLPGGVGTK-DVRCDMENRGGGWMVFTYRMIGQHDWNADWETYKNGFGEHPGDFYIGNEILHKITTSGDYEFYYISEDLETG-QKYNGWYEHFYIESESDLYRLRLLGNSEGTVNTLNIHNNRAFSTIDRDNDNHETTFCARDTRKGANWWYRCGQFSPFGRFHDTTSAH 947
+DC + G AS ++ L G +V CDME GGGW+VF RM GQ D+ DWE Y +GFG G+F++GNE LH +T +GDY + DL G + Y+ F+++S ++ YRL L G ++++ H+ FS DRD N CA R GA WWYR ++ + +T H
Sbjct: 4026 RDCGEEMQNGAGASRTSTIFLNGNRERPLNVFCDMETDGGGWLVFQRRMDGQTDFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDYS---MRVDLRAGDEAVFAQYDSFHVDSAAEYYRLHLEGYHGTAGDSMSYHSGSVFSARDRD-PNSLLISCAVSYR-GA-WWYRNCHYANLNGLYGSTVDH 4208
The following BLAST results are available for this feature:
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