TCONS_00055141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055141
Unique NameTCONS_00055141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055141 ID=TCONS_00055141|Name=TCONS_00055141|organism=Clytia hemisphaerica|type=transcript|length=1138bp
TTTTGTTTTTATCTGTTCACCCACACAATTGATATCAAATTGGATTATCA
TTTTAGATATCTAGCAATTTTTAGAACATTTGAACAACTTACAGGAAAGG
CAGAATGGACGAGAGTAAAGACATACAAGAATATCATAGCGAGCCATTGG
AGAGCAAATTCATGGCTCCTTTTGCAAACATACCTTACGTTTCTAATGTG
CATTACGCTCGACCCTCCGATGTTTTTATACCAAAAggttattttaaaaa
cattgaaaatatcaaaaatttcgaGTTTTTTGAAGATGATACAGTTATAT
GTGGATTTCTTAAAACAGGTACGAATTGGTGCGAAAGGATTGTTTGGGCA
CTCCGTAATGATATCAAATTGAACATTCAACACGCACCCCCTGTATCAGT
TTTCGGCATGGTTATGGGTATAGGAGATTCCGATAGTGACAACAACAAAG
CTAACGATGAGATTTTTTCGTCCATGAAACGACCACGTGTTATCAAAATG
AATCTTACATATGAATTATTACCAAGACAATTTCAACAAAAGCAACCTAA
GATGATTTACATGGTTCGAAACCCAAGAGATGTTTGCCAATCCCTTCACA
GTCAATTCTATACACTTCACGATGGCTTTTCTGGATCTTTACAAGATGTT
GTTAATCTCATGACCGACGATGCTGGATATTATTCTGGTCCGTTTTTTAA
ACATGTTTTGGGATACTGGAAACAACGCTCTTATGAAAATATACTCATCA
TTTTTTAcgaagaaatgaaaaaagatttatcagGTCATATCAAGAAGATT
GCTGATTTCTTAGACATTGAAATTTCAGATGAGGAAGTGTCAAATCTGGC
CAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTC
CCTTCCATGCAAAGCAGgaagGTCATAGTGCAACAGTCTTTGCAGCTCAC
AAGGGAAAGACAATGTTTAACAAGGGACAAGCTGGATCGTGGAAGGCTCT
GTTTACATCAGAGATGACAAAACAAATGGAAGAATGGGAATCAAAATGGT
TGACAGATACTGATCTTAAATTGATTTATGAATAGTATTGGAGTATCGAA
ACATGTAAAATGAGAGTTAAATAGAATTTTGAAACGAG
Run BLAST on NCBI

transcript from alignment at scaffold_251:255517..258476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055141 ID=TCONS_00055141|Name=TCONS_00055141|organism=Clytia hemisphaerica|type=transcript|length=2960bp|location=Sequence derived from alignment at scaffold_251:255517..258476+ (Clytia hemisphaerica)
TTTTGTTTTTATCTGTTCACCCACACAATTGATATCAAATTGGATTATCA
TTTTAGATATCTAGCAATTTTTAGAACATTTGAACAACTTACAGGAAAGG
CAGAATGGACGAGAGTAAAGACATACAAGAATATCATAGCGAGCCATTGG
AGAGCAAATTCATGGCTCCTTTTGCAAACATACCTTACGTTTCTAATGTG
CATTACGCTCGACCCTCCGATGTTTTTATACCAAAAggttattttaaaaa
cattgaaaatatcaaaaatttcgaGTTTTTTGAAGATGATACAGTTATAT
GTGGATTTCTTAAAACAGGTAGCGTTAGtattaaacgttttttttttttt
gtacatGTGTATATTTTGCATTgatatttccatttttttataCCTTCTGG
ACGTGGGTTTCACCCCTTGACAATATAATCTTATACCTCATTTTTACAGT
GTTTTTGTTCGTGAAGAGTCATTTTTCGCTAATTTCGATCATTCacacga
aaaataaaaatccgATATCTGGCGAAAATCTCAAggggaaatgaaaaaaa
tcgaaaaaaaagatACTGACTGAGCGGTTTAGAccaagaaaaactttgaa
gtcttattttgagaaaatttatcGGCTTAAGGTACTCTGAAGCTGTCGAG
TTGTCGAGGTAGGAAATTATGTAAGTTCAGGTTCTCGTTTTGAAGTTCAC
ACTAATTAGACAGTTGTCGATGAAAGACTTGAACCTGGAGACTCTCTATA
GAAACATTAATGTAATGATGTTTTATCGATAATTTTTAGGTACGAATTGG
TGCGAAAGGATTGTTTGGGCACTCCGTAATGATATCAAATTGAACATTCA
ACACGCACCCCCTGTATCAGTTTTCGGGTAAGTGAGTGTGTTGCatgtac
cagacgaccacggtTTTTCCCTCGACACCGAGTAATCAAAAAGtcgcgtg
ttgggatagagaAAGGTTAGTGAATGTACCAAAGTATGTAGCCCAATCGG
CGGTAAATTTTGTCTCTGGTGGGAAAAACACCCTACAATTTCCGCCCTAC
TGGAAACTTTTGCGTATtctaacgtttttcagaatttaaagatgGGGAGA
AAATTGCAGTTTGCAGGCTTCCAGGCTTTATTCTCAGCTTTATTGggaca
tttttgagcttttagatcctaaTATCCTCAGGTCCTAAGTCTAATGATTC
GGAGTtgaaactctactttccaaccgtacttaaaaaagcacttaaaaatc
acttgcggatTTCaaatttgagggaattccccttttgtgtcAAATATTAC
GGTGGGGATTGTGGGGGAGCAAGCAAACTAAAACATCTTTCAATATCACA
GCATGGTTATGGGTATAGGAGATTCCGATAGTGACAACAACAAAGCTAAC
GATGAGATTTTTTCGTCCATGAAACGACCACGTGTTATCAAAATGAATCT
TACATATGAATTATTACCAAGACAATTTCAACAAAAGCAACCTAAGGTAT
TTATAAATACTCTTTCTCACCTGAAAACATCAATAGAACCTGATAGAGCC
ATATTTTATAATAAGGCTAAAATAAGATGATGTTGGAAATTTTCATACTT
AACAAAATATAGCAAACAAAATAGATCAATAGACGATATATTGGCctcac
atgaaaactcagatttggcCCCCGAAAATTCTCCAcgatgctttgtgcgg
aaaaattTCACCATGAactttttccgcgcaaagcattgtagGCAATTTTC
GTCAAATCATTTCTACCTCCATGGTCAAAtatgagttttcacgttaagcc
aaTATATCGTCTATTGATCTATTTTGTTTGCTATATTTTGTCAGGTATGA
AAATTTCCAACATTGCCTTATTTTAGCCTTATTTCATTTGGTTAcgtAGA
AACCATCAATCGATagaatctaaaaattatatCGTCTATATTACTAGGCT
AATCAAATTATACTCAATACCAAGGAATAAATTCACTCAATCAATTTAAG
AATTTCCGTAGATAACGGGTCTGTTTACATACAAGTCCGATTACAGAAAC
CCAAATATTTGCCCTCCTCCTCCCCTCCCTCCCATATTTCATTACAAATC
ATCGGGAAACATCATTCTTTTCATATCACCAATAGATGATTTACATGGTT
CGAAACCCAAGAGATGTTTGCCAATCCCTTCACAGTCAATTCTATACACT
TCACGATGGCTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCG
ACGATGCTGGATATTATTCTGGTCCGTTTTTTAAACATGTTTTGGGATAC
TGGAAACAACGCTCTTATGAAAATATACTCATCATTTTTTAcgaagaaat
gaaaaaagatttatcagGTCATATCAAGAAGATTGCTGATTTCTTAGACA
TTGAAATTTCAGATGAGGAAGTGTCAAATCTGGCCAAACATTTTTCCTTT
GATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCA
GGTCAGTGGTcataaatttttaaaacctttgCTGAAATTGCAGATGGAAA
AACAATTTAGCACAATCAAATCCTAATTTAATTAGTATAATAAGGCGAAG
CAGTGGAGTAGATATCCACCTTCGTTTTCATGTAGAAGGTCAGGTTTTGA
TTCCCATTCAGTGCAATAAATGGTTTGACCAGTGAATACTCCTTTATCCT
ATTTCTCCAGTTTCATAATAccagttttatatttttcaggaagGTCATAG
TGCAACAGTCTTTGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGAC
AAGCTGGATCGTGGAAGGCTCTGTTTACATCAGAGATGACAAAACAAATG
GAAGAATGGGAATCAAAATGGTTGACAGATACTGATCTTAAATTGATTTA
TGAATAGTATTGGAGTATCGAAACATGTAAAATGAGAGTTAAATAGAATT
TTGAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034746XLOC_034746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055141-exon-scaffold_251-1491911889:255517..255834TCONS_00055141-exon-scaffold_251-1491911889:255517..255834Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1510915933:255517..255834TCONS_00055141-exon-scaffold_251-1510915933:255517..255834Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1575043694:255517..255834TCONS_00055141-exon-scaffold_251-1575043694:255517..255834Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1491911889:256306..256393TCONS_00055141-exon-scaffold_251-1491911889:256306..256393Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1510915933:256306..256393TCONS_00055141-exon-scaffold_251-1510915933:256306..256393Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1575043694:256306..256393TCONS_00055141-exon-scaffold_251-1575043694:256306..256393Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1491911889:256868..257012TCONS_00055141-exon-scaffold_251-1491911889:256868..257012Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1510915933:256868..257012TCONS_00055141-exon-scaffold_251-1510915933:256868..257012Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1575043694:256868..257012TCONS_00055141-exon-scaffold_251-1575043694:256868..257012Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1491911889:257652..258017TCONS_00055141-exon-scaffold_251-1491911889:257652..258017Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1510915933:257652..258017TCONS_00055141-exon-scaffold_251-1510915933:257652..258017Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1575043694:257652..258017TCONS_00055141-exon-scaffold_251-1575043694:257652..258017Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1491911889:258256..258476TCONS_00055141-exon-scaffold_251-1491911889:258256..258476Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1510915933:258256..258476TCONS_00055141-exon-scaffold_251-1510915933:258256..258476Clytia hemisphaericaexon
TCONS_00055141-exon-scaffold_251-1575043694:258256..258476TCONS_00055141-exon-scaffold_251-1575043694:258256..258476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:255517..258476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.77091	3.81572	1.75845	2.09645	0.500443	0	1.18941	1.03621	2.35035	1.42921	1.76128	1.83038	1.38947	1.41814	0.957574	0.730145	0.612103	0.407524	0.897146	0.532435	2.24029	2.17295	5.30563	7.89209	0	0.230868	62.8141	85.2465	1.03104	1.81685
Blast
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BLAST of TCONS_00055141 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.026e-26
Identity = 78/264 (29.55%), Postives = 121/264 (45.83%), Query Frame = 3 
Query:  237 GYFKNIENIKNFEFFEDDTVICGFLKTGTNWCERIVWALRNDIKLNIQH----APPVSVFGMVM-GIGDSDSDNNKANDEIFSSMKRPRVIKMNLTYELLPRQFQQKQPKMIYMVRNPRDVCQSL-HSQFYTLHDGFSGSLQDVVN-LMTDDAGYYSGPFFKHVLGYWKQRSYENILIIFYEEMKKDLSGHIKKIADFLDIEISDEEVSNLAKHFSFDSMKRKAEQMIPFHAKQEGHSATVFAAHKGKTMFNKGQAGSWKALFT 1007
             +  N E I+ F    DD VI  + K+GT W   I+  + ND  +           V +  M + G+  S  +  + N         PR++K +L  +LLP+ F +   KMIY+ RN +DV  S  H         F G+ ++ +   +T    Y  G +F HV  +WK++    IL ++YE+MK++    IKKI  FL+  ++DE +  +  H SF+ MK     ++ +      H  T    H       KG AG WK  FT
Sbjct:   23 AFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEIIDMILNDGDIEKCKRGFITEKVPMLEMTLPGLRTSGIEQLEKN-------PSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVAY--GSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNP--LVNY-----THLPTTVMDHSKSPFMRKGTAGDWKNYFT 270
The following BLAST results are available for this feature:
BLAST of TCONS_00055141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1B11.026e-2629.55Sulfotransferase family cytosolic 1B member 1 OS=H... [more]
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