TCONS_00055144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055144
Unique NameTCONS_00055144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055144 ID=TCONS_00055144|Name=TCONS_00055144|organism=Clytia hemisphaerica|type=transcript|length=925bp
TGTTTTTATACCGAAAggctattttcaaaacattgaaaatattaaaaatt
tcgaattttttgaaGATGATACAGTTATATGTGGATTTCTTAAAACAGGT
ACGAATTGGTGCGAAAGGATTGTTTGGGCTCTTCGTAATGATATCAAATT
GAACATTCAACATGCACCCCCTGTATCAGTTTTCGGCATTGTTATGGGTA
TAGGAGATTTCGATACTGACAACAACAAAGCTAACGATAAGATTTTTTCG
TCGATGAAGCGACCACGTGTTATCAAAATGCATCTTCCATATGAATTATT
GCCAAAACAGTTTCAACAAAAGCAACCTAAGATGATTTACATGCTTCGAA
ACCCAAATGATGTTTGCCAATCCCTTCACAGTCACTTCTATACACTCCAA
GATGGCTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCGATGA
TGCAGGATATTATTCTGGTCCATTTTTTAGACATGTTTTGGGATACTGGA
AGCGACGCTCTCATGAAAATATACTCATCATTTTTTAcgaagaaatgaaa
aaagatttatcagGTCATATCAAGAAGATTGCTAATTTCTTAGACATTGA
AATTTCAGATGAAGAAGTTTCAAATCTGGCCAAACATTTTTCCTTTGATT
CGATGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGGAT
GGACATAGTGCAACTGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAA
CAAGGGAAAAGTTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACAA
AACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATCATGATCTTAAA
TTCATTTATGAATAGTATTgtaatcccggggggggggtactacccttgtc
gaccgacgggggggctccgccgagg
Run BLAST on NCBI

transcript from alignment at scaffold_251:261389..266490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055144 ID=TCONS_00055144|Name=TCONS_00055144|organism=Clytia hemisphaerica|type=transcript|length=5102bp|location=Sequence derived from alignment at scaffold_251:261389..266490+ (Clytia hemisphaerica)
TGTTTTTATACCGAAAggctattttcaaaacattgaaaatattaaaaatt
tcgaattttttgaaGATGATACAGTTATATGTGGATTTCTTAAAACAGGT
AGCTTTAGTATTtaacgtttttttttgtttgcacATATTAAGCATTGATA
TTTCGATAAAAATATCGCTTCTGGACGTGTGTTTCACCTCTTGACAATAC
AATCTTCTACCCCCTTTGCACAGTGTTTTTGTTCGTGAAGAGCCACTTTT
CGCCAATTTAGAAGATTTCCTCGAAAAATAGAAATCCAATTTTTGGCGAA
ACTctcaagaaaaaatgaaagaaatcgaTTATAAAGAGACTGATTGAGCA
ATTCAGACCAAGAGAAACTGTGAAGtcttatttttgagaaaatttattCG
CTTAAGCAAGGGACTCTGAAGCTGTCGAGCTGTTAAGGTAGGAAATGTTA
TAATTTCAGGTTATCATACTAAAGCTCACACTGCTTAGACAGTTGTCGAT
GAAAGACTTGAACATGGAGACTCTCTATAGAAACGTTAATGTAATGATGT
TTTATCGATAATTTTTAGGTACGAATTGGTGCGAAAGGATTGTTTGGGCT
CTTCGTAATGATATCAAATTGAACATTCAACATGCACCCCCTGTATCAGT
TTTCGGGTAAGTGAATGTATTGCCTGCAtcagacgaccacggcttttcCC
TCAACACAATCGTTtgttgggatagagataggTTAGTGAATGTACCAAAG
TATGTAGCCCAATCGGCGGTAAAATTTGTCTCAGGTGGGAAAAGACTCTA
CAATTTCCGCCCTACTGCAATTTTTTgcgtattttaacgtttttcagaat
ttaaagatcgggagaaaattgcagtttcagtacttccactttgtttcatt
ggatttttcgatttgtgAGGGGTTAGGTGGCTTCCAGGCTTTATTCTCAG
CTTTATTGGGACAGTTtcgagcttttagatcctgagatccttaGGTGCTT
Ctgaagtcttaagtctcatgttaaaactcaaagttaaaactctactttcc
aaccgtactttaaagcacttaaaaatgacttacggttttcaaatttgagg
gaattccccttttgtgtcAAATATTACGTCGGGGATTGTGGGGGAGCAAG
CAAAGTAAAACAACGGTCGCCCTGTTTTTTCATCCCAATCTAAGAcgaac
aaaatatttgaaacatatGATTGTAAAAAGCTATTACCCAAATAGGGGCC
AAATAGTAATAGAAGACAAAGGAGATGTTTTACATAGTTGCCACTCTCGC
ATTCGATGTTCAAGGGGTCAAGAATTTGCTTCAAGTCAGAGAAATACTTG
AATTAGAGAGGACTTTGTATGAATTTCCACCAGAGGGAACCAATGGTTTA
GTTCTGATTACAGAtaaattcgaattaaagaggttcgaattagaaaaaTA
TGACAATAGGAAAATAATAGATAGAGAGTTGCCCTGGTTCAGTAAATTTT
GTAATCTAAACTTTCCAGAAGTTTAAAAGTTTCCCATACATCAAGCACTG
TCTTACCAAAGAATTATCATCTTTCAATATCACAGCATTGTTATGGGTAT
AGGAGATTTCGATACTGACAACAACAAAGCTAACGATAAGATTTTTTCGT
CGATGAAGCGACCACGTGTTATCAAAATGCATCTTCCATATGAATTATTG
CCAAAACAGTTTCAACAAAAGCAACCTAAGGTATTTGTCTCTTTTTCACC
TGCAAACATCAATAGAATCTGATAAAGCAATTTCAAAATAAGGCTAAAAT
AGGGCGATGTTGGAAATTTTCATACTTGGTAATATATAGCAAACAAAATA
AATCAATTACAAACTATACTCACTACCTGAGTGcacgtttatcgtttcgt
agtactctacgaaaaatcaataaaaaaatttctgtaGATAATGGGACTGT
TTACATACCAGTCAGATTACAGAAACCCAAAAATTTGACGTAACTAAACG
AAAGCATTTTTCTCTAGTgaccgtagtgtagtggtagaacatccggctac
ggttcgcaaggttgtgggttcaacccccaaccggatcataccaaagattc
tcaaagtgGTACttaatgcctctctgcttgatgctcagcaatagacgata
tcggatttagataaatgcaatgcattctggtttctagggactctcaaagg
aattataatagatcaattataatagattataattcctttgagagtcccta
gaaaccagaatgcattgcatttatctaaatccaaTATCGTCTATTAAGAG
AAcgatccagggagaaagagtggcaccctcctCTACCTTCAGGGAGTTAG
TTATCGAAATAGGAGCCTTCTGGACGCCTCCGACTGCAGTCGACttactt
acttttttctttctttatatcACAATAGATGATTTACATGCTTCGAAACC
CAAATGATGTTTGCCAATCCCTTCACAGTCACTTCTATACACTCCAAGAT
GGCTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCGATGATGC
AGGATATTATTCTGGTCCATTTTTTAGACATGTTTTGGGATACTGGAAGC
GACGCTCTCATGAAAATATACTCATCATTTTTTAcgaagaaatgaaaaaa
gatttatcagGTCATATCAAGAAGATTGCTAATTTCTTAGACATTGAAAT
TTCAGATGAAGAAGTTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGA
TGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGGTCAGT
GTGAaacgattttttcaaaatctttgctgaagatgagtaaaattatttaa
aaagaagATGCCGTCATAATTAACAAATAACGTcgaaattttttacattg
aattttgagatttagtaaaattaccaaaagtttttgaaaatttaaagtaa
ttGGCTTTATGGATTTCAATGAATTCCACGATTTTGTGATTATTCAGGAt
gttagctggattttatgaccAATGTGTTGCAATAAAATCATAAATGGGTT
TTTTGACTCAAAATTTTGTAGACTTATGcattaaaagattttgttaaagT
CATAAAGGTTTGTTTGCTTTgaaaacagggggggggggtcttgcagttac
tccttgacactatgtggagtaactgcaattttggacattttctNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGATGCCGTCATAATTAACAAATAACGTcgaaattttttacatt
gaattttgagatttagtaaaattaccaaaagtttttgaaaatttaaagta
attGGCTTTATGGATTTCAATGAATTCCACGATTTTGTGATTATTCAGGA
tgttagctggattttatgaccAATGTTGCAATAAAGTCATAAATGGGTTT
TTTGACTCAAAATTTTGTAGACTTATGcattaaaagattttgttaaagtc
agaaagttttgcgtgctttgaaaaatgtaaaagagtGCAGGGATGGTTTA
AATTACATCCTGGTAAAAATAAAGTTTAATCCATAGATTTCTAAAGCCcg
aaagggctagatgtcgcgCTTTGGCTGGAAAGTGTACCGTATCTCGGTAG
AAAATTCTACCTatgtcacgtgacattacaatagaatttcagcccttgac
caatcagaagctttgcggaTTTTTGAGAATAGCAGCTATATTTCTTGCgc
tatttactttttttcgccTGTGattggcttaaagcacgacatctagccct
tcgggctttataaattaTTGGTTTAATCCAGGTGAAGGAGGAGAAATAAC
TCGTATACAAAAAAGAAGGAGACCTCTGTGGTATTGTATCAACCTTTGTC
AGCTTCGTCTGTACTATagcactttgtaataaaaataaacacaTTTTGTT
TTTACAAATTGAATAATTTTCCAGGATGGACATAGTGCAACTGTCGAAGC
AGCTCACAAGGGAAAGACAATGTTTAACAAGGGAAAAGTTGGATCGTGGA
AGGCTCTGTTTACACCAGACATGACAAAACAAATGGAAGAATGGGAATCG
AAATGGTTGAAAGATCATGATCTTAAATTCATTTATGAATAGTATTgtaa
tcccggggggggggtactacccttgtcgaccgacgggggggctccgccga
gg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034746XLOC_034746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055144-exon-scaffold_251-1491911889:261389..261486TCONS_00055144-exon-scaffold_251-1491911889:261389..261486Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1510915933:261389..261486TCONS_00055144-exon-scaffold_251-1510915933:261389..261486Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1575043694:261389..261486TCONS_00055144-exon-scaffold_251-1575043694:261389..261486Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1491911889:261957..262044TCONS_00055144-exon-scaffold_251-1491911889:261957..262044Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1510915933:261957..262044TCONS_00055144-exon-scaffold_251-1510915933:261957..262044Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1575043694:261957..262044TCONS_00055144-exon-scaffold_251-1575043694:261957..262044Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1491911889:262974..263118TCONS_00055144-exon-scaffold_251-1491911889:262974..263118Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1510915933:262974..263118TCONS_00055144-exon-scaffold_251-1510915933:262974..263118Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1575043694:262974..263118TCONS_00055144-exon-scaffold_251-1575043694:262974..263118Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1491911889:263817..264182TCONS_00055144-exon-scaffold_251-1491911889:263817..264182Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1510915933:263817..264182TCONS_00055144-exon-scaffold_251-1510915933:263817..264182Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1575043694:263817..264182TCONS_00055144-exon-scaffold_251-1575043694:263817..264182Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1491911889:266263..266490TCONS_00055144-exon-scaffold_251-1491911889:266263..266490Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1510915933:266263..266490TCONS_00055144-exon-scaffold_251-1510915933:266263..266490Clytia hemisphaericaexon
TCONS_00055144-exon-scaffold_251-1575043694:266263..266490TCONS_00055144-exon-scaffold_251-1575043694:266263..266490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:261389..266490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.853051	0.241442	0.204719	0.0881421	0	0	0	0.365961	1.50402	1.45194	3.20804	1.50547	0	0	0	0	0.393638	0.702682	0.75373	0.820756	4.6251	3.16896	2.3886	8.65644	0.0463136	2.40805	75.9754	105.993	0	0
Blast
[Close]
BLAST of TCONS_00055144 vs. Swiss-Prot (Human)
Match: ST1B1 (Sulfotransferase family cytosolic 1B member 1 OS=Homo sapiens GN=SULT1B1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 8.216e-25
Identity = 82/266 (30.83%), Postives = 125/266 (46.99%), Query Frame = 2 
Query:   17 GYFQNIENIKNFEFFEDDTVICGFLKTGTNWCERIVWALRNDIKLN------IQHAPPVSVFGIVMGIGDFDTDNNKANDKIFSSMKRPRVIKMHLPYELLXXXXXXXXXXMIYMLRNPNDVCQSLHSHFYTLQD--GFSGSLQDVVN-LMTDDAGYYSGPFFRHVLGYWKRRSHENILIIFYEEMKKDLSGHIKKIANFLDIEISDEEVSNLAKHFSFDSMKRKAEQMIPFHAKQDGHSATVEAAHKGKTMFNKGKVGSWKALFT 787
             +  N E I+ F    DD VI  + K+GT W   I+  + ND  +       I    P+    + M +    T   +  +K  S    PR++K HLP +LLPK F +   KMIY+ RN  DV  S + HF  + +   F G+ ++ +   +T    Y  G +F HV  +WK++    IL ++YE+MK++    IKKI  FL+  ++DE +  +  H SF+ MK     ++ +      H  T    H       KG  G WK  FT
Sbjct:   23 AFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEIIDMILNDGDIEKCKRGFITEKVPM----LEMTLPGLRTSGIEQLEKNPS----PRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYY-HFDLMNNLQPFPGTWEEYLEKFLTGKVAY--GSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNP--LVNY-----THLPTTVMDHSKSPFMRKGTAGDWKNYFT 270
The following BLAST results are available for this feature:
BLAST of TCONS_00055144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1B18.216e-2530.83Sulfotransferase family cytosolic 1B member 1 OS=H... [more]
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