TCONS_00055163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055163
Unique NameTCONS_00055163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055163 ID=TCONS_00055163|Name=TCONS_00055163|organism=Clytia hemisphaerica|type=transcript|length=328bp
ATTCTTTCGAGTATACACCGTCTTACTGGATACAAGGTGATAACGATTGT
GACTGTAGCTTGGTAATGAATCGATGCTTGACAGATGAACCCAAAAGCTG
TTTTGGAAAATCAGCCGTTCTTTGTTATAAAACACCTGCCGACCGAAATG
TCACATTTTTTGTGTCTTCTAAAGCCAAGTTGATGTCGAATGACAAAGCA
ACAGATGATTGTAAGATGCGAGGTGGGGGTCTAGCTAGTTTCATCACTTC
AACGGAATGGCAAAATTTTGTTGACAGTGAAGTAAAGATTGAAGCTGGGT
CTGAATATTGGATAGGACTTGAAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00055163-protein

>TCONS_00055163-protein ID=TCONS_00055163-protein|Name=TCONS_00055163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
SFEYTPSYWIQGDNDCDCSLVMNRCLTDEPKSCFGKSAVLCYKTPADRNV
TFFVSSKAKLMSNDKATDDCKMRGGGLASFITSTEWQNFVDSEVKIEAGS
EYWIGLEG
Run BLAST on NCBI

transcript from alignment at scaffold_251:428283..429990+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055163 ID=TCONS_00055163|Name=TCONS_00055163|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at scaffold_251:428283..429990+ (Clytia hemisphaerica)
ATTCTTTCGAGTATACACCGTCTTACTGGATACAAGGTGATAACGATTGT
GACTGTAGCTTGGTAATGAATCGATGCTTGACAGATGAACCCAAAAGCTG
TTTTGGAAAATCAGCCGTTCTTTGTTATAAAACACCTGCCGACCGAAGTA
TGTACTTTGTAAAATTTCACTTGCTTAAccaaaaaaaatgattaaataaa
ttttgcccaaaataaGTAGATATCAAAAAGTGTTGTACATTAAACGAGTG
CAGTGACAAGAAACTCAGACGTAAGTCTGTTCTGGAAAAATTGGAAGTCT
GCACATTTTCATACATTGCTCTTGAATTGACAAGATTATCATAAGTGgac
tattttaaaattttaaattttttccaaaaaggtgaaaatttaaatttaaa
aagttaagatATATTCTACTTGATCgaagattttgaatttaaattttcta
aaacttCGAACTTCGCTGAATTTATATCTTTCCACCATAAGTTACAGCCC
TCAGTGGGTCCATTTTGCCCATTTAAACTTTGAGGGGCCAAAAAAAAGAT
ATAAGAAtctgaaaatatatttgaaatcaaCGTagttcaaaatttaagaa
agatAGAAAAGTGTAATTCAAAATTTCGGTCAGGTAGAAAATAATCATAG
ATAATTGTGATTAATCTTGAATTGATTAAGGTTATTCTAGAAAGACATTT
AATCCTTCAACCTTCCTTcgttttttttcatcttcattttctaaatGTTT
AAAAGATTGTCCATGCTTACTATTCTTTTCAGCGAGGTATCGCTTCTCTC
TTTCAAGAGGAATTTACCGAGTATAAATcttatcaaaaaaagtttagGTA
TAAGTATTCTCTCTGAAGCAGTATAGTATATTCTGTTCTGGTATCATTGA
AAAACATGCTCcaattttctttgactttttttatagATGTCACATTTTTT
GTGTCTTCTAAAGCCAAGTTGATGTCGAATGACAAAGCAACAGATGATTG
TAAGATGCGAGGTGGGGGTCTAGCTAGTTTCATCACTTCAACGGAATGGC
AAAATTTTGTTGACAGGTATTTTATTTCGTTTCTGTTTTGCTTTTCATgc
tctttgaaattttttttcgaaagttttccacccaggacatgtTATTCTCA
GCCCCTTCTTATTGATGTATGATTTTATTGATTCAAATGCCCCTTATTTT
TTTTCGCCTCCTTTGTCAAACCTTTCCATCCAGAATATTCTCATCCCAAC
CCCTTGTTCCAATCCTCCGTTCATTAGGTAATAGTGTAGGGTGAACTTGC
TAGTTTATAGAAAGCCTCGTCAAATATCCGTTCTCGCACGTCCAATATTT
TTGTATATTGGATTCGACTgtgtccaataactgcttaatgTTTTCCGGGA
CTATACTCTATCATCGCGAAAGAATTTCATTACCAATCACCCATTCAACG
CACACCACATTCTGCACTATAGGGATGTGGCAAATGTGATGATCTGATTA
ACTTCTTCAATGAAAGCTACTGAGTTTTATGATCCGAGTTTCTTTTTGGT
GAGATTGATTTGGTTTAGCGTTGATATTCATCCAAAATCTGAATTAACGC
TGATATTTCGactttttttcattaattttaactattaatttcattttcct
GTTTCAGTGAAGTAAAGATTGAAGCTGGGTCTGAATATTGGATAGGACTT
GAAGGTAA

Coding sequence (CDS) from alignment at scaffold_251:428283..429990+

>TCONS_00055163 ID=TCONS_00055163|Name=TCONS_00055163|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_251:428283..429990+ (Clytia hemisphaerica)
TCTTTCGAGTATACACCGTCTTACTGGATACAAGGTGATAACGATTGTGA
CTGTAGCTTGGTAATGAATCGATGCTTGACAGATGAACCCAAAAGCTGTT
TTGGAAAATCAGCCGTTCTTTGTTATAAAACACCTGCCGACCGAAATGTC
ACATTTTTTGTGTCTTCTAAAGCCAAGTTGATGTCGAATGACAAAGCAAC
AGATGATTGTAAGATGCGAGGTGGGGGTCTAGCTAGTTTCATCACTTCAA
CGGAATGGCAAAATTTTGTTGACAGTGAAGTAAAGATTGAAGCTGGGTCT
GAATATTGGATAGGACTTGAAGGTTCTTTCGAGTATACACCGTCTTACTG
GATACAAGGTGATAACGATTGTGACTGTAGCTTGGTAATGAATCGATGCT
TGACAGATGAACCCAAAAGCTGTTTTGGAAAATCAGCCGTTCTTTGTTAT
AAAACACCTGCCGACCGAAATGTCACATTTTTTGTGTCTTCTAAAGCCAA
GTTGATGTCGAATGACAAAGCAACAGATGATTGTAAGATGCGAGGTGGGG
GTCTAGCTAGTTTCATCACTTCAACGGAATGGCAAAATTTTGTTGACAGT
GAAGTAAAGATTGAAGCTGGGTCTGAATATTGGATAGGACTTGAAGGTTC
TTTCGAGTATACACCGTCTTACTGGATACAAGGTGATAACGATTGTGACT
GTAGCTTGGTAATGAATCGATGCTTGACAGATGAACCCAAAAGCTGTTTT
GGAAAATCAGCCGTTCTTTGTTATAAAACACCTGCCGACCGAAATGTCAC
ATTTTTTGTGTCTTCTAAAGCCAAGTTGATGTCGAATGACAAAGCAACAG
ATGATTGTAAGATGCGAGGTGGGGGTCTAGCTAGTTTCATCACTTCAACG
GAATGGCAAAATTTTGTTGACAGTGAAGTAAAGATTGAAGCTGGGTCTGA
ATATTGGATAGGACTTGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034749XLOC_034749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055163-proteinTCONS_00055163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055163-exon-scaffold_251-1491911889:428283..428429TCONS_00055163-exon-scaffold_251-1491911889:428283..428429Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1510915933:428283..428429TCONS_00055163-exon-scaffold_251-1510915933:428283..428429Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1575043694:428283..428429TCONS_00055163-exon-scaffold_251-1575043694:428283..428429Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1491911889:429219..429348TCONS_00055163-exon-scaffold_251-1491911889:429219..429348Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1510915933:429219..429348TCONS_00055163-exon-scaffold_251-1510915933:429219..429348Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1575043694:429219..429348TCONS_00055163-exon-scaffold_251-1575043694:429219..429348Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1491911889:429940..429990TCONS_00055163-exon-scaffold_251-1491911889:429940..429990Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1510915933:429940..429990TCONS_00055163-exon-scaffold_251-1510915933:429940..429990Clytia hemisphaericaexon
TCONS_00055163-exon-scaffold_251-1575043694:429940..429990TCONS_00055163-exon-scaffold_251-1575043694:429940..429990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:428283..429990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.581428	0.337547	0	1.60813	1.58845	1.14984	1.43529	0.75366	0.311177	2.11425	0	7.53427	7.2067	4.57062	3.99665	0	0.688156	5.07053	7.29568	0.864718	0.421779	0	0.621525	3.84094	4.28493	1.63513	0	0.99267	0.337125
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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