TCONS_00055164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055164
Unique NameTCONS_00055164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055164 ID=TCONS_00055164|Name=TCONS_00055164|organism=Clytia hemisphaerica|type=transcript|length=350bp
GGAAAGCTGAAGATAGTAATCCAAAGAGGCGCTACATATGTGAAATATAT
GTGGAAAAGATCCCTCGCCCTGATGGAGAAGTAACCTACTTGATGATCCA
CAATCCAGCCAGAAATTTCATAGAAGCACAAAACGACTGTAAAAACAGAG
GAGGAGATCTTGCATCATTCTCAAATGAGTCGGATTGGACAACATTCTCT
GAGCTTGTACAACAAAGGTATAATGAGATTCAATTTTGGATGAGACTCAC
GACAGCtgatttacaaggtatgaactACCACATTTTTATTAGTGTGAGTC
ATAATACCTCTTTAAAACCACAGGCAAAGGTTAAAGGATGTCAGCAGCCT
Run BLAST on NCBI

transcript from alignment at scaffold_251:431083..432405+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055164 ID=TCONS_00055164|Name=TCONS_00055164|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_251:431083..432405+ (Clytia hemisphaerica)
GGAAAGCTGAAGATAGTAATCCAAAGAGGCGCTACATATGTGAAATATAT
GGTAATGATGTTTGATGATAATTACTCTTGAACAGACTACAAGTTTTTCG
CCTACGAAAATAAACCCAAGTCGTacccgcacggggaacacaaatttatt
CAAGCTAAGGAATTTCGAGTTGAagagtaaagtttataaggcattgttaa
ctggcAAGAAAACCGAAAACATGTTCGAGTTtacagaggttcgaattaaa
gagactctactgtgtTTTTAGCAGAATTGATAACTTGACTTTGAAGGCCG
TCTTGAACCTGACGAATCTGTATAATTTGATGTTTATTTTATATCCTTTT
AAGTGGAAAAGATCCCTCGCCCTGATGGAGAAGTAACCTACTTGATGATC
CACAATCCAGCCAGAAATTTCATAGAAGCACAAAACGACTGTAAAAACAG
AGGAGGAGATCTTGCATCATTCTCAAATGAGTCGGATTGGACAACATTCT
CTGAGCTTGTACAACAAAGGTATCATCCTTTTTTAATGAGGCTGTAATGT
GTGGTGGCTTATTCTTTAGTCTATAGAATTCGGGCATTCGGTTGCGTAAG
CTTGGATCCTACTTATCGTTAAAATTACATCTATATAACGCTCATAAACG
TTTTATACACCCTGTCTCATAGTGACCCAGTAGAATCCTTTagctaccca
gctggcacacaacgttgtttcaacgtttatctaacgttaacaacgtccat
ataacgttagatgaacgttgaaacagcgttgtgtgtcagctgggtagtAA
TTAGGGTAGAATGAAAAGAActtagaaatagaaaatttacaataaatggg
tttttaaattcttctgtggtgattcttaaaactttgttttgtcCTTTGAG
AATGTGACTTAAGTGTTCTTCAACTGGagcaagctggagtttttacaagc
tcttatttgatttggttggtcttTAACATGTAGTAAAaacttttgttact
ttttttaaagaacgcgtcatctctattacttcaaacgTCCAATTAGTGag
gtatcttataaaaactccagctcatccccttCAACTGGGACAACTATTTG
CTAAGTTTCCATCGGGCCTCTGGTCCAGGTTGTTTAATGTGAATGCTGAG
ATGTTGAAGCAACAGCGACTTTTTTCGCTTCGTTTTGCAGGTATAATGAG
ATTCAATTTTGGATGAGACTCACGACAGCtgatttacaaggtatgaactA
CCACATTTTTATTAGTGTGAGTCATAATACCTCTTTAAAACCACAGGCAA
AGGTTAAAGGATGTCAGCAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034748XLOC_034748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055164-exon-scaffold_251-1491911889:431083..431133TCONS_00055164-exon-scaffold_251-1491911889:431083..431133Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1510915933:431083..431133TCONS_00055164-exon-scaffold_251-1510915933:431083..431133Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1575043694:431083..431133TCONS_00055164-exon-scaffold_251-1575043694:431083..431133Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1491911889:431436..431601TCONS_00055164-exon-scaffold_251-1491911889:431436..431601Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1510915933:431436..431601TCONS_00055164-exon-scaffold_251-1510915933:431436..431601Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1575043694:431436..431601TCONS_00055164-exon-scaffold_251-1575043694:431436..431601Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1491911889:432273..432405TCONS_00055164-exon-scaffold_251-1491911889:432273..432405Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1510915933:432273..432405TCONS_00055164-exon-scaffold_251-1510915933:432273..432405Clytia hemisphaericaexon
TCONS_00055164-exon-scaffold_251-1575043694:432273..432405TCONS_00055164-exon-scaffold_251-1575043694:432273..432405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:431083..432405 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.284891	0.278722	1.35727	0.536265	1.94094	1.51424	0	0	1.2746	0	0.000116516	6.5917	1.21954	1.72221	0.377773	0.387205	0	3.70119	0.973102	0	1.15399	1.04914	1.62089	1.4466	0	0.368208	1.11709	0.56907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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