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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055166 ID=TCONS_00055166|Name=TCONS_00055166|organism=Clytia hemisphaerica|type=transcript|length=593bp
atacgtcacttaaacaatagaaaaagtgacgtattgggtggagcaaaaac
agaaaagttgcataatttcgtgaagtcattgcagtggtgcatatcatgaa
tacaaacctttttaaatattcttttaaagtTTCATCCACCACTACGACAA
CGACAATAATAACTACAACAACCACAGCTGTTGTCCCTACAACTACAACC
ACAGCTGTTGTCCCTACAACTACAACCACAGCTGTTGTCCCTATAACTAC
AAGCGCTTCCTCGACGAGTCGTCCAACCATCACCACGACCACAGAGAGCA
CTTTAACTACAACCACAACATCCGATCAAACTGCTACTACAACATCCGAT
CAAATCACCACAATATCACCATCAACTACCGTAGCATTTCAAGAAACATC
CACAGAATTGACAACCACAGAGCAAGCACCAATCAATGGTGGATGGAGTG
ATTGGGGAAATTGGAGTGGATGCACGCCAACGTGCGGAAAGCAAaggatg
aaaacaaaagaaagaaaatgcgATCAGCCCTTTCCACAAAATGGCGGACT
CCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAAC Run BLAST on NCBI protein sequence of TCONS_00055166-protein >TCONS_00055166-protein ID=TCONS_00055166-protein|Name=TCONS_00055166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MNTNLFKYSFKVSSTTTTTTIITTTTTAVVPTTTTTAVVPTTTTTAVVPI
TTSASSTSRPTITTTTESTLTTTTTSDQTATTTSDQITTISPSTTVAFQE
TSTELTTTEQAPINGGWSDWGNWSGCTPTCGKQRMKTKERKCDQPFPQNG
GLLCAGISIEHTQCEN Run BLAST on NCBI transcript from alignment at scaffold_251:441773..442975+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055166 ID=TCONS_00055166|Name=TCONS_00055166|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_251:441773..442975+ (Clytia hemisphaerica)
atacgtcacttaaacaatagaaaaagtgacgtattgggtggagcaaaaac
agaaaagttgcataatttcgtgaagtcattgcagtggtgcatatcatgaa
tacaaacctttttaaatattcttttaaagtTTCATCCACCACTACGACAA
CGACAATAATAACTACAACAACCACAGCTGTTGTCCCTACAACTACAACC
ACAGCTGTTGTCCCTACAACTACAACCACAGCTGTTGTCCCTATAACTAC
AAGCGCTTCCTCGACGAGTCGTCCAACCATCACCACGACCACAGAGAGCA
CTTTAACTACAACCACAACATCCGATCAAACTGCTACTACAACATCCGAT
CAAATCACCACAATATCACCATCAACTACCGTAGCATTTCAAGAAACATC
CACAGAATTGACAACCACAGAGCAAGGTGAGAAAGTTCTTTGATGTCCCA
GTGTCTTAAATGTGTGGGTGTAATTTTGAAAGTCTATTTTCACTTTAATA
AACtctttcataaattacgtctcGAGCAACGCTTgtctcgttttcaaaat
attgctatggtaattgacTCCCAGATGAGTTCAAAATTAGTTTGCTCTAT
TCAACAAGCAACACTTGTAAAGACTCAAAAGACTTGATCACCTTAATAac
ggtttcaaaacgaggcagtcgttaaactcaaaataatttatgaaaaggcc
tattcaTGACATGcccaccactgcaatgacttcacgaaattatgcaactt
ttctgtttttgttccacccaatacgtcactttttctattgttagAGTGAC
TCTCCAGCATGGTGCATATCAAGAATTTGAAAAACGTTTTGCAAAGAAAG
AGCTTAGCCTTGATACGATCATTAAGTTTATTTCCTTAAAACATCACTTG
TAACAAAACTATGATTCTATCGGCCAGGAACGACGATGGAATGTTAAGGG
GATGGGATGAAtgctttttctgaaaaaaaactgttttcttGGGTACCCTA
TGACCATTAACTTAACCAATAAGTTTATCCATTTAGCACCAATCAATGGT
GGATGGAGTGATTGGGGAAATTGGAGTGGATGCACGCCAACGTGCGGAAA
GCAAaggatgaaaacaaaagaaagaaaatgcgATCAGCCCTTTCCACAAA
ATGGCGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAA
AAC Coding sequence (CDS) from alignment at scaffold_251:441773..442975+ >TCONS_00055166 ID=TCONS_00055166|Name=TCONS_00055166|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_251:441773..442975+ (Clytia hemisphaerica)
atgaatacaaacctttttaaatattcttttaaagtTTCATCCACCACTAC
GACAACGACAATAATAACTACAACAACCACAGCTGTTGTCCCTACAACTA
CAACCACAGCTGTTGTCCCTACAACTACAACCACAGCTGTTGTCCCTATA
ACTACAAGCGCTTCCTCGACGAGTCGTCCAACCATCACCACGACCACAGA
GAGCACTTTAACTACAACCACAACATCCGATCAAACTGCTACTACAACAT
CCGATCAAATCACCACAATATCACCATCAACTACCGTAGCATTTCAAGAA
ACATCCACAGAATTGACAACCACAGAGCAAGCACCAATCAATGGTGGATG
GAGTGATTGGGGAAATTGGAGTGGATGCACGCCAACGTGCGGAAAGCAAa
ggatgaaaacaaaagaaagaaaatgcgATCAGCCCTTTCCACAAAATGGC
GGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAACat
gaatacaaacctttttaaatattcttttaaagtTTCATCCACCACTACGA
CAACGACAATAATAACTACAACAACCACAGCTGTTGTCCCTACAACTACA
ACCACAGCTGTTGTCCCTACAACTACAACCACAGCTGTTGTCCCTATAAC
TACAAGCGCTTCCTCGACGAGTCGTCCAACCATCACCACGACCACAGAGA
GCACTTTAACTACAACCACAACATCCGATCAAACTGCTACTACAACATCC
GATCAAATCACCACAATATCACCATCAACTACCGTAGCATTTCAAGAAAC
ATCCACAGAATTGACAACCACAGAGCAAGCACCAATCAATGGTGGATGGA
GTGATTGGGGAAATTGGAGTGGATGCACGCCAACGTGCGGAAAGCAAagg
atgaaaacaaaagaaagaaaatgcgATCAGCCCTTTCCACAAAATGGCGG
ACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055166-exon-scaffold_251-1491911889:441773..442198 | TCONS_00055166-exon-scaffold_251-1491911889:441773..442198 | Clytia hemisphaerica | exon |
| TCONS_00055166-exon-scaffold_251-1510915933:441773..442198 | TCONS_00055166-exon-scaffold_251-1510915933:441773..442198 | Clytia hemisphaerica | exon |
| TCONS_00055166-exon-scaffold_251-1575043694:441773..442198 | TCONS_00055166-exon-scaffold_251-1575043694:441773..442198 | Clytia hemisphaerica | exon |
| TCONS_00055166-exon-scaffold_251-1491911889:442809..442975 | TCONS_00055166-exon-scaffold_251-1491911889:442809..442975 | Clytia hemisphaerica | exon |
| TCONS_00055166-exon-scaffold_251-1510915933:442809..442975 | TCONS_00055166-exon-scaffold_251-1510915933:442809..442975 | Clytia hemisphaerica | exon |
| TCONS_00055166-exon-scaffold_251-1575043694:442809..442975 | TCONS_00055166-exon-scaffold_251-1575043694:442809..442975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:441773..442975 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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