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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055167 ID=TCONS_00055167|Name=TCONS_00055167|organism=Clytia hemisphaerica|type=transcript|length=4269bpRun BLAST on NCBI protein sequence of TCONS_00055167-protein >TCONS_00055167-protein ID=TCONS_00055167-protein|Name=TCONS_00055167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp MNCSNYCHLEGKACDKEGFIAPLDIFKSLDTNCFDWSIGQSSITPYFDNSRun BLAST on NCBI transcript from alignment at scaffold_251:443393..459248+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055167 ID=TCONS_00055167|Name=TCONS_00055167|organism=Clytia hemisphaerica|type=transcript|length=15856bp|location=Sequence derived from alignment at scaffold_251:443393..459248+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:443393..459248+ >TCONS_00055167 ID=TCONS_00055167|Name=TCONS_00055167|organism=Clytia hemisphaerica|type=CDS|length=39663bp|location=Sequence derived from alignment at scaffold_251:443393..459248+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055167 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.079e-32 Identity = 71/164 (43.29%), Postives = 93/164 (56.71%), Query Frame = 1
Query: 493 WSSWSECSASCNG-QKTRHRICDFDDPDF---QCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 966
W+SWS CS SC G + R R C P + +C S Q++ C S PCP +G S WS W C++TC GG+ RYR C NP PSNGG C G +Q + C CPV+G W +W WS CS C G TR+R C +P P+ GG+ C G++T+ C+ C
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQ-CSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 133.265 bits (334), Expect = 7.022e-31 Identity = 68/165 (41.21%), Postives = 92/165 (55.76%), Query Frame = 1
Query: 490 KWSSWSECSASC-NGQKTRHRICDFDDPD---FQCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 966
+WS+W CS +C G + R R+C+ P C S + NC + PCPV+G S WS WEECT++CG G Q R R C NPS +GG C G + +C + CPV+G W+ W W + CS+ C G TR R C NP P +GG +C G T+ + C+ C
Sbjct: 4534 QWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGT-CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 3 Score: 129.028 bits (323), Expect = 1.286e-29 Identity = 65/167 (38.92%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 490 KWSSWSECSASC-NGQKTRHRICDFDDPDFQCTSQTQTENCSA-------PCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 966
+WS W EC+ SC G +TR R C+ +P Q + N PCPV+G S+W W C+++CG G Q R R C NP P+ GG++C G Q ++C CP++G W W W SACS C G R R C++P P YGG+ C+G+ + C+ PC
Sbjct: 4591 EWSLWEECTRSCGRGNQTRTRTCN--NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASW-SACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 110.538 bits (275), Expect = 5.615e-24 Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 562 DDPDFQCTSQTQTENCSAPCPV----NGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 966
D +F+C ++ + PV +GG S WS+W C+ TCG G Q R R C P P+NGG C G + + C CPV+G W+ W+ W C++ C G+ TR R C NP +GG+ C+GN+ E C+ PC
Sbjct: 4503 DTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEE-CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00055167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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