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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055168 ID=TCONS_00055168|Name=TCONS_00055168|organism=Clytia hemisphaerica|type=transcript|length=818bpRun BLAST on NCBI transcript from alignment at scaffold_251:444116..447974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055168 ID=TCONS_00055168|Name=TCONS_00055168|organism=Clytia hemisphaerica|type=transcript|length=3859bp|location=Sequence derived from alignment at scaffold_251:444116..447974+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055168 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 2.393e-34 Identity = 71/164 (43.29%), Postives = 93/164 (56.71%), Query Frame = 3
Query: 21 WSSWSECSASCNG-QKTRHRICDFDDPDF---QCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 494
W+SWS CS SC G + R R C P + +C S Q++ C S PCP +G S WS W C++TC GG+ RYR C NP PSNGG C G +Q + C CPV+G W +W WS CS C G TR+R C +P P+ GG+ C G++T+ C+ C
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQ-CSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 131.339 bits (329), Expect = 2.488e-33 Identity = 68/165 (41.21%), Postives = 92/165 (55.76%), Query Frame = 3
Query: 18 KWSSWSECSASC-NGQKTRHRICDFDDPD---FQCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 494
+WS+W CS +C G + R R+C+ P C S + NC + PCPV+G S WS WEECT++CG G Q R R C NPS +GG C G + +C + CPV+G W+ W W + CS+ C G TR R C NP P +GG +C G T+ + C+ C
Sbjct: 4534 QWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGT-CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 3 Score: 126.331 bits (316), Expect = 1.369e-31 Identity = 65/167 (38.92%), Postives = 90/167 (53.89%), Query Frame = 3
Query: 18 KWSSWSECSASC-NGQKTRHRICDFDDPDFQCTSQTQTENCSA-------PCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 494
+WS W EC+ SC G +TR R C+ +P Q + N PCPV+G S+W W C+++CG G Q R R C NP P+ GG++C G Q ++C CP++G W W W SACS C G R R C++P P YGG+ C+G+ + C+ PC
Sbjct: 4591 EWSLWEECTRSCGRGNQTRTRTCN--NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASW-SACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 119.398 bits (298), Expect = 2.902e-29 Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 3
Query: 21 WSSWSECSASC-NGQKTRHRICDFDDPDFQCT----SQTQTENCSAP-CPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 494
W W CS SC G +TR R+C+ P F + ++TQ + C+ CP++G ++W+SW C+ +CGGG + R R C++P P GG C G QS C CP +G W+ W+ W + CS+ CN G + R R C NP P GG+ C G ++ + C+ C
Sbjct: 4649 WQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGT-CSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 5 Score: 110.538 bits (275), Expect = 2.108e-26 Identity = 54/139 (38.85%), Postives = 75/139 (53.96%), Query Frame = 3
Query: 90 DDPDFQCTSQTQTENCSAPCPV----NGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 494
D +F+C ++ + PV +GG S WS+W C+ TCG G Q R R C P P+NGG C G + R C CPV+G W+ W+ W C++ C G+ TR R C NP +GG+ C+GN+ E C+ PC
Sbjct: 4503 DTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEE-CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 6 Score: 78.9518 bits (193), Expect = 3.248e-16 Identity = 46/114 (40.35%), Postives = 58/114 (50.88%), Query Frame = 3
Query: 9 TEGKWSSWS---ECSASCNG-QKTRHRICDFDDPDFQCTS----QTQTENCSAP-CPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSRICGVGKCP 323
T G WS WS CS +CNG Q R+R CD P + +Q + C+ CPV+G SW SW +C+ +CGGG + R R C +P P GG C G Q C V CP
Sbjct: 4756 THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00055168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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