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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055170 ID=TCONS_00055170|Name=TCONS_00055170|organism=Clytia hemisphaerica|type=transcript|length=1106bp
ATCCAGTTAAATTAGTTGAATATCCACGTTACTATGGAGTTGTTTTGTCA
GGTCATTTGAAATATATTGCACACTCTATGGAAGCAAGTATTCATTTCCA
TGAAAAGGACATTGTTGAAATGATTGCTGGACAGACTGACAAAATGAAGC
CACCGAACAAGTTTGAAACATACACATTATTCGATACGAATTCACCGACA
TTGATGGACGCCATCAAAACTTTATTATGGATGCTGTTTACCGCTGTCGT
TCTTGGTTTCATTTTTTCCGCGTAtcgatttcataaaaaacgaacCCAGA
TTATTGACATCGATAATACTGTTGACACTTctCTATCTATTCGTCCCATA
TGGAGAGAAGTCATCAAATTGCATTATCTGTTTTGTCATCGAGTgtataa
tttacagaccagaatggaTCAAGAAAGAATCAAATTATATCGAGACAAAG
GAGCAAGTTCTTTGAGAAACAATAACCGATTTCATTTATATTCTCGGCAG
AAATATTCTACAGTTGGCAATGAGGGCTCAGATACAAAAATTGCTCAAGC
TTTTCGAAAACTATCTCGACTTTCAATCACAAGCAACTCATCTACGAAAA
GCTATAATCGACACTACGATGATTTGGAACGAGGAGAGTGTTCCCATAGT
AACAACAATAATGACGTGTCGGAAAAAACTTTTCGTAAGATTTCGATCTC
CAAAAGAAAGAGACGTGGTAAAGAGAGCATTGCTGGATTTTCAAGACTTC
ATGATTTAGAAGAAGAACAAGAGAGAACACAAAGTGATTTTTCAATGCGT
TCTCCCAGCCTCGCTTCCATGCGGAGCTACAATGAACGTATCAAAGATCT
TGATTCCGATTTGGATTTGTATAATCAGGGATACGACGAATCCGATATTG
AAAGTGacttatcgggaaatcgggattCGAGTGATGAGGGTGAGAACAGA
GAAACCGATTCGGATTCCTCTGACAGTAATTGAAATATTGATCATTCACA
TGAGGCTGGGAAGCTCAATACTTTAATGGTATAACATTTCGCTGATATTG
AATTTCACagaagtcccaatggaaatttggaaatgCCTTATTCGCAGAAT
ATTTCC Run BLAST on NCBI transcript from alignment at scaffold_251:456302..459248+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055170 ID=TCONS_00055170|Name=TCONS_00055170|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at scaffold_251:456302..459248+ (Clytia hemisphaerica)
ATCCAGTTAAATTAGTTGAATATCCACGTTACTATGGAGTTGTTTTGTCA
GGTCATTTGAAATATATTGCACACTCTATGGAAGCAAGTATTCATTTCCA
TGAAAAGGACATTGTTGAAATGATTGCTGGACAGACTGACAAAATGAAGG
TTAGTGATTTTTTCTCTTAATNGGAAATGATTGCTGGGCAGACTGACAAA
ATGAAGGTTAGTGACTTTCTCCCTTAACCCTTTGTGCGCGctgctttttt
gaaaaagaaatttttctaaattatttttttgaaactcaaaactttaaagt
acCATAAAAGATTGTACCTTGATGATGATTTTGGTACCATTAGAAAGTTA
attttatactctttctaaaaacattaggtttatgcccctttaaatcaagt
ggtcaggggCTATAGCCTCAAGTCTGAGACTcagtattttggcttgtttt
ggacgCATATACGCGTCCGAGGGATAAGGGTTAATAGCCCTGTCGTAAGA
CATAATTGacattgtcaaaaaaaaataaagaattcccTTTCATTCACCGT
ATACCTCTTGTAGCATTTGCGATCCCTGAAAATgcatataaaatattttt
gttttagtcTTCTTATTAATAtttgctttttgaaaattttagcttcaaat
TGCAAAAGTCCGAGATCTaggtttcattttcaataatcgACTGTGGCGAC
AAACTAAAGCGTCGTAGGTAAACCAGTAAATGGTTGCTGACATTCTAATA
AAACCATATTGCAATATTTTCAGCCACCGAACAAGTTTGAAACATACACA
TTATTCGATACGAATTCACCGACATTGATGGACGCCATCAAAACTTTATT
ATGGATGCTGTTTACCGCTGTCGTTCTTGGTTTCATTTTTTCCGCGTAtc
gatttcataaaaaacgaacCCAGATTATTGACATCGATAATACTGTTGAC
ACTTGTAAGTTTTCCCCAGTTTGGGAACGGCTTTTGTTGTTCGCtcattt
cgtttttttctcaacgttcgttcgttcgttcactCTTTCTGCTTGTTCTT
aacatagtcattataaaaaaccccgttctggcaatgtattgttttagctt
tttgttcaattttcttttgttacaaacaaaagacaagttgcgatttgcat
acttttttatcacgttaccaaaatctcctcttgggattggtctagtTTCT
AATCACATATGATCAagaagtttgcaaaataaatggattttggtacgtaa
gctccatcttttaacaataaaaagagataaaagccttccagaccagtgat
tttataatgactatgttCTTAGTTCGTTCTTCCTTGCTTCGCTTCCTTAA
CTTTTTcattcgtttgttcgttcgctCGTTCCTCCTCCATTTCTTCCCTG
ATCCTTTCATCTCTTCTTCCTTTCCTCGCCCCTTTCACTTATCCCTTCCT
TCGACTATTCCTTTATCTCCTTgttcgtttgtttgtttgtttttttgttt
gtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgt
ttgttctttCTAACATCCATTGTTTTTCGTTCCTCTTTTTACTTTAAtgc
cgggggggggtacttaggttAAATGGGTGCTGGATATGTGCAAGCCacaa
gggtccctttttcacacccttgaaagtctctcaaagaggtacaaaaacca
ttaaaaaggaAATTGAGTCTATGTAAGTgtccaaaaatcacgaaattcaa
aatttccaaaataatcgataaaaatgttgagaaagtctctctaagggtcc
caaaaacgctaatttttcatctttctaagtgtcgattttcgattttttgc
tcGGACGTatccgtcacctcgcaaacctagtacccccgggcttTAATGTG
TTCCTTGCTTTAATTGTCAGCCAGTGTAGTTGCCTTTAGATTTTATTAGG
ATATTCGTAGATTGTGATATTTCAATTCACGATTAAACTtatcgtttgtt
cactgttttTTCTTCGTTCggttgtttgtttatttttcgtttCGGTGAAA
AGAGTTTTGGAAGACGTAAATCAAGCTTAAGAAATTGTATTTACGTATGT
AGGATCAATATAGAGTGTTCATGTATCCGTCTCATAAGCAAATGACTTCc
gaacaaaattttaaatttcagctCTATCTATTCGTCCCATATGGAGAGAA
GTCATCAAATTGCATTATCTGTTTTGTCATCGAGTgtataatttacagac
cagaatggaTCAAGAAAGAATCAAATTATATCGAGACAAAGGAGCAAGTT
CTTTGAGAAACAATAACCGATTTCATTTATATTCTCGGCAGAAATATTCT
ACAGTTGGCAATGAGGGCTCAGATACAAAAATTGCTCAAGCTTTTCGAAA
ACTATCTCGACTTTCAATCACAAGCAACTCATCTACGAAAAGCTATAATC
GACACTACGATGATTTGGAACGAGGAGAGTGTTCCCATAGTAACAACAAT
AATGACGTGTCGGAAAAAACTTTTCGTAAGATTTCGATCTCCAAAAGAAA
GAGACGTGGTAAAGAGAGCATTGCTGGATTTTCAAGACTTCATGATTTAG
AAGAAGAACAAGAGAGAACACAAAGTGATTTTTCAATGCGTTCTCCCAGC
CTCGCTTCCATGCGGAGCTACAATGAACGTATCAAAGATCTTGATTCCGA
TTTGGATTTGTATAATCAGGGATACGACGAATCCGATATTGAAAGTGact
tatcgggaaatcgggattCGAGTGATGAGGGTGAGAACAGAGAAACCGAT
TCGGATTCCTCTGACAGTAATTGAAATATTGATCATTCACATGAGGCTGG
GAAGCTCAATACTTTAATGGTATAACATTTCGCTGATATTGAATTTCACa
gaagtcccaatggaaatttggaaatgCCTTATTCGCAGAATATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055170-exon-scaffold_251-1491911889:456302..456450 | TCONS_00055170-exon-scaffold_251-1491911889:456302..456450 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1510915933:456302..456450 | TCONS_00055170-exon-scaffold_251-1510915933:456302..456450 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1575043694:456302..456450 | TCONS_00055170-exon-scaffold_251-1575043694:456302..456450 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1491911889:457075..457255 | TCONS_00055170-exon-scaffold_251-1491911889:457075..457255 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1510915933:457075..457255 | TCONS_00055170-exon-scaffold_251-1510915933:457075..457255 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1575043694:457075..457255 | TCONS_00055170-exon-scaffold_251-1575043694:457075..457255 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1491911889:458473..459248 | TCONS_00055170-exon-scaffold_251-1491911889:458473..459248 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1510915933:458473..459248 | TCONS_00055170-exon-scaffold_251-1510915933:458473..459248 | Clytia hemisphaerica | exon |
| TCONS_00055170-exon-scaffold_251-1575043694:458473..459248 | TCONS_00055170-exon-scaffold_251-1575043694:458473..459248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:456302..459248 + |
Blast
The following BLAST results are available for this feature:
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