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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055171 ID=TCONS_00055171|Name=TCONS_00055171|organism=Clytia hemisphaerica|type=transcript|length=1886bpRun BLAST on NCBI protein sequence of TCONS_00055171-protein >TCONS_00055171-protein ID=TCONS_00055171-protein|Name=TCONS_00055171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp GVTCSFSSAVFFLLLLNCILFVSTNVDEVIDDGDENDRALGPSGYMKREYRun BLAST on NCBI transcript from alignment at scaffold_251:478146..496769+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055171 ID=TCONS_00055171|Name=TCONS_00055171|organism=Clytia hemisphaerica|type=transcript|length=18624bp|location=Sequence derived from alignment at scaffold_251:478146..496769+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:478146..496769+ >TCONS_00055171 ID=TCONS_00055171|Name=TCONS_00055171|organism=Clytia hemisphaerica|type=CDS|length=9288bp|location=Sequence derived from alignment at scaffold_251:478146..496769+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055171 vs. Swiss-Prot (Human)
Match: LMAN2 (Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 9.427e-79 Identity = 128/263 (48.67%), Postives = 174/263 (66.16%), Query Frame = 3
Query: 123 GPSGYMKREYSAIKPF--VGGTSMQFWEMKGDSLLTDDYIRLTPDQQSKSGAVWNTLPVMVRDWEVHVHFKVQGQNTR-FFGDGFAFWYTKDRSELGPVFGAKDYHDGLSIFFDTYANQNGEHSHEHPYISAQINNGTTHYDHDKDGTHSALAGCTAHFRGVDAETHVAIRYLGSRKRLTVQHDMDDENKWAECFDRYGVELPTGYFLGFSSQTGDLSDNHDLISVKFYELASNDAEDDPA-QYLNIQPKADGAEPERDHSED 899
G S ++KRE+S IKP+ VG +SM W+ +G ++LT Y+RLTPD++SK G++WN P ++DWE+HVHFKV G + GDG A WYT+DR GPVFG+KD GL+IF DTY N PYIS +NNG+ YDH KDG + LAGCTA FR D +T +A+RY SR RLTV D++D+N+W C D GV LPTGY+ G S+ TGDLSDNHD+IS+K ++L D+ + + I+P + + +D+ +D
Sbjct: 49 GNSEHLKREHSLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTE-RVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRY--SRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVEHTPDEESIDWTKIEPSVNFLKSPKDNVDD 308 The following BLAST results are available for this feature:
BLAST of TCONS_00055171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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