TCONS_00055174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055174
Unique NameTCONS_00055174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055174 ID=TCONS_00055174|Name=TCONS_00055174|organism=Clytia hemisphaerica|type=transcript|length=1655bp
gattttttatttcgatacTTCAGTGGTTGATACCATTTTATCAATAAATG
GTATGAGTTACAAGGGGGCAAAAgCACATTTTGTAGTATAGCATGGAAAC
ACCAGTTAGCAATGGACAAACCACTAACCCTGCTGTTGCCAACCTcccaa
acaaaagaatttctgatAACGTCATTCAAAAATACCTTTACGGCTACAAA
GAAATGAGGCTTGTTTCGTCGGAAGAAGTTTTATCCACTCTATTGAAAGG
TCAAATACGAAAGTGCACCAGCCTACCGGAAACACCACCTCTATCACCAC
GTAAAATCAGAACACCTGATGAAATATCATTATGTTCGTCAAGTCTACCC
GGATCGAAATTTGGAGCATGCGCAATAAAGAGGATTCAACAAGGCACTTG
GTTTGGTCCTTTCGAAGGGAAGTTAGTGAGGACGACCGAGATTTCATCCA
GTATGAACACAGACCACATGTGGGAGATCTTTCACGACGGAGAAGTCAGT
CATTTCCTTGACGGTTTTAACGAAAATAACTGGATGGCTTTCGTCCGCTG
CGCTCGCCATAAGAAAGAACAAAATCTGGTCGTTTTTCAATATCACGGTT
GTATTTATTATCGTTCAACGAAAGATATTTTGCCAGGAAATGAGCTCTTG
GTTTGGTATGATACAAAATATACACAGCTTCTTGGTATACCATTGACTTG
GAATGATAACAGAGGAACAACAAGCAAACGAAAGAATTCATTGAGTATTT
GCACGGACGATCCATCAACACAACAACCACAACAAACAAGACGAAAACGT
GAAAAAGTCACACCACTATCATTGTTACAGCAAATCGACTACAAAACACA
GCCTCCACGTAAAAACGAACTCGAGTTTTTAGCAAGTCTGATTGCTAAGA
ATGCTCCATCTACACTATCAACAAATTATGAAAACTCTCCTTTCTTATCG
AGGAAAGATCTACCAGTTCCGCCCTCTACTATCCGCTGCGACAAATGCTA
TTTCTCTTTTCCCAACAAAGAGCTTCTCATAACACACAAATGCAGCGCAA
TACCTTGGATACCACCACCTCCGCCATCAAATCTAAGAGGTGGACCACCC
GTTGAGAAACATCAACCTCTACACCGCCCAATACACGTTAATACGCCTTA
CGCCCCAGGAATCGACTTCACGCCAGCTTCAGCCCTTAATCCACATTATC
ACAGTTATTATCAAAATCTTGCGCATGCGTACCCTTCACCTCCTATGGAG
CCGCCAATCAAGAACTTTGGACCTTATAAATCTAGTATTTTAccattaaa
aaacttttaaaatagattttgtttgaaaaatatttaaccttatcggggaa
aaagtTGTCGGGGGAAAGTGCCGAAAATTTTTCACTGATATTTTATCCCA
GACCAAAACTTTTATACCTAAAATTTTACGCGGTAACTAATATTCGAATC
TAAAAACTGATTATAAAATCCTGACATTTTTTTCCCGATAAGGTAAATCT
TTATTGCATCGATTTTCTAAAACAATAGATAGAAAGCTTGATTGTGATTT
TAATTGTCCACCTGATGAGGGGATTTCTGTTGCCTCGCAGATAAGAGGTT
GTTCTAGAAAAGAATTTGTCTTCTTATGAATCTTGTAAAGGTTTTATTAG
CGGAT
Run BLAST on NCBI

protein sequence of TCONS_00055174-protein

>TCONS_00055174-protein ID=TCONS_00055174-protein|Name=TCONS_00055174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
METPVSNGQTTNPAVANLPNKRISDNVIQKYLYGYKEMRLVSSEEVLSTL
LKGQIRKCTSLPETPPLSPRKIRTPDEISLCSSSLPGSKFGACAIKRIQQ
GTWFGPFEGKLVRTTEISSSMNTDHMWEIFHDGEVSHFLDGFNENNWMAF
VRCARHKKEQNLVVFQYHGCIYYRSTKDILPGNELLVWYDTKYTQLLGIP
LTWNDNRGTTSKRKNSLSICTDDPSTQQPQQTRRKREKVTPLSLLQQIDY
KTQPPRKNELEFLASLIAKNAPSTLSTNYENSPFLSRKDLPVPPSTIRCD
KCYFSFPNKELLITHKCSAIPWIPPPPPSNLRGGPPVEKHQPLHRPIHVN
TPYAPGIDFTPASALNPHYHSYYQNLAHAYPSPPMEPPIKNFGPYKSSIL
PLKNF
Run BLAST on NCBI

transcript from alignment at scaffold_251:555805..562668+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055174 ID=TCONS_00055174|Name=TCONS_00055174|organism=Clytia hemisphaerica|type=transcript|length=6864bp|location=Sequence derived from alignment at scaffold_251:555805..562668+ (Clytia hemisphaerica)
gattttttatttcgatacTTCAGTGGTTGATACCATTTTATCAATAAATG
GTATGAGTTACAAGGGGGCAAAAggtttgtacacatttttttacaagaac
attgaagccttcggatgttatgaactttttgagttttaagcctattCTTA
ACCATGTTctgattttcaacattttttgagcatttttgtccattttccta
agaaattgggtattttagaATCCATTAAGCCTTAAAGTGTTTATTTTTCC
GAACTATGTCGAACACGAATGGGAATTCTAATTCCTTCCAATTTATCGGA
AGATTcgattcttaaaatgttcttatttccacAATTTGAAGGAATATGTT
TGTGTGGTTTCCTgggggctcccccaggggctggcgtgacgcgtaaatga
cccttttttctgtcgtgaatacgtgaattggactttgtcaacgcgtgaat
acgtgaattgtgATATcggcgtgaacgtgaaaataagattttaccagcgt
gaattcgtgaatcgagattttgagcgtgaacgtgaaaagcaaatattgtc
taaaacaaaactgaataaacctaaatatgtgaaattttcttgctcgcttc
gctcgcataatcCTTGATATCATATTGACCTATTGCCAttgtaaagttat
tcaaaataatcaaaaattgaaacagaaacaaatacttttccttatttttc
taagGGCGCATTTTTTGATGCAAATATTGCATCCAGCGAGAGTGTTTTGA
GCCAAAACCAAAAAgtctaaatgagaaaattttcttcgtcggcgCTAATG
CTGGTCGTCTTTCTGTAATCGCTTATATTGTTACTAAATGCAGTACACAA
TATGATACCGCATGAACTTGGAGACAGTGAAGGGTATTTGGTTCTTCGAT
AATTTACAAAAGTAGGTAGATAGTTCTAAAAACTTTTATATGATTGCATC
ATCGaacattcagaaaaaaactcttGTGACGCCGCACCGTGTAAGGCAGG
TACGTcactcgccgtaccagatttgtaccagtaaatggtcagtgttgaaa
ataatcaaagattctgaatgaattgtttgaccaaacaaggcatattaGGG
TAACATTAGTGTGTTAAGGCCGTTTTCTCAGCAATGAAAGagtgaaaatt
gtcaaaaaattttcgcgctcgcttcgctcgctttttccTTTCCACAGCTT
TTCTTCAATGAGACAGGGGGGCAAACTTTGGAATTTTCGTCCTCTGGTTG
TACCACCTTTTTGAAGCTCGCGCTTTTCCAGACCATGAATTTGAGCCAAA
CCTCGATTTAAATtgattctcaaaataaaatatatttagggCCTGCGACG
AAGAAAATCGGAGGGAAATCCTTAAAGCTAAGGCTTAACTTTGCACTTAC
CTcccttaaaaagcaaattcaggCAGGGTTTATACCACCGTACGCCAGAG
AGGTagttttttgtaactttggcgTGATAGACGTGATAGACAGACCTTAA
ACATTGCCCTATGAAAGCTCCAATAATTGTAAGAGGTCTTAATAGGTCGA
CGctgtcgagaataaggtcaaaaaactgcagaaaacgtTATGTTGGccat
aaaaaggtcaaatttagcccaataaggtcacaatcgtttaacaaaagaat
taaaagcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcgcgcgtgaata
cgtgaattggcaaaaaattttgcgtgaatacgtgaattgagggtcgactg
ggggggGCCTCTTCCTGGAAAATATAGGTGTTTTAAAGTTCGCAAAGCCT
TAGAATATGTTTTAAACTtgatcttaacattttggccatcgaagccttat
gttcttatatagttttttcttataaaaaacgtgtagttaaagaaattatt
ggggAGTAAGACGATCGTGCTTTCAATTTCTATATTTACACCAGTAGGCA
ATGTTTTTTTCCCAGCGAAACACACCCTCCTCTCgaacccactgggaccc
cactGGCACTGGAAAATAGTGGCCAAAATATCTTCCCTACTGGAAAATTA
TACCCCAATCCCCCCTAAAAGTATGTAATCGAATAAACGAgacctcactg
caaaatatggGGCTAATCTTACCATCTccgttgaattttctgactcaaaa
aaaaatgaaattctgatCCTCAGTCATGAAAAAAGGAGAATGTACGTTAa
ttcccatcgagttttggtccgtaaTCTTTACCCCCGGTGGCTaaaaaaaa
tcctactgggtctgtgagaagggagtaaAGCGAATAAAGAACACTGCCTT
AGAATAATGTTTTTAGCCTTTGGTTATCAATTGAATGAGCTAAAATATTC
CCTTGTCACAGCCCAAGAATAAACCCGACGAAACCCTAGAATATAAAAAA
TTCTCCATAACTATATAAAAGTTTCAATTCTTTATCGTTTACAGCACATT
TTGTAGTATAGCATGGAAACACCAGTTAGCAATGGACAAACCACTAACCC
TGCTGTTGCCAACCTcccaaacaaaagaatttctgatAACGTCATTCAAA
AATACCTTTACGGCTACAAAGAAATGAGGCTTGTTTCGTCGGAAGAAGTT
TTATCCACTCTATTGAAAGGTAAGTTCTAGTTTCTGCCCTGTCTATTTTG
TTGGTTAAAGTAGGCTAAAAGTGGGCAGAACGTTGGGAATTacaatcttt
gcttgaaaaaggttgaaagaagtcattgttTTGAGGTCAAATAAAGAGAg
taatgcattgactttagacagccaacgTTCTGCCAACTTTCTGCCAACTT
TAACTAACATTTAGAATacgcagggcgaaaagtggacCGTCTTAACCAGA
GCTAAACGGTTTAGACGGACAACTTCTCGCCCACTTTTTACCTACCGTCC
TGCTTCTTAAAAGAAGCAGGTCAGAAAGACTCTAGTTTAGACAATCCTGT
CCCACAGCCACGTCGGAACTTTTTTCCACAGCGGGATGAAAATTTCGTGA
TTTATTGTTttcaggttaaaaaatccagtgctGTGGGGATTGCTTTTAGA
GCACAATCTTTTCAATTGAATATCTAATggggatgaaaacaaagtcttta
CAATCTGGGCTGAAATCGTAGGGTATTATTCACATTGCGTTATTCCCACG
AAAATTTGGCCAAACTTTTCAGTGGGGTGGGGGTTCCACCGGacgacaca
ggggtgtaatcatattttttagttttacacatcctttttattttcatcat
gAGAGGTCCTGTCGCAGCTCCTCAAGAATTGAATCCTTTTTGAATGTCTT
AACGTCTAATTCGATCATAGGTCATAGAATTACTCCCTGTTATTCATCtc
atacagtcaactctctaattcgaacctctattattcgaatttttctgtaa
aatagtggtcccctcagctagaaAGTAGTATAAATTACTCTTTGTAATTC
GAAAAGAAACTTCCtggccccttgaagatcgaattagagagagttaactG
TAGAGTATCCTTGATGGAAAAAGTATATGCTCGACTTTgaaaactttcat
tttacagGTCAAATACGAAAGTGCACCAGCCTACCGGAAACACCACCTCT
ATCACCACGTAAAATCAGAACACCTGATGAAATATCATTATGTTCGTCAA
GTCTACCCGGATCGAAATTTGGAGCATGCGCAATAAAGAGGATTCAACAA
GGCACTTGGTTTGGTCCTTTCGAAGGGAAGTTAGTGAGGACGACCGAGAT
TTCATCCAGTATGAACACAGACCACATGTGGGAGGTATGTTTAGCAAGAc
taatttgattagttgttttacgggcccgaccgaccttgaaattacaaaaa
tcgaaaaaaaactcatttttgtagtatatttttattttcattgctttaca
gactgccaaattttcaaaattttggttgtttttccaaggttttgagaatt
tattATTCATGATTTGAccttttgtgtctttttattttctatttcgcatt
ttcgtcaagatgtagtagtttttactacctttttagaagattttatagtt
gaaattctacttttatttttattttttcgccgatcGGCCGACCCTcattt
ttgggtagcttggcccgtaaaacaacaaattaaattggcctcgcctttTA
AAATTGGAATCTCCAAAACTCGAACATGCACGGGGAAcaatttgttcgat
ttaaggaaatttcaagttatagAGTAAGGTTTACAAGGCACTGTTAACTG
AAGGTcgataaaacttgttcgagttaaggaaacaaTCCAGTTATAGAGGT
TGAGGAAATTTTTGAAGTAATTTGAGGAAAGATTGAATTAAATTCATCTC
GGTTCTTTACATCCTAATGCGGCTTCGGTTAGATAATGTAGTTACAACAA
ATACTGTTAATAATAATTAGGTTAGGCCTTAAAAGCCGGTATATGGTTTA
TATTATTGATACACCTGTTAGACTCAGTGGACAGGTAGGTTTTTTTGTGC
TGGCATTTATTATTTATCCTGAAAATAAGACCAAGTCGCGAAAAAGCGGC
Tttgtcattcattcattcattcattcattcattcattcattcattcattc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcattctctTTTTACTCTTTTATCACCACAGATCTTTCACGACGGAGAAG
TCAGTCATTTCCTTGACGGTTTTAACGAAAATAACTGGATGGCTTTCGTC
CGCTGCGCTCGCCATAAGAAAGAACAAAATCTGGTCGTTTTTCAATATCA
CGGTTGTATTTATTATCGTTCAACGAAAGATATTTTGCCAGGAAATGAGC
TCTTGGTTTGGTATGATACAAAATATACACAGCTTCTTGGTATACCATTG
ACTTGGAATGATAACAGAGGTTTGCATACTACACCTCTGTTTGCTCTGTG
TCCCAGTGGAATTTTTTCCCTCAGTGGAGAtcaaaatttctatcgaaatc
ctcATTGGGATGTatattctattgtttcaagctCCAAAAAGGGCATCATA
TtaaggatggttttggagtgtaaaTTTTTCCATTCGATTTCTATAAAAGA
ATGAAATTACAGGGTATACCTCCTGAAGTGAGTTAAAAATTCAGCGTACT
TTTTTCACCAAGGGAGATTTTTTGGCTGAGCTTTCAATCtccactgggtc
tgtgacaaGGTGCGGTTTTATGTAATTTCCGAGAAGAGTCTGATTACTCT
GCGTTGGCACGTAAACACTATAAAGGCCATGGCTCTTTAACAGAATCTGC
CCTGTTTGGATCACCGCTATGATCTTTTTCTTCCAGATTTggaatgaata
ttaaatgagcttttcagTACAATGATtaagcgaccgtagtacagtggtag
agcatccggctacggttcgcaaggttgtgggttcaacccccagccgggtt
ataccaaagattcccaaaatggtacttgattcCTCTCTGCTCAgtaacta
agagaaggatcaagggtaagtggagaaatccagggagaaagagtggcgcc
ctcccctaccttcgggtagatagctatcgaaagaggagccttcgggtcgc
ctccgactgcggtcgcagacttacttacaaTGATTTGCTTAAAACTAAAA
CAATCACACCAAAATAAACGTCAATATCAAACATAAACATAAGAGGCATT
TTAAAAACCACAAGGTTAGTTTGAACAACCAGGCCATGCTTGTGTTATAA
AATATCAACTTTATTCCCCACAGGAACAACAAGCAAACGAAAGAATTCAT
TGAGTATTTGCACGGACGATCCATCAACACAACAACCACAACAAACAAGA
CGAAAACGTGAAAAAGTCACACCACTATCATTGTTACAGCAAATCGACTA
CAAAACACAGCCTCCACGTAAAAACGAACTCGAGTTTTTAGCAAGTCTGA
TTGCTAAGAATGCTCCATCTACACTATCAACAAATTATGAAAACTCTCCT
TTCTTATCGAGGAAAGATCTACCAGTTCCGCCCTCTACTATCCGCTGCGA
CAAATGCTATTTCTCTTTTCCCAACAAAGAGCTTCTCATAACACACAAAT
GCAGCGCAATACCTTGGATACCACCACCTCCGCCATCAAATCTAAGAGGT
GGACCACCCGTTGAGAAACATCAACCTCTACACCGCCCAATACACGTTAA
TACGCCTTACGCCCCAGGAATCGACTTCACGCCAGCTTCAGCCCTTAATC
CACATTATCACAGTTATTATCAAAATCTTGCGCATGCGTACCCTTCACCT
CCTATGGAGCCGCCAATCAAGAACTTTGGACCTTATAAATCTAGTATTTT
Accattaaaaaacttttaaaatagattttgtttgaaaaatatttaacctt
atcggggaaaaagtTGTCGGGGGAAAGTGCCGAAAATTTTTCACTGATAT
TTTATCCCAGACCAAAACTTTTATACCTAAAATTTTACGCGGTAACTAAT
ATTCGAATCTAAAAACTGATTATAAAATCCTGACATTTTTTTCCCGATAA
GGTAAATCTTTATTGCATCGATTTTCTAAAACAATAGATAGAAAGCTTGA
TTGTGATTTTAATTGTCCACCTGATGAGGGGATTTCTGTTGCCTCGCAGA
TAAGAGGTTGTTCTAGAAAAGAATTTGTCTTCTTATGAATCTTGTAAAGG
TTTTATTAGCGGAT

Coding sequence (CDS) from alignment at scaffold_251:555805..562668+

>TCONS_00055174 ID=TCONS_00055174|Name=TCONS_00055174|organism=Clytia hemisphaerica|type=CDS|length=4872bp|location=Sequence derived from alignment at scaffold_251:555805..562668+ (Clytia hemisphaerica)
ATGGAAACACCAGTTAGCAATGGACAAACCACTAACCCTGCTGTTGCCAA
CCTcccaaacaaaagaatttctgatAACGTCATTCAAAAATACCTTTACG
GCTACAAAGAAATGAGGCTTGTTTCGTCGGAAGAAGTTTTATCCACTCTA
TTGAAAGGTCAAATACGAAAGTGCACCAGCCTACCGGAAACACCACCTCT
ATCACCACGTAAAATCAGAACACCTGATGAAATATCATTATGTTCGTCAA
GTCTACCCGGATCGAAATTTGGAGCATGCGCAATAAAGAGGATTCAACAA
GGCACTTGGTTTGGTCCTTTCGAAGGGAAGTTAGTGAGGACGACCGAGAT
TTCATCCAGTATGAACACAGACCACATGTGGGAGATCTTTCACGACGGAG
AAGTCAGTCATTTCCTTGACGGTTTTAACGAAAATAACTGGATGGCTTTC
GTCCGCTGCGCTCGCCATAAGAAAGAACAAAATCTGGTCGTTTTTCAATA
TCACGGTTGTATTTATTATCGTTCAACGAAAGATATTTTGCCAGGAAATG
AGCTCTTGGTTTGGTATGATACAAAATATACACAGCTTCTTGGTATACCA
TTGACTTGGAATGATAACAGAGGAACAACAAGCAAACGAAAGAATTCATT
GAGTATTTGCACGGACGATCCATCAACACAACAACCACAACAAACAAGAC
GAAAACGTGAAAAAGTCACACCACTATCATTGTTACAGCAAATCGACTAC
AAAACACAGCCTCCACGTAAAAACGAACTCGAGTTTTTAGCAAGTCTGAT
TGCTAAGAATGCTCCATCTACACTATCAACAAATTATGAAAACTCTCCTT
TCTTATCGAGGAAAGATCTACCAGTTCCGCCCTCTACTATCCGCTGCGAC
AAATGCTATTTCTCTTTTCCCAACAAAGAGCTTCTCATAACACACAAATG
CAGCGCAATACCTTGGATACCACCACCTCCGCCATCAAATCTAAGAGGTG
GACCACCCGTTGAGAAACATCAACCTCTACACCGCCCAATACACGTTAAT
ACGCCTTACGCCCCAGGAATCGACTTCACGCCAGCTTCAGCCCTTAATCC
ACATTATCACAGTTATTATCAAAATCTTGCGCATGCGTACCCTTCACCTC
CTATGGAGCCGCCAATCAAGAACTTTGGACCTTATAAATCTAGTATTTTA
ccattaaaaaacttttaaATGGAAACACCAGTTAGCAATGGACAAACCAC
TAACCCTGCTGTTGCCAACCTcccaaacaaaagaatttctgatAACGTCA
TTCAAAAATACCTTTACGGCTACAAAGAAATGAGGCTTGTTTCGTCGGAA
GAAGTTTTATCCACTCTATTGAAAGGTCAAATACGAAAGTGCACCAGCCT
ACCGGAAACACCACCTCTATCACCACGTAAAATCAGAACACCTGATGAAA
TATCATTATGTTCGTCAAGTCTACCCGGATCGAAATTTGGAGCATGCGCA
ATAAAGAGGATTCAACAAGGCACTTGGTTTGGTCCTTTCGAAGGGAAGTT
AGTGAGGACGACCGAGATTTCATCCAGTATGAACACAGACCACATGTGGG
AGATCTTTCACGACGGAGAAGTCAGTCATTTCCTTGACGGTTTTAACGAA
AATAACTGGATGGCTTTCGTCCGCTGCGCTCGCCATAAGAAAGAACAAAA
TCTGGTCGTTTTTCAATATCACGGTTGTATTTATTATCGTTCAACGAAAG
ATATTTTGCCAGGAAATGAGCTCTTGGTTTGGTATGATACAAAATATACA
CAGCTTCTTGGTATACCATTGACTTGGAATGATAACAGAGGAACAACAAG
CAAACGAAAGAATTCATTGAGTATTTGCACGGACGATCCATCAACACAAC
AACCACAACAAACAAGACGAAAACGTGAAAAAGTCACACCACTATCATTG
TTACAGCAAATCGACTACAAAACACAGCCTCCACGTAAAAACGAACTCGA
GTTTTTAGCAAGTCTGATTGCTAAGAATGCTCCATCTACACTATCAACAA
ATTATGAAAACTCTCCTTTCTTATCGAGGAAAGATCTACCAGTTCCGCCC
TCTACTATCCGCTGCGACAAATGCTATTTCTCTTTTCCCAACAAAGAGCT
TCTCATAACACACAAATGCAGCGCAATACCTTGGATACCACCACCTCCGC
CATCAAATCTAAGAGGTGGACCACCCGTTGAGAAACATCAACCTCTACAC
CGCCCAATACACGTTAATACGCCTTACGCCCCAGGAATCGACTTCACGCC
AGCTTCAGCCCTTAATCCACATTATCACAGTTATTATCAAAATCTTGCGC
ATGCGTACCCTTCACCTCCTATGGAGCCGCCAATCAAGAACTTTGGACCT
TATAAATCTAGTATTTTAccattaaaaaacttttaaATGGAAACACCAGT
TAGCAATGGACAAACCACTAACCCTGCTGTTGCCAACCTcccaaacaaaa
gaatttctgatAACGTCATTCAAAAATACCTTTACGGCTACAAAGAAATG
AGGCTTGTTTCGTCGGAAGAAGTTTTATCCACTCTATTGAAAGGTCAAAT
ACGAAAGTGCACCAGCCTACCGGAAACACCACCTCTATCACCACGTAAAA
TCAGAACACCTGATGAAATATCATTATGTTCGTCAAGTCTACCCGGATCG
AAATTTGGAGCATGCGCAATAAAGAGGATTCAACAAGGCACTTGGTTTGG
TCCTTTCGAAGGGAAGTTAGTGAGGACGACCGAGATTTCATCCAGTATGA
ACACAGACCACATGTGGGAGATCTTTCACGACGGAGAAGTCAGTCATTTC
CTTGACGGTTTTAACGAAAATAACTGGATGGCTTTCGTCCGCTGCGCTCG
CCATAAGAAAGAACAAAATCTGGTCGTTTTTCAATATCACGGTTGTATTT
ATTATCGTTCAACGAAAGATATTTTGCCAGGAAATGAGCTCTTGGTTTGG
TATGATACAAAATATACACAGCTTCTTGGTATACCATTGACTTGGAATGA
TAACAGAGGAACAACAAGCAAACGAAAGAATTCATTGAGTATTTGCACGG
ACGATCCATCAACACAACAACCACAACAAACAAGACGAAAACGTGAAAAA
GTCACACCACTATCATTGTTACAGCAAATCGACTACAAAACACAGCCTCC
ACGTAAAAACGAACTCGAGTTTTTAGCAAGTCTGATTGCTAAGAATGCTC
CATCTACACTATCAACAAATTATGAAAACTCTCCTTTCTTATCGAGGAAA
GATCTACCAGTTCCGCCCTCTACTATCCGCTGCGACAAATGCTATTTCTC
TTTTCCCAACAAAGAGCTTCTCATAACACACAAATGCAGCGCAATACCTT
GGATACCACCACCTCCGCCATCAAATCTAAGAGGTGGACCACCCGTTGAG
AAACATCAACCTCTACACCGCCCAATACACGTTAATACGCCTTACGCCCC
AGGAATCGACTTCACGCCAGCTTCAGCCCTTAATCCACATTATCACAGTT
ATTATCAAAATCTTGCGCATGCGTACCCTTCACCTCCTATGGAGCCGCCA
ATCAAGAACTTTGGACCTTATAAATCTAGTATTTTAccattaaaaaactt
ttaaATGGAAACACCAGTTAGCAATGGACAAACCACTAACCCTGCTGTTG
CCAACCTcccaaacaaaagaatttctgatAACGTCATTCAAAAATACCTT
TACGGCTACAAAGAAATGAGGCTTGTTTCGTCGGAAGAAGTTTTATCCAC
TCTATTGAAAGGTCAAATACGAAAGTGCACCAGCCTACCGGAAACACCAC
CTCTATCACCACGTAAAATCAGAACACCTGATGAAATATCATTATGTTCG
TCAAGTCTACCCGGATCGAAATTTGGAGCATGCGCAATAAAGAGGATTCA
ACAAGGCACTTGGTTTGGTCCTTTCGAAGGGAAGTTAGTGAGGACGACCG
AGATTTCATCCAGTATGAACACAGACCACATGTGGGAGATCTTTCACGAC
GGAGAAGTCAGTCATTTCCTTGACGGTTTTAACGAAAATAACTGGATGGC
TTTCGTCCGCTGCGCTCGCCATAAGAAAGAACAAAATCTGGTCGTTTTTC
AATATCACGGTTGTATTTATTATCGTTCAACGAAAGATATTTTGCCAGGA
AATGAGCTCTTGGTTTGGTATGATACAAAATATACACAGCTTCTTGGTAT
ACCATTGACTTGGAATGATAACAGAGGAACAACAAGCAAACGAAAGAATT
CATTGAGTATTTGCACGGACGATCCATCAACACAACAACCACAACAAACA
AGACGAAAACGTGAAAAAGTCACACCACTATCATTGTTACAGCAAATCGA
CTACAAAACACAGCCTCCACGTAAAAACGAACTCGAGTTTTTAGCAAGTC
TGATTGCTAAGAATGCTCCATCTACACTATCAACAAATTATGAAAACTCT
CCTTTCTTATCGAGGAAAGATCTACCAGTTCCGCCCTCTACTATCCGCTG
CGACAAATGCTATTTCTCTTTTCCCAACAAAGAGCTTCTCATAACACACA
AATGCAGCGCAATACCTTGGATACCACCACCTCCGCCATCAAATCTAAGA
GGTGGACCACCCGTTGAGAAACATCAACCTCTACACCGCCCAATACACGT
TAATACGCCTTACGCCCCAGGAATCGACTTCACGCCAGCTTCAGCCCTTA
ATCCACATTATCACAGTTATTATCAAAATCTTGCGCATGCGTACCCTTCA
CCTCCTATGGAGCCGCCAATCAAGAACTTTGGACCTTATAAATCTAGTAT
TTTAccattaaaaaacttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034755XLOC_034755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055174-exon-scaffold_251-1491911889:555805..555878TCONS_00055174-exon-scaffold_251-1491911889:555805..555878Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1510915933:555805..555878TCONS_00055174-exon-scaffold_251-1510915933:555805..555878Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1575043694:555805..555878TCONS_00055174-exon-scaffold_251-1575043694:555805..555878Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1491911889:558399..558573TCONS_00055174-exon-scaffold_251-1491911889:558399..558573Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1510915933:558399..558573TCONS_00055174-exon-scaffold_251-1510915933:558399..558573Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1575043694:558399..558573TCONS_00055174-exon-scaffold_251-1575043694:558399..558573Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1491911889:559512..559738TCONS_00055174-exon-scaffold_251-1491911889:559512..559738Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1510915933:559512..559738TCONS_00055174-exon-scaffold_251-1510915933:559512..559738Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1575043694:559512..559738TCONS_00055174-exon-scaffold_251-1575043694:559512..559738Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1491911889:560636..560873TCONS_00055174-exon-scaffold_251-1491911889:560636..560873Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1510915933:560636..560873TCONS_00055174-exon-scaffold_251-1510915933:560636..560873Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1575043694:560636..560873TCONS_00055174-exon-scaffold_251-1575043694:560636..560873Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1491911889:561728..562668TCONS_00055174-exon-scaffold_251-1491911889:561728..562668Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1510915933:561728..562668TCONS_00055174-exon-scaffold_251-1510915933:561728..562668Clytia hemisphaericaexon
TCONS_00055174-exon-scaffold_251-1575043694:561728..562668TCONS_00055174-exon-scaffold_251-1575043694:561728..562668Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055174-proteinTCONS_00055174-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:555805..562668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94027	4.8036	1.11582	0.923665	1.32846	0	10.1361	10.6754	7.33362	7.10536	5.96728	5.2388	12.172	8.84957	7.7043	18.3748	12.7977	12.7806	1.43447	0.846053	7.5198	8.46977	9.04046	12.2507	5.2904	6.61018	2.05219	0	0	1.11443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00055174 vs. Swiss-Prot (Human)
Match: PRDM6 (Putative histone-lysine N-methyltransferase PRDM6 OS=Homo sapiens GN=PRDM6 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.291e-38
Identity = 90/261 (34.48%), Postives = 135/261 (51.72%), Query Frame = 3 
Query:  315 PDEISLCSSSLPGSKFGACAIKRIQQGTWFGPFEGKLV--RTTEISSSMNTDHMWEIF-HDGEVSHFLDGF--NENNWMAFVRCARHKKEQNLVVFQYHGCIYYRSTKDILPGNELLVWYDTKYTQLLGIPLTWNDNRGTTSKRKNSLSICXXXXXXXXXXXXRRKREKVTPLSLLQQIDYKTQPPRKNELEFLASLIAKNAPSTLSTNYENSPFLSRKDLPVPPSTI------------RCDKCYFSFPNKELLITHKCS 1046
            P E+ LC+S++PG  +G CA +RIQQGTW GPF+G L+     +  +  NT H+WEI+  DG + HF+DG   ++++WM ++RCARH  EQNL V QY   I+YR+  DI  G ELLVWY+  YT   GIPL          +  N  S   +    Q   Q   K  K+ P +  + + +   P  +N      SL+ K+ P  + + +      +++ L  P ST             +C +C+ +F  + LL  H C+
Sbjct:  245 PREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQCI----AQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVVFPQTPCSRN-----FSLLDKSGP--IESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCT 494
The following BLAST results are available for this feature:
BLAST of TCONS_00055174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRDM61.291e-3834.48Putative histone-lysine N-methyltransferase PRDM6 ... [more]
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