TCONS_00055191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055191
Unique NameTCONS_00055191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055191 ID=TCONS_00055191|Name=TCONS_00055191|organism=Clytia hemisphaerica|type=transcript|length=637bp
TAAATTTAAAGAACTCTAATTATTCTAAtacaaaaacttatttttagagA
GTAATCTTTGATAATAGACAATGTCAAGTATTTTGAAGCGAGGTGAAAGC
AAAACTCCAAATGAAAAACGaataccaaaaaagaaaaagaaagaaattaa
ctATGTAcattgttttggaaatgaagaaaaagaatttttagatGCTTTGA
CGCTGGGTACATCAATTATGGAGCTCTTGAATCATTTATTATACGCCAGA
AGTCAGGTCCCAATGCCTCTTGTTATGCTGTCCCAGATGATGGATAGGAA
AAAGCAAACTGTTAACAAGAATCCTCTAATTGCAACAAAAGCTACTAAAA
AGGAAACATCAGTTCACAATTTATCTTTAATCACAAAATCAATTCggAAA
TACCTTGGGGTACGTTTATACGGTgtcatttgtttttgtttttgtcccTT
TAGAGGGACTATTTCCAAACATCagctaaatttttaaaatctttctcaAA
ATGTTTGAATCATTCAAACTCTAGCgagtttttaaacatttttgaaactc
ATACTTAATGTATAGCTCTactattaaattttgagatatacatctgttgc
atatctgttatatatttttaaaatagtTATATTAGGT
Run BLAST on NCBI

protein sequence of TCONS_00055191-protein

>TCONS_00055191-protein ID=TCONS_00055191-protein|Name=TCONS_00055191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MSSILKRGESKTPNEKRIPKKKKKEINYVHCFGNEEKEFLDALTLGTSIM
ELLNHLLYARSQVPMPLVMLSQMMDRKKQTVNKNPLIATKATKKETSVHN
LSLITKSIRKYLGVRLYGVICFCFCPFRGTISKHQLNF
Run BLAST on NCBI

transcript from alignment at scaffold_251:679918..681038+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055191 ID=TCONS_00055191|Name=TCONS_00055191|organism=Clytia hemisphaerica|type=transcript|length=1121bp|location=Sequence derived from alignment at scaffold_251:679918..681038+ (Clytia hemisphaerica)
TAAATTTAAAGAACTCTAATTATTCTAAtacaaaaacttatttttagagA
GTAATCTTTGATAATAGACAATGTCAAGTATTTTGAAGCGAGGTGAAAGC
AAAACTCCAAATGAAAAACGaataccaaaaaagaaaaagaaagaaattaa
ctATGTAcattgttttggaaatgaagaaaaagaatttttagatGCTTTGA
CGCTGGGTACATCAATTATGGAGCTCTTGAATCATTTATTATACGCCAGA
AGTCAGGTCCCAATGCCTCTTGTTATGCTGTCCCAGATGATGGATAGGAA
AAAGCAAACTGTTAACAAGAATCCTCTAATTGCAACAAAAGCTACTAAAA
AGGAAACATCAGTTCACAATTTATCTTTAATCACAAAATCAATTCGTAAG
CTTTTTTCATTGCACCCTGTACGTAAAATAGCTTTGATTTTAGGCTCAAC
AACAATAAGCCCGAAAGAGACTTTCGTTATAAGACTTGATAGTGACCTAA
CtgatatttgtcaaaataaacaCTCTATGGATAGACCAAATGGATCAATA
GTACGTAGATTCTTACGAGGTTTTGTTACCAATGAAGCTTTAAATGATTT
ACAGTCAATCAGACCGCAGAGCATACACATACTTTTTAGTTTGGATGATT
TCTATGAACTTGACGAAGACCTTAGTAGTATATTTATCCCTAAAGCGAAT
TATAGAGTACCCTCGCGTGGCGTTATTCACCATATCGATGTATGTTTGAA
TGAATTAGGGGCGGAAGATAACTTTCTTGATGAGCTCTCCTTAGACTCAG
GTCATTGGTATGCTGCTAATTTAACAGCCAAGGGATTCAGAGAAAGATAA
TTACttttcatttgatattttttttttagggAAATACCTTGGGGTACGTT
TATACGGTgtcatttgtttttgtttttgtcccTTTAGAGGGACTATTTCC
AAACATCagctaaatttttaaaatctttctcaAAATGTTTGAATCATTCA
AACTCTAGCgagtttttaaacatttttgaaactcATACTTAATGTATAGC
TCTactattaaattttgagatatacatctgttgcatatctgttatatatt
tttaaaatagtTATATTAGGT

Coding sequence (CDS) from alignment at scaffold_251:679918..681038+

>TCONS_00055191 ID=TCONS_00055191|Name=TCONS_00055191|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_251:679918..681038+ (Clytia hemisphaerica)
ATGTCAAGTATTTTGAAGCGAGGTGAAAGCAAAACTCCAAATGAAAAACG
aataccaaaaaagaaaaagaaagaaattaactATGTAcattgttttggaa
atgaagaaaaagaatttttagatGCTTTGACGCTGGGTACATCAATTATG
GAGCTCTTGAATCATTTATTATACGCCAGAAGTCAGGTCCCAATGCCTCT
TGTTATGCTGTCCCAGATGATGGATAGGAAAAAGCAAACTGTTAACAAGA
ATCCTCTAATTGCAACAAAAGCTACTAAAAAGGAAACATCAGTTCACAAT
TTATCTTTAATCACAAAATCAATTCggAAATACCTTGGGGTACGTTTATA
CGGTgtcatttgtttttgtttttgtcccTTTAGAGGGACTATTTCCAAAC
ATCagctaaatttttaaATGTCAAGTATTTTGAAGCGAGGTGAAAGCAAA
ACTCCAAATGAAAAACGaataccaaaaaagaaaaagaaagaaattaactA
TGTAcattgttttggaaatgaagaaaaagaatttttagatGCTTTGACGC
TGGGTACATCAATTATGGAGCTCTTGAATCATTTATTATACGCCAGAAGT
CAGGTCCCAATGCCTCTTGTTATGCTGTCCCAGATGATGGATAGGAAAAA
GCAAACTGTTAACAAGAATCCTCTAATTGCAACAAAAGCTACTAAAAAGG
AAACATCAGTTCACAATTTATCTTTAATCACAAAATCAATTCggAAATAC
CTTGGGGTACGTTTATACGGTgtcatttgtttttgtttttgtcccTTTAG
AGGGACTATTTCCAAACATCagctaaatttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034762XLOC_034762Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055191-proteinTCONS_00055191-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055191-exon-scaffold_251-1491911889:679918..680312TCONS_00055191-exon-scaffold_251-1491911889:679918..680312Clytia hemisphaericaexon
TCONS_00055191-exon-scaffold_251-1510915933:679918..680312TCONS_00055191-exon-scaffold_251-1510915933:679918..680312Clytia hemisphaericaexon
TCONS_00055191-exon-scaffold_251-1575043694:679918..680312TCONS_00055191-exon-scaffold_251-1575043694:679918..680312Clytia hemisphaericaexon
TCONS_00055191-exon-scaffold_251-1491911889:680797..681038TCONS_00055191-exon-scaffold_251-1491911889:680797..681038Clytia hemisphaericaexon
TCONS_00055191-exon-scaffold_251-1510915933:680797..681038TCONS_00055191-exon-scaffold_251-1510915933:680797..681038Clytia hemisphaericaexon
TCONS_00055191-exon-scaffold_251-1575043694:680797..681038TCONS_00055191-exon-scaffold_251-1575043694:680797..681038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:679918..681038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.55994	0.378579	0	0	0	0	0	0.0117817	0	0	0	0.175252	0	0	0	0	0.184235	0.295333	0	0	0	0	0	0	0.736938	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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